Wall clock time and date at job start Tue Mar 31 2020 21:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.49964 * 2 1 4 4 C 1.53045 * 109.50005 * 239.93234 * 2 1 3 5 5 C 1.53040 * 109.53681 * 301.41864 * 4 2 1 6 6 C 1.53191 * 109.31010 * 298.62894 * 5 4 2 7 7 N 1.46921 * 108.77412 * 54.64079 * 6 5 4 8 8 C 1.34786 * 120.62950 * 126.36814 * 7 6 5 9 9 O 1.21277 * 119.99547 * 174.62861 * 8 7 6 10 10 C 1.50699 * 120.00091 * 354.90439 * 8 7 6 11 11 N 1.46496 * 109.47298 * 179.72705 * 10 8 7 12 12 N 1.28880 * 125.44807 * 269.71920 * 11 10 8 13 13 C 1.31040 * 107.91791 * 179.89706 * 12 11 10 14 14 N 1.33314 * 106.89783 * 0.35504 * 13 12 11 15 15 N 1.28781 * 125.45137 * 90.02254 * 11 10 8 16 16 C 1.46923 * 118.73708 * 306.63802 * 7 6 5 17 17 H 1.08997 * 109.58707 * 293.56840 * 16 7 6 18 18 C 1.53005 * 109.58232 * 173.14835 * 16 7 6 19 19 C 1.53005 * 109.46623 * 181.88592 * 18 16 7 20 20 C 1.53009 * 109.46741 * 185.10578 * 19 18 16 21 21 N 1.46502 * 109.46831 * 179.97438 * 20 19 18 22 22 C 1.36936 * 119.99736 * 179.97438 * 21 20 19 23 23 H 1.07998 * 120.00026 * 359.97438 * 22 21 20 24 24 C 1.38816 * 119.99925 * 180.02562 * 22 21 20 25 25 N 1.31621 * 119.99685 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 119.99909 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47307 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47124 * 120.00151 * 26 24 22 29 29 H 1.48500 * 109.47102 * 240.00139 * 26 24 22 30 30 H 1.09001 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47275 * 300.06138 * 1 2 3 32 32 H 1.09001 * 109.47253 * 60.06691 * 1 2 3 33 33 H 1.08994 * 109.45936 * 181.39114 * 4 2 1 34 34 H 1.09000 * 109.44174 * 61.42841 * 4 2 1 35 35 H 1.09006 * 109.49428 * 178.68246 * 5 4 2 36 36 H 1.08997 * 109.52483 * 58.60037 * 5 4 2 37 37 H 1.09001 * 109.58904 * 294.84841 * 6 5 4 38 38 H 1.09009 * 109.69840 * 174.49416 * 6 5 4 39 39 H 1.09004 * 109.46898 * 299.72822 * 10 8 7 40 40 H 1.09000 * 109.46920 * 59.72324 * 10 8 7 41 41 H 1.07997 * 126.55384 * 180.14003 * 13 12 11 42 42 H 1.09005 * 109.46938 * 301.87917 * 18 16 7 43 43 H 1.08994 * 109.47534 * 61.88134 * 18 16 7 44 44 H 1.08997 * 109.46964 * 305.09875 * 19 18 16 45 45 H 1.08998 * 109.47464 * 65.10306 * 19 18 16 46 46 H 1.08997 * 109.46817 * 299.99387 * 20 19 18 47 47 H 1.08998 * 109.47364 * 59.99666 * 20 19 18 48 48 H 0.96998 * 119.99692 * 0.02562 * 21 20 19 49 49 H 0.97000 * 119.99419 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0409 -0.7228 -1.2485 5 6 1.5030 -2.1555 -1.2666 6 6 2.0140 -2.9040 -0.0316 7 7 1.6515 -2.1385 1.1689 8 6 0.9739 -2.7225 2.1771 9 8 0.7655 -2.1096 3.2027 10 6 0.4807 -4.1391 2.0324 11 7 -0.2143 -4.5418 3.2576 12 7 0.3350 -5.1075 4.2770 13 6 -0.5971 -5.3136 5.1747 14 7 -1.7391 -4.8581 4.6590 15 7 -1.4728 -4.3923 3.4860 16 6 2.0364 -0.7227 1.2469 17 1 3.1222 -0.6415 1.2974 18 6 1.4134 -0.0898 2.4928 19 6 1.7771 1.3954 2.5463 20 6 1.2627 1.9996 3.8546 21 7 1.6115 3.4215 3.9062 22 6 1.2513 4.1759 4.9908 23 1 0.7098 3.7227 5.8079 24 6 1.5813 5.5234 5.0394 25 7 2.2399 6.0760 4.0428 26 14 1.0894 6.5526 6.5186 27 1 0.3624 5.7013 7.4943 28 1 2.3068 7.1109 7.1601 29 1 0.2085 7.6638 6.0776 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5147 0.8894 32 1 -0.3634 0.5128 -0.8906 33 1 3.1305 -0.7441 -1.2355 34 1 1.6986 -0.1952 -2.1388 35 1 1.8481 -2.6623 -2.1678 36 1 0.4133 -2.1356 -1.2550 37 1 3.0979 -3.0043 -0.0876 38 1 1.5574 -3.8928 0.0138 39 1 -0.2062 -4.2003 1.1882 40 1 1.3279 -4.8030 1.8603 41 1 -0.4661 -5.7688 6.1452 42 1 0.3294 -0.1971 2.4515 43 1 1.7943 -0.5895 3.3834 44 1 2.8603 1.5063 2.4962 45 1 1.3195 1.9123 1.7028 46 1 0.1795 1.8888 3.9048 47 1 1.7203 1.4828 4.6982 48 1 2.0968 3.8287 3.1717 49 1 2.4702 7.0177 4.0766 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692112206.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:45 Heat of formation + Delta-G solvation = 120.933380 kcal Electronic energy + Delta-G solvation = -30108.992846 eV Core-core repulsion = 26110.483111 eV Total energy + Delta-G solvation = -3998.509734 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.53530 -41.23958 -38.33283 -35.90830 -35.16475 -34.15255 -33.40559 -33.25086 -31.51577 -30.00756 -29.42576 -27.22623 -26.21176 -24.69918 -24.16888 -23.70898 -23.12865 -21.67979 -21.06024 -20.36368 -18.94354 -18.17366 -17.87649 -16.97359 -16.77671 -16.28315 -15.77685 -15.64015 -15.51724 -14.73878 -14.63658 -14.46936 -14.12104 -14.07290 -13.78552 -13.69159 -13.35197 -13.18123 -12.97538 -12.72973 -12.29417 -12.20720 -12.00286 -11.90548 -11.58697 -11.36728 -11.27052 -11.17858 -11.13542 -10.92152 -10.86136 -10.77676 -10.70054 -10.67869 -10.35683 -10.14979 -9.90627 -9.60926 -9.22078 -8.91526 -8.79059 -6.82515 -5.69341 -2.96787 0.93947 1.47121 2.04384 2.07275 2.51835 3.48502 3.54077 3.56872 3.70318 3.74727 4.12376 4.18206 4.25304 4.42078 4.50238 4.60935 4.66115 4.66596 4.83781 4.86470 5.05508 5.25373 5.29199 5.40273 5.45586 5.47192 5.48719 5.52640 5.57211 5.62571 5.65911 5.77741 5.78961 5.86124 5.88854 5.94682 6.11354 6.18946 6.24799 6.42424 6.45006 6.48501 6.74277 6.92435 7.04451 7.05948 7.68653 7.79010 8.14572 8.50559 9.61255 10.20958 10.56126 11.54080 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010255 B = 0.002988 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.605212 B = 9368.499495 C =11621.722093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.106 4.106 3 H 0.092 0.908 4 C -0.116 4.116 5 C -0.139 4.139 6 C 0.102 3.898 7 N -0.599 5.599 8 C 0.503 3.497 9 O -0.498 6.498 10 C 0.107 3.893 11 N -0.127 5.127 12 N -0.303 5.303 13 C 0.147 3.853 14 N -0.284 5.284 15 N -0.049 5.049 16 C 0.156 3.844 17 H 0.076 0.924 18 C -0.110 4.110 19 C -0.130 4.130 20 C 0.156 3.844 21 N -0.735 5.735 22 C -0.234 4.234 23 H 0.070 0.930 24 C -0.018 4.018 25 N -0.936 5.936 26 Si 0.906 3.094 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.236 0.764 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.016 0.984 47 H 0.017 0.983 48 H 0.382 0.618 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.081 -27.573 -14.383 31.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 H 0.110 0.890 4 C -0.154 4.154 5 C -0.177 4.177 6 C -0.021 4.021 7 N -0.333 5.333 8 C 0.286 3.714 9 O -0.372 6.372 10 C -0.017 4.017 11 N -0.038 5.038 12 N -0.152 5.152 13 C -0.157 4.157 14 N -0.155 5.155 15 N -0.043 5.043 16 C 0.054 3.946 17 H 0.094 0.906 18 C -0.148 4.148 19 C -0.168 4.168 20 C 0.029 3.971 21 N -0.379 5.379 22 C -0.365 4.365 23 H 0.088 0.912 24 C -0.213 4.213 25 N -0.586 5.586 26 Si 0.738 3.262 27 H -0.205 1.205 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.161 0.839 40 H 0.160 0.840 41 H 0.252 0.748 42 H 0.090 0.910 43 H 0.108 0.892 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.034 0.966 47 H 0.034 0.966 48 H 0.216 0.784 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.562 -26.925 -14.169 30.431 hybrid contribution 0.313 0.537 0.864 1.064 sum -0.248 -26.389 -13.305 29.554 Atomic orbital electron populations 1.21906 0.94661 1.01543 1.02424 1.21522 0.96979 1.00315 0.93727 0.88985 1.21570 1.00608 0.95019 0.98188 1.21979 1.01976 0.96642 0.97074 1.21871 1.01147 0.94464 0.84600 1.48063 1.55759 1.11955 1.17531 1.20162 0.79402 0.87376 0.84441 1.90934 1.55538 1.62693 1.27989 1.22126 0.99886 0.97326 0.82394 1.49493 1.04998 1.36015 1.13339 1.74697 1.27746 1.15859 0.96896 1.27349 0.84744 1.01983 1.01577 1.75896 1.25066 1.13437 1.01069 1.79010 0.97719 1.15614 1.11928 1.21410 0.98985 0.77611 0.96577 0.90589 1.22130 1.01548 0.94629 0.96455 1.21875 1.00870 0.94718 0.99337 1.20574 0.96626 0.85971 0.93932 1.42397 1.68497 1.04221 1.22738 1.19325 1.29010 0.91154 0.97046 0.91204 1.24731 1.01428 0.96909 0.98230 1.69677 1.45315 1.11845 1.31725 0.86112 0.77617 0.80352 0.82162 1.20548 1.21906 1.21895 0.92981 0.91561 0.92766 0.91635 0.91338 0.90543 0.90793 0.90395 0.90172 0.83894 0.84049 0.74779 0.90972 0.89228 0.92379 0.92117 0.96611 0.96558 0.78442 0.93693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.14 37.16 0.30 -1.19 16 2 C -0.11 -0.99 2.24 -90.72 -0.20 -1.19 16 3 H 0.09 0.98 6.85 -51.93 -0.36 0.62 16 4 C -0.12 -0.75 5.43 -26.69 -0.14 -0.89 16 5 C -0.14 -0.60 5.74 -26.61 -0.15 -0.76 16 6 C 0.10 0.41 6.35 -3.71 -0.02 0.39 16 7 N -0.60 -4.85 2.42 -165.47 -0.40 -5.25 16 8 C 0.50 5.07 7.60 -10.98 -0.08 4.99 16 9 O -0.50 -7.55 11.99 5.56 0.07 -7.49 16 10 C 0.11 0.71 5.44 -5.20 -0.03 0.68 16 11 N -0.13 -1.38 3.49 -11.72 -0.04 -1.42 16 12 N -0.30 -3.40 12.13 29.34 0.36 -3.04 16 13 C 0.15 1.51 13.26 -91.59 -1.21 0.30 16 14 N -0.28 -3.68 12.50 29.33 0.37 -3.31 16 15 N -0.05 -0.63 13.25 60.35 0.80 0.17 16 16 C 0.16 1.64 2.72 -67.82 -0.18 1.45 16 17 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 18 C -0.11 -1.60 2.63 -26.73 -0.07 -1.67 16 19 C -0.13 -2.23 4.73 -26.72 -0.13 -2.35 16 20 C 0.16 3.51 6.26 -4.04 -0.03 3.48 16 21 N -0.73 -20.01 5.60 -59.90 -0.34 -20.35 16 22 C -0.23 -6.99 9.99 -15.06 -0.15 -7.14 16 23 H 0.07 2.05 7.83 -52.49 -0.41 1.64 16 24 C -0.02 -0.53 5.50 -17.43 -0.10 -0.63 16 25 N -0.94 -29.35 13.06 55.49 0.72 -28.63 16 26 Si 0.91 23.41 29.55 -169.99 -5.02 18.38 16 27 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 29 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 30 H 0.05 0.48 5.97 -51.93 -0.31 0.17 16 31 H 0.07 0.84 6.08 -51.93 -0.32 0.52 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.07 0.36 6.34 -51.93 -0.33 0.03 16 37 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.08 0.09 5.93 -51.92 -0.31 -0.21 16 39 H 0.14 0.49 7.91 -51.93 -0.41 0.08 16 40 H 0.14 0.45 7.72 -51.93 -0.40 0.05 16 41 H 0.24 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.07 1.16 5.51 -51.93 -0.29 0.87 16 43 H 0.09 1.52 6.24 -51.93 -0.32 1.20 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.06 1.02 6.56 -51.93 -0.34 0.68 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.38 10.72 7.67 -40.82 -0.31 10.41 16 49 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 381.60 15.07 5.75 5.75 Total: -1.00 -38.41 381.60 -7.40 -45.82 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -7.47 Total: 3.90 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -2.20 Total: -4.53 kcal Atomic # 7 Polarization: -63.31 SS G_CDS: 1.47 Total: -61.84 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: 0.07 Total: -7.49 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -5.02 Total: 18.38 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -38.41 -7.40 -45.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692112206.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.753 kcal (2) G-P(sol) polarization free energy of solvation -38.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds