Wall clock time and date at job start Tue Mar 31 2020 19:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47038 * 2 1 4 4 C 1.50692 * 109.47404 * 120.00249 * 2 1 3 5 5 N 1.31078 * 126.65869 * 300.17024 * 4 2 1 6 6 N 1.28841 * 107.99082 * 180.24344 * 5 4 2 7 7 N 1.28742 * 109.39726 * 359.75600 * 6 5 4 8 8 N 1.29024 * 108.80750 * 359.97438 * 7 6 5 9 9 C 1.46502 * 126.43523 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.46579 * 90.02908 * 9 8 7 11 11 O 1.21272 * 120.00480 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99651 * 179.97438 * 10 9 8 13 13 C 1.46492 * 120.00195 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47375 * 180.02562 * 13 12 10 15 15 C 1.53007 * 109.47237 * 180.02562 * 14 13 12 16 16 H 1.09001 * 110.88236 * 57.42899 * 15 14 13 17 17 C 1.55156 * 111.03634 * 181.33036 * 15 14 13 18 18 C 1.54333 * 103.01719 * 153.39453 * 17 15 14 19 19 N 1.47023 * 107.26879 * 338.14792 * 18 17 15 20 20 C 1.36939 * 125.64945 * 178.84833 * 19 18 17 21 21 H 1.07997 * 119.99728 * 179.41145 * 20 19 18 22 22 C 1.38815 * 119.99845 * 359.69059 * 20 19 18 23 23 N 1.31619 * 119.99884 * 359.72042 * 22 20 19 24 24 Si 1.86798 * 119.99660 * 179.72678 * 22 20 19 25 25 H 1.48490 * 109.47339 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47239 * 119.99875 * 24 22 20 27 27 H 1.48504 * 109.46636 * 239.99434 * 24 22 20 28 28 C 1.47419 * 108.70109 * 358.57834 * 19 18 17 29 29 H 1.08993 * 109.47345 * 299.99897 * 1 2 3 30 30 H 1.09002 * 109.47184 * 60.00445 * 1 2 3 31 31 H 1.09006 * 109.47053 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47181 * 240.00326 * 2 1 3 33 33 H 1.09002 * 109.46770 * 299.99808 * 3 2 1 34 34 H 1.08993 * 109.46969 * 59.99873 * 3 2 1 35 35 H 1.09000 * 109.46980 * 180.02562 * 3 2 1 36 36 H 1.08998 * 109.47372 * 330.03152 * 9 8 7 37 37 H 1.08998 * 109.46790 * 210.02876 * 9 8 7 38 38 H 0.97005 * 119.99623 * 359.97438 * 12 10 9 39 39 H 1.09008 * 109.47127 * 60.00555 * 13 12 10 40 40 H 1.08995 * 109.47620 * 300.00601 * 13 12 10 41 41 H 1.08998 * 109.46946 * 60.00511 * 14 13 12 42 42 H 1.08997 * 109.47396 * 300.00075 * 14 13 12 43 43 H 1.08995 * 110.71944 * 271.95603 * 17 15 14 44 44 H 1.08998 * 110.71971 * 35.05898 * 17 15 14 45 45 H 1.08997 * 109.99574 * 218.66556 * 18 17 15 46 46 H 1.09001 * 109.77592 * 97.49804 * 18 17 15 47 47 H 0.97000 * 119.99517 * 180.02562 * 23 22 20 48 48 H 1.09000 * 110.36612 * 143.20177 * 28 19 18 49 49 H 1.08999 * 110.37105 * 265.52387 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2303 5 7 1.7950 -0.3802 2.4764 6 7 2.4016 -1.2268 3.2349 7 7 3.0155 -2.0916 2.5050 8 7 2.8089 -1.8093 1.2631 9 6 3.3280 -2.5428 0.1061 10 6 2.3493 -3.6195 -0.2863 11 8 1.3200 -3.7606 0.3391 12 7 2.6181 -4.4257 -1.3324 13 6 1.6671 -5.4728 -1.7136 14 6 2.2092 -6.2388 -2.9220 15 6 1.2156 -7.3319 -3.3205 16 1 0.2364 -6.9060 -3.5393 17 6 1.7458 -8.1545 -4.5245 18 6 1.0529 -9.5216 -4.3436 19 7 0.6666 -9.6314 -2.9293 20 6 0.0050 -10.6878 -2.3624 21 1 -0.2258 -10.6770 -1.3074 22 6 -0.3640 -11.7751 -3.1425 23 7 -0.0827 -11.7882 -4.4283 24 14 -1.2598 -13.2195 -2.3676 25 1 -1.4546 -12.9614 -0.9183 26 1 -2.5816 -13.3912 -3.0222 27 1 -0.4548 -14.4546 -2.5462 28 6 1.1153 -8.4188 -2.2213 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 3.1300 1.4425 -0.0005 36 1 4.2846 -2.9975 0.3634 37 1 3.4654 -1.8550 -0.7283 38 1 3.4414 -4.3126 -1.8329 39 1 0.7101 -5.0184 -1.9705 40 1 1.5304 -6.1607 -0.8793 41 1 3.1659 -6.6932 -2.6648 42 1 2.3462 -5.5511 -3.7566 43 1 1.4519 -7.6922 -5.4668 44 1 2.8291 -8.2623 -4.4707 45 1 1.7414 -10.3257 -4.6034 46 1 0.1658 -9.5719 -4.9751 47 1 -0.3409 -12.5478 -4.9735 48 1 0.3850 -8.1283 -1.4661 49 1 2.0901 -8.5858 -1.7630 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691912412.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:22 Heat of formation + Delta-G solvation = 65.150755 kcal Electronic energy + Delta-G solvation = -28739.674896 eV Core-core repulsion = 24738.746246 eV Total energy + Delta-G solvation = -4000.928651 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -45.29673 -41.00028 -39.42672 -37.20876 -36.72020 -36.30497 -34.81691 -32.79658 -32.43968 -30.97803 -30.03064 -28.11135 -28.01006 -26.54607 -25.49043 -24.63523 -23.55901 -22.20979 -21.81073 -21.56313 -20.85566 -19.02191 -18.93899 -18.76909 -17.43340 -17.12123 -16.87329 -16.78163 -16.36879 -16.30200 -15.64967 -15.55137 -15.24114 -14.93625 -14.46915 -14.19513 -14.16030 -13.90291 -13.77777 -13.63666 -13.33450 -13.20186 -13.09790 -13.06980 -12.83726 -12.68792 -12.68127 -12.50376 -12.30056 -12.28007 -12.22901 -11.99810 -11.89554 -11.82049 -11.59735 -11.39972 -11.31886 -11.20094 -10.94355 -10.73277 -10.22735 -8.90181 -7.88050 -5.22813 0.08969 0.85375 1.13112 1.32042 1.42451 1.42980 1.53586 2.00075 2.46719 2.88174 3.15622 3.29704 3.42672 3.62270 3.67326 3.79681 3.91802 4.00251 4.01809 4.05731 4.16117 4.19590 4.32526 4.36972 4.38173 4.61750 4.64692 4.70882 4.76899 4.77591 4.83456 4.89609 4.91488 4.95444 5.00122 5.12830 5.15313 5.16902 5.27780 5.28283 5.33212 5.37151 5.43116 5.54321 5.71408 5.79687 6.19790 6.36564 7.05821 7.09754 7.48136 7.77859 8.41035 9.22188 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.020042 B = 0.001923 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.738965 B =14559.368701 C =15084.763424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.010 4.010 3 C -0.140 4.140 4 C 0.208 3.792 5 N -0.332 5.332 6 N -0.110 5.110 7 N -0.105 5.105 8 N -0.292 5.292 9 C 0.087 3.913 10 C 0.496 3.504 11 O -0.581 6.581 12 N -0.695 5.695 13 C 0.123 3.877 14 C -0.098 4.098 15 C -0.085 4.085 16 H 0.072 0.928 17 C -0.121 4.121 18 C 0.179 3.821 19 N -0.632 5.632 20 C -0.243 4.243 21 H 0.076 0.924 22 C -0.068 4.068 23 N -0.950 5.950 24 Si 0.976 3.024 25 H -0.269 1.269 26 H -0.290 1.290 27 H -0.290 1.290 28 C 0.131 3.869 29 H 0.054 0.946 30 H 0.102 0.898 31 H 0.037 0.963 32 H 0.127 0.873 33 H 0.100 0.900 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.176 0.824 37 H 0.198 0.802 38 H 0.427 0.573 39 H 0.062 0.938 40 H 0.044 0.956 41 H 0.083 0.917 42 H 0.106 0.894 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.002 0.998 46 H 0.007 0.993 47 H 0.247 0.753 48 H 0.028 0.972 49 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.166 28.935 -1.070 31.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.031 4.031 3 C -0.198 4.198 4 C -0.070 4.070 5 N -0.180 5.180 6 N -0.103 5.103 7 N -0.091 5.091 8 N -0.093 5.093 9 C -0.036 4.036 10 C 0.280 3.720 11 O -0.460 6.460 12 N -0.349 5.349 13 C -0.001 4.001 14 C -0.136 4.136 15 C -0.105 4.105 16 H 0.090 0.910 17 C -0.159 4.159 18 C 0.054 3.946 19 N -0.359 5.359 20 C -0.372 4.372 21 H 0.094 0.906 22 C -0.261 4.261 23 N -0.599 5.599 24 Si 0.805 3.195 25 H -0.194 1.194 26 H -0.217 1.217 27 H -0.217 1.217 28 C 0.007 3.993 29 H 0.073 0.927 30 H 0.120 0.880 31 H 0.056 0.944 32 H 0.144 0.856 33 H 0.119 0.881 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.194 0.806 37 H 0.215 0.785 38 H 0.267 0.733 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.102 0.898 42 H 0.125 0.875 43 H 0.103 0.897 44 H 0.097 0.903 45 H 0.021 0.979 46 H 0.025 0.975 47 H 0.056 0.944 48 H 0.046 0.954 49 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 11.490 28.455 0.761 30.696 hybrid contribution -0.629 -1.812 -0.379 1.955 sum 10.861 26.643 0.382 28.774 Atomic orbital electron populations 1.21832 0.92475 1.01794 1.04103 1.20132 0.97162 0.97059 0.88772 1.21855 1.01756 0.92052 1.04109 1.26834 0.93388 0.88490 0.98284 1.74857 1.20580 1.22624 0.99959 1.78574 1.08044 0.99981 1.23737 1.78785 1.20748 1.20820 0.88762 1.48149 1.34333 1.20030 1.06817 1.22580 0.98684 0.95710 0.86651 1.20877 0.87046 0.83373 0.80672 1.90854 1.29087 1.71984 1.54057 1.45634 1.24950 1.32933 1.31351 1.21313 0.92555 0.88855 0.97391 1.21597 0.98400 0.96384 0.97185 1.22164 0.99412 0.94153 0.94811 0.91002 1.22755 1.00212 0.94544 0.98381 1.20970 0.95391 0.93663 0.84604 1.44863 1.66705 1.18015 1.06293 1.19471 1.28579 0.95639 0.93531 0.90602 1.25642 1.02720 1.01256 0.96463 1.70197 1.52881 1.31267 1.05568 0.85037 0.77586 0.79035 0.77865 1.19374 1.21723 1.21675 1.21855 0.96353 0.86491 0.94643 0.92685 0.87952 0.94398 0.85552 0.88140 0.92857 0.91404 0.80648 0.78548 0.73342 0.91937 0.93703 0.89799 0.87531 0.89741 0.90339 0.97946 0.97497 0.94393 0.95381 0.95794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.18 71.98 0.66 -1.07 16 2 C -0.01 -0.09 3.26 -11.54 -0.04 -0.13 16 3 C -0.14 -0.79 9.18 71.98 0.66 -0.13 16 4 C 0.21 3.86 6.64 138.13 0.92 4.78 16 5 N -0.33 -8.87 12.36 -50.46 -0.62 -9.49 16 6 N -0.11 -3.35 13.43 37.01 0.50 -2.85 16 7 N -0.11 -2.78 13.29 37.02 0.49 -2.29 16 8 N -0.29 -5.23 2.83 -341.98 -0.97 -6.20 16 9 C 0.09 0.52 6.57 85.63 0.56 1.09 16 10 C 0.50 7.34 7.90 87.66 0.69 8.03 16 11 O -0.58 -16.56 16.43 -3.00 -0.05 -16.61 16 12 N -0.70 -6.78 5.56 -463.08 -2.57 -9.35 16 13 C 0.12 2.19 5.52 86.38 0.48 2.67 16 14 C -0.10 -1.55 4.85 30.60 0.15 -1.40 16 15 C -0.09 -2.41 3.07 -9.40 -0.03 -2.44 16 16 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 17 C -0.12 -3.82 6.42 31.79 0.20 -3.62 16 18 C 0.18 8.66 5.38 86.73 0.47 9.13 16 19 N -0.63 -32.79 3.39 -691.99 -2.35 -35.14 16 20 C -0.24 -14.03 10.28 84.03 0.86 -13.16 16 21 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 22 C -0.07 -3.96 5.49 84.86 0.47 -3.49 16 23 N -0.95 -57.91 10.31 21.65 0.22 -57.68 16 24 Si 0.98 46.89 29.55 68.60 2.03 48.92 16 25 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 26 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 27 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 28 C 0.13 5.16 5.89 86.86 0.51 5.67 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.13 0.22 6.84 -2.38 -0.02 0.20 16 33 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 34 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.18 0.01 8.14 -2.39 -0.02 -0.01 16 37 H 0.20 -1.14 7.12 -2.39 -0.02 -1.16 16 38 H 0.43 0.07 8.47 -92.70 -0.79 -0.71 16 39 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.04 1.11 7.46 -2.39 -0.02 1.09 16 41 H 0.08 1.21 8.10 -2.39 -0.02 1.19 16 42 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.08 2.17 8.04 -2.39 -0.02 2.15 16 45 H 0.00 0.13 7.53 -2.39 -0.02 0.11 16 46 H 0.01 0.37 7.36 -2.39 -0.02 0.36 16 47 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 48 H 0.03 1.13 8.07 -2.39 -0.02 1.11 16 49 H 0.02 0.92 8.00 -2.39 -0.02 0.90 16 Total: -1.00 -93.26 400.78 3.40 -89.86 By element: Atomic # 1 Polarization: -5.25 SS G_CDS: 0.16 Total: -5.08 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: 6.56 Total: 5.92 kcal Atomic # 7 Polarization: -117.70 SS G_CDS: -5.30 Total: -123.00 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.05 Total: -16.61 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -93.26 3.40 -89.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691912412.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.009 kcal (2) G-P(sol) polarization free energy of solvation -93.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds