Wall clock time and date at job start Tue Mar 31 2020 21:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.49964 * 2 1 4 4 C 1.53045 * 109.50005 * 239.93234 * 2 1 3 5 5 C 1.53040 * 109.53681 * 301.41864 * 4 2 1 6 6 C 1.53191 * 109.31010 * 298.62894 * 5 4 2 7 7 N 1.46921 * 108.77412 * 54.64079 * 6 5 4 8 8 C 1.34786 * 120.62950 * 126.36814 * 7 6 5 9 9 O 1.21277 * 119.99547 * 174.62861 * 8 7 6 10 10 C 1.50699 * 120.00091 * 354.90439 * 8 7 6 11 11 N 1.46496 * 109.47298 * 179.72705 * 10 8 7 12 12 N 1.28880 * 125.44807 * 269.71920 * 11 10 8 13 13 C 1.31040 * 107.91791 * 179.89706 * 12 11 10 14 14 N 1.33314 * 106.89783 * 0.35504 * 13 12 11 15 15 N 1.28781 * 125.45137 * 90.02254 * 11 10 8 16 16 C 1.46923 * 118.73708 * 306.63802 * 7 6 5 17 17 H 1.08997 * 109.58707 * 293.56840 * 16 7 6 18 18 C 1.53005 * 109.58232 * 173.14835 * 16 7 6 19 19 C 1.53005 * 109.46623 * 181.88592 * 18 16 7 20 20 C 1.53009 * 109.46741 * 185.10578 * 19 18 16 21 21 N 1.46502 * 109.46831 * 179.97438 * 20 19 18 22 22 C 1.36936 * 119.99736 * 179.97438 * 21 20 19 23 23 H 1.07998 * 120.00026 * 359.97438 * 22 21 20 24 24 C 1.38816 * 119.99925 * 180.02562 * 22 21 20 25 25 N 1.31621 * 119.99685 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 119.99909 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47307 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47124 * 120.00151 * 26 24 22 29 29 H 1.48500 * 109.47102 * 240.00139 * 26 24 22 30 30 H 1.09001 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47275 * 300.06138 * 1 2 3 32 32 H 1.09001 * 109.47253 * 60.06691 * 1 2 3 33 33 H 1.08994 * 109.45936 * 181.39114 * 4 2 1 34 34 H 1.09000 * 109.44174 * 61.42841 * 4 2 1 35 35 H 1.09006 * 109.49428 * 178.68246 * 5 4 2 36 36 H 1.08997 * 109.52483 * 58.60037 * 5 4 2 37 37 H 1.09001 * 109.58904 * 294.84841 * 6 5 4 38 38 H 1.09009 * 109.69840 * 174.49416 * 6 5 4 39 39 H 1.09004 * 109.46898 * 299.72822 * 10 8 7 40 40 H 1.09000 * 109.46920 * 59.72324 * 10 8 7 41 41 H 1.07997 * 126.55384 * 180.14003 * 13 12 11 42 42 H 1.09005 * 109.46938 * 301.87917 * 18 16 7 43 43 H 1.08994 * 109.47534 * 61.88134 * 18 16 7 44 44 H 1.08997 * 109.46964 * 305.09875 * 19 18 16 45 45 H 1.08998 * 109.47464 * 65.10306 * 19 18 16 46 46 H 1.08997 * 109.46817 * 299.99387 * 20 19 18 47 47 H 1.08998 * 109.47364 * 59.99666 * 20 19 18 48 48 H 0.96998 * 119.99692 * 0.02562 * 21 20 19 49 49 H 0.97000 * 119.99419 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0409 -0.7228 -1.2485 5 6 1.5030 -2.1555 -1.2666 6 6 2.0140 -2.9040 -0.0316 7 7 1.6515 -2.1385 1.1689 8 6 0.9739 -2.7225 2.1771 9 8 0.7655 -2.1096 3.2027 10 6 0.4807 -4.1391 2.0324 11 7 -0.2143 -4.5418 3.2576 12 7 0.3350 -5.1075 4.2770 13 6 -0.5971 -5.3136 5.1747 14 7 -1.7391 -4.8581 4.6590 15 7 -1.4728 -4.3923 3.4860 16 6 2.0364 -0.7227 1.2469 17 1 3.1222 -0.6415 1.2974 18 6 1.4134 -0.0898 2.4928 19 6 1.7771 1.3954 2.5463 20 6 1.2627 1.9996 3.8546 21 7 1.6115 3.4215 3.9062 22 6 1.2513 4.1759 4.9908 23 1 0.7098 3.7227 5.8079 24 6 1.5813 5.5234 5.0394 25 7 2.2399 6.0760 4.0428 26 14 1.0894 6.5526 6.5186 27 1 0.3624 5.7013 7.4943 28 1 2.3068 7.1109 7.1601 29 1 0.2085 7.6638 6.0776 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5147 0.8894 32 1 -0.3634 0.5128 -0.8906 33 1 3.1305 -0.7441 -1.2355 34 1 1.6986 -0.1952 -2.1388 35 1 1.8481 -2.6623 -2.1678 36 1 0.4133 -2.1356 -1.2550 37 1 3.0979 -3.0043 -0.0876 38 1 1.5574 -3.8928 0.0138 39 1 -0.2062 -4.2003 1.1882 40 1 1.3279 -4.8030 1.8603 41 1 -0.4661 -5.7688 6.1452 42 1 0.3294 -0.1971 2.4515 43 1 1.7943 -0.5895 3.3834 44 1 2.8603 1.5063 2.4962 45 1 1.3195 1.9123 1.7028 46 1 0.1795 1.8888 3.9048 47 1 1.7203 1.4828 4.6982 48 1 2.0968 3.8287 3.1717 49 1 2.4702 7.0177 4.0766 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692112206.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:44 Heat of formation + Delta-G solvation = 94.100227 kcal Electronic energy + Delta-G solvation = -30110.156419 eV Core-core repulsion = 26110.483111 eV Total energy + Delta-G solvation = -3999.673307 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -45.34032 -41.99790 -39.11441 -37.38255 -36.16655 -35.33337 -34.45184 -34.07678 -33.16592 -31.06393 -30.55707 -28.21473 -27.26430 -25.91006 -24.97482 -24.75778 -24.32232 -23.05923 -22.03772 -21.41821 -19.62732 -19.21836 -18.89106 -18.57799 -17.58016 -17.09124 -16.78256 -16.58347 -16.34308 -16.31330 -15.47479 -15.36843 -15.31891 -15.24361 -14.91593 -14.80412 -14.71539 -14.22958 -13.73909 -13.64736 -13.46160 -13.22475 -12.98529 -12.97342 -12.82475 -12.77486 -12.48720 -12.25171 -12.12974 -12.11902 -12.03554 -11.98997 -11.95269 -11.73268 -11.62974 -11.53573 -11.31691 -11.17455 -11.00273 -10.17655 -9.63668 -9.08628 -8.01880 -5.31935 0.11085 0.84622 1.26045 1.34402 1.42313 1.44024 1.54769 1.85427 2.50840 3.11272 3.16208 3.30724 3.48486 3.64580 3.76029 3.83049 3.89539 3.95261 4.00212 4.09703 4.14343 4.20677 4.25998 4.47306 4.53419 4.61402 4.64857 4.68152 4.71998 4.77666 4.78609 4.83443 4.88266 4.96304 5.00797 5.04388 5.09905 5.16857 5.22956 5.25796 5.33537 5.40229 5.40429 5.45773 5.54280 5.68994 6.20874 6.27126 6.96413 7.26598 7.31613 7.99951 8.27284 9.21871 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010255 B = 0.002988 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.605212 B = 9368.499495 C =11621.722093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.104 4.104 3 H 0.073 0.927 4 C -0.113 4.113 5 C -0.135 4.135 6 C 0.093 3.907 7 N -0.591 5.591 8 C 0.496 3.504 9 O -0.561 6.561 10 C 0.103 3.897 11 N -0.121 5.121 12 N -0.315 5.315 13 C 0.146 3.854 14 N -0.316 5.316 15 N -0.073 5.073 16 C 0.161 3.839 17 H 0.081 0.919 18 C -0.090 4.090 19 C -0.114 4.114 20 C 0.157 3.843 21 N -0.745 5.745 22 C -0.255 4.255 23 H 0.068 0.932 24 C -0.072 4.072 25 N -0.967 5.967 26 Si 0.978 3.022 27 H -0.271 1.271 28 H -0.287 1.287 29 H -0.287 1.287 30 H 0.063 0.937 31 H 0.030 0.970 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.119 0.881 39 H 0.181 0.819 40 H 0.184 0.816 41 H 0.272 0.728 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.004 0.996 47 H 0.005 0.995 48 H 0.376 0.624 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.598 -29.791 -16.067 33.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 H 0.092 0.908 4 C -0.151 4.151 5 C -0.173 4.173 6 C -0.027 4.027 7 N -0.323 5.323 8 C 0.282 3.718 9 O -0.439 6.439 10 C -0.020 4.020 11 N -0.034 5.034 12 N -0.165 5.165 13 C -0.156 4.156 14 N -0.186 5.186 15 N -0.067 5.067 16 C 0.058 3.942 17 H 0.099 0.901 18 C -0.128 4.128 19 C -0.152 4.152 20 C 0.030 3.970 21 N -0.388 5.388 22 C -0.387 4.387 23 H 0.086 0.914 24 C -0.265 4.265 25 N -0.617 5.617 26 Si 0.806 3.194 27 H -0.195 1.195 28 H -0.213 1.213 29 H -0.214 1.214 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.123 0.877 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.137 0.863 39 H 0.198 0.802 40 H 0.202 0.798 41 H 0.287 0.713 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.022 0.978 47 H 0.023 0.977 48 H 0.208 0.792 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.116 -29.191 -15.903 33.242 hybrid contribution 0.139 1.223 1.356 1.831 sum 0.256 -27.968 -14.547 31.526 Atomic orbital electron populations 1.21858 0.95368 1.01878 1.01014 1.21473 0.96272 0.99737 0.94839 0.90842 1.21559 1.01075 0.96273 0.96175 1.21988 1.01747 0.95190 0.98330 1.22307 1.02638 0.95488 0.82281 1.48112 1.54704 1.10970 1.18558 1.20774 0.78721 0.88541 0.83760 1.90920 1.57985 1.64550 1.30464 1.22624 1.02016 0.95352 0.81979 1.49839 1.04592 1.34972 1.14027 1.74676 1.28086 1.16368 0.97340 1.28125 0.83785 1.01082 1.02640 1.75848 1.26573 1.14588 1.01601 1.78926 0.98968 1.16463 1.12368 1.21154 0.98800 0.79398 0.94829 0.90088 1.21844 1.00557 0.92460 0.97988 1.21726 1.00618 0.96502 0.96344 1.20677 0.95863 0.83988 0.96429 1.42571 1.68415 1.05799 1.21994 1.19660 1.29241 0.92013 0.97772 0.91444 1.25615 1.01555 0.97972 1.01338 1.69822 1.46191 1.12131 1.33583 0.85023 0.77347 0.78416 0.78658 1.19531 1.21335 1.21362 0.91775 0.95042 0.92024 0.90872 0.91016 0.87724 0.91109 0.88797 0.86266 0.80197 0.79846 0.71282 0.92760 0.91656 0.92122 0.91854 0.97792 0.97672 0.79223 0.93692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.14 71.98 0.59 -2.30 16 2 C -0.10 -1.86 2.24 -10.86 -0.02 -1.88 16 3 H 0.07 1.58 6.85 -2.39 -0.02 1.56 16 4 C -0.11 -1.15 5.43 30.62 0.17 -0.98 16 5 C -0.13 -0.60 5.74 30.67 0.18 -0.42 16 6 C 0.09 0.34 6.35 86.36 0.55 0.88 16 7 N -0.59 -8.33 2.42 -795.82 -1.92 -10.25 16 8 C 0.50 9.38 7.60 87.66 0.67 10.04 16 9 O -0.56 -17.57 11.99 -3.02 -0.04 -17.60 16 10 C 0.10 1.05 5.44 85.63 0.47 1.51 16 11 N -0.12 -2.47 3.49 -191.00 -0.67 -3.13 16 12 N -0.31 -6.70 12.13 -61.10 -0.74 -7.44 16 13 C 0.15 2.91 13.26 180.69 2.40 5.31 16 14 N -0.32 -8.20 12.50 -61.11 -0.76 -8.96 16 15 N -0.07 -1.88 13.25 37.02 0.49 -1.39 16 16 C 0.16 3.30 2.72 44.83 0.12 3.43 16 17 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 18 C -0.09 -2.79 2.63 30.60 0.08 -2.71 16 19 C -0.11 -4.12 4.73 30.60 0.14 -3.97 16 20 C 0.16 7.46 6.26 86.38 0.54 8.00 16 21 N -0.74 -42.20 5.60 -343.44 -1.92 -44.12 16 22 C -0.26 -15.65 9.99 84.03 0.84 -14.81 16 23 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 24 C -0.07 -4.41 5.50 84.86 0.47 -3.94 16 25 N -0.97 -61.49 13.06 21.65 0.28 -61.21 16 26 Si 0.98 48.59 29.55 68.60 2.03 50.62 16 27 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 28 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 29 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 30 H 0.06 1.10 5.97 -2.39 -0.01 1.09 16 31 H 0.03 0.84 6.08 -2.39 -0.01 0.82 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.10 -0.01 8.14 -2.38 -0.02 -0.03 16 36 H 0.07 0.41 6.34 -2.39 -0.02 0.39 16 37 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 38 H 0.12 -0.45 5.93 -2.38 -0.01 -0.47 16 39 H 0.18 0.46 7.91 -2.39 -0.02 0.44 16 40 H 0.18 0.27 7.72 -2.39 -0.02 0.26 16 41 H 0.27 2.65 8.06 -2.91 -0.02 2.63 16 42 H 0.05 1.87 5.51 -2.38 -0.01 1.86 16 43 H 0.06 2.37 6.24 -2.39 -0.01 2.35 16 44 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.06 2.25 6.56 -2.39 -0.02 2.24 16 46 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 47 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 48 H 0.38 21.89 7.67 -92.71 -0.71 21.18 16 49 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -88.50 381.60 4.18 -84.31 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.26 Total: 21.02 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 7.17 Total: -1.84 kcal Atomic # 7 Polarization: -131.26 SS G_CDS: -5.25 Total: -136.51 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.04 Total: -17.60 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.03 Total: 50.62 kcal Total: -88.50 4.18 -84.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692112206.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.414 kcal (2) G-P(sol) polarization free energy of solvation -88.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds