Wall clock time and date at job start Tue Mar 31 2020 21:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.50173 * 2 1 4 4 C 1.53046 * 109.52646 * 239.91777 * 2 1 3 5 5 C 1.53046 * 109.53555 * 301.39972 * 4 2 1 6 6 C 1.53186 * 109.31329 * 298.63169 * 5 4 2 7 7 N 1.46921 * 108.77528 * 54.63866 * 6 5 4 8 8 C 1.34780 * 120.63434 * 126.36788 * 7 6 5 9 9 O 1.21534 * 120.00347 * 186.14766 * 8 7 6 10 10 C 1.48003 * 119.99414 * 6.15110 * 8 7 6 11 11 N 1.34187 * 126.70055 * 7.33960 * 10 8 7 12 12 N 1.28990 * 107.25286 * 179.83274 * 11 10 8 13 13 N 1.28726 * 108.98539 * 0.43282 * 12 11 10 14 14 C 1.46498 * 125.32035 * 179.76138 * 13 12 11 15 15 N 1.28870 * 109.35983 * 359.72321 * 13 12 11 16 16 C 1.46923 * 118.74141 * 306.39119 * 7 6 5 17 17 H 1.09009 * 109.70308 * 293.75172 * 16 7 6 18 18 C 1.52998 * 109.59412 * 173.39733 * 16 7 6 19 19 C 1.52998 * 109.47487 * 178.17397 * 18 16 7 20 20 C 1.53004 * 109.46951 * 185.67333 * 19 18 16 21 21 N 1.46494 * 109.46889 * 179.97438 * 20 19 18 22 22 C 1.36944 * 119.99989 * 179.97438 * 21 20 19 23 23 H 1.07995 * 119.99752 * 0.02562 * 22 21 20 24 24 C 1.38809 * 119.99968 * 180.02562 * 22 21 20 25 25 N 1.31624 * 120.00240 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99800 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47401 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47112 * 120.00031 * 26 24 22 29 29 H 1.48503 * 109.47077 * 239.99852 * 26 24 22 30 30 H 1.08999 * 109.47237 * 299.93487 * 1 2 3 31 31 H 1.09006 * 109.47094 * 59.93544 * 1 2 3 32 32 H 1.09001 * 109.47480 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.45664 * 61.41860 * 4 2 1 34 34 H 1.08998 * 109.46417 * 181.38107 * 4 2 1 35 35 H 1.09004 * 109.49700 * 58.59142 * 5 4 2 36 36 H 1.09000 * 109.49295 * 178.67814 * 5 4 2 37 37 H 1.08997 * 109.58457 * 174.42333 * 6 5 4 38 38 H 1.09003 * 109.58843 * 294.70992 * 6 5 4 39 39 H 1.09003 * 109.46550 * 269.95976 * 14 13 12 40 40 H 1.08997 * 109.47207 * 29.95181 * 14 13 12 41 41 H 1.08995 * 109.47505 * 149.96266 * 14 13 12 42 42 H 1.08997 * 109.46564 * 298.17817 * 18 16 7 43 43 H 1.08998 * 109.46758 * 58.16811 * 18 16 7 44 44 H 1.09003 * 109.46729 * 305.66896 * 19 18 16 45 45 H 1.08995 * 109.47145 * 65.67456 * 19 18 16 46 46 H 1.08997 * 109.46854 * 300.00047 * 20 19 18 47 47 H 1.08995 * 109.47096 * 60.00093 * 20 19 18 48 48 H 0.97000 * 120.00437 * 0.02562 * 21 20 19 49 49 H 0.96992 * 120.00147 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0415 -0.7230 -1.2481 5 6 1.5043 -2.1560 -1.2658 6 6 2.0153 -2.9038 -0.0304 7 7 1.6521 -2.1381 1.1698 8 6 0.9745 -2.7219 2.1780 9 8 0.5825 -2.0533 3.1141 10 6 0.7079 -4.1773 2.1451 11 7 1.1902 -5.0611 1.2580 12 7 0.7238 -6.2198 1.5801 13 7 -0.0297 -6.0947 2.6162 14 6 -0.7458 -7.1871 3.2797 15 7 -0.0551 -4.8584 2.9792 16 6 2.0412 -0.7235 1.2498 17 1 3.1271 -0.6433 1.2999 18 6 1.4222 -0.0910 2.4978 19 6 1.8659 1.3695 2.6030 20 6 1.3640 1.9612 3.9217 21 7 1.7894 3.3594 4.0227 22 6 1.4534 4.0994 5.1249 23 1 0.8752 3.6521 5.9199 24 6 1.8560 5.4244 5.2204 25 7 2.5602 5.9697 4.2513 26 14 1.3971 6.4340 6.7235 27 1 0.6086 5.5951 7.6615 28 1 2.6326 6.9043 7.4000 29 1 0.5859 7.6051 6.3044 30 1 -0.3634 0.5128 0.8906 31 1 -0.3633 0.5149 -0.8895 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6995 -0.1960 -2.1388 34 1 3.1312 -0.7439 -1.2348 35 1 0.4145 -2.1361 -1.2543 36 1 1.8498 -2.6629 -2.1667 37 1 1.5571 -3.8918 0.0141 38 1 3.0990 -3.0058 -0.0872 39 1 -1.7350 -7.2958 2.8350 40 1 -0.1879 -8.1152 3.1559 41 1 -0.8474 -6.9629 4.3415 42 1 0.3354 -0.1365 2.4271 43 1 1.7517 -0.6356 3.3826 44 1 2.9542 1.4216 2.5723 45 1 1.4512 1.9361 1.7694 46 1 0.2757 1.9089 3.9525 47 1 1.7787 1.3945 4.7554 48 1 2.3084 3.7613 3.3085 49 1 2.8412 6.8957 4.3178 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692116606.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:36 Heat of formation + Delta-G solvation = 130.360803 kcal Electronic energy + Delta-G solvation = -29974.684983 eV Core-core repulsion = 25976.584052 eV Total energy + Delta-G solvation = -3998.100931 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.81028 -40.91869 -37.96667 -35.99865 -35.38644 -33.92319 -33.54415 -33.21337 -31.40600 -29.63208 -29.35668 -27.29590 -26.44693 -25.17950 -24.22252 -23.67385 -23.06317 -21.57703 -21.07543 -20.33358 -19.01916 -18.03673 -17.86581 -17.07735 -16.80557 -16.36607 -15.73195 -15.42855 -14.79860 -14.61550 -14.51035 -14.34329 -13.98082 -13.85113 -13.77488 -13.61660 -13.28543 -13.22926 -13.10951 -12.62638 -12.55254 -12.16749 -11.91949 -11.79578 -11.51935 -11.50731 -11.39338 -11.01655 -10.96611 -10.85888 -10.77513 -10.71497 -10.67032 -10.35415 -10.26680 -9.98652 -9.86016 -9.56989 -9.26783 -8.75175 -8.66630 -6.78046 -5.65669 -2.92859 0.62430 1.08324 1.34155 2.46259 2.86311 3.50593 3.54605 3.56050 3.58730 3.67970 4.29268 4.33168 4.56491 4.60758 4.69029 4.71870 4.72216 4.79168 4.88770 5.06065 5.09302 5.26886 5.37598 5.46323 5.53668 5.58530 5.64258 5.66644 5.70740 5.71445 5.78606 5.88732 5.92984 6.02096 6.06657 6.08477 6.22997 6.34255 6.40635 6.50991 6.55239 6.56836 6.85608 7.07560 7.12696 7.15852 7.68584 7.82183 7.93471 8.54370 9.64835 10.25641 10.60510 11.57799 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014851 B = 0.002545 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.965517 B =10997.229502 C =12536.884342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 H 0.091 0.909 4 C -0.117 4.117 5 C -0.135 4.135 6 C 0.081 3.919 7 N -0.582 5.582 8 C 0.608 3.392 9 O -0.488 6.488 10 C 0.136 3.864 11 N -0.258 5.258 12 N -0.060 5.060 13 N -0.133 5.133 14 C 0.091 3.909 15 N -0.247 5.247 16 C 0.155 3.845 17 H 0.080 0.920 18 C -0.111 4.111 19 C -0.130 4.130 20 C 0.156 3.844 21 N -0.735 5.735 22 C -0.232 4.232 23 H 0.070 0.930 24 C -0.019 4.019 25 N -0.936 5.936 26 Si 0.906 3.094 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.123 0.877 38 H 0.072 0.928 39 H 0.106 0.894 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.017 0.983 47 H 0.017 0.983 48 H 0.382 0.618 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.362 -30.072 -12.279 32.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 H 0.109 0.891 4 C -0.154 4.154 5 C -0.173 4.173 6 C -0.042 4.042 7 N -0.315 5.315 8 C 0.389 3.611 9 O -0.358 6.358 10 C -0.148 4.148 11 N -0.132 5.132 12 N -0.053 5.053 13 N -0.047 5.047 14 C -0.048 4.048 15 N -0.100 5.100 16 C 0.053 3.947 17 H 0.097 0.903 18 C -0.149 4.149 19 C -0.168 4.168 20 C 0.029 3.971 21 N -0.379 5.379 22 C -0.363 4.363 23 H 0.088 0.912 24 C -0.214 4.214 25 N -0.586 5.586 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.220 1.220 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.140 0.860 38 H 0.090 0.910 39 H 0.124 0.876 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.098 0.902 43 H 0.104 0.896 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.035 0.965 47 H 0.035 0.965 48 H 0.216 0.784 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.656 -30.304 -11.750 32.834 hybrid contribution -0.053 1.026 0.649 1.215 sum -4.710 -29.278 -11.102 31.664 Atomic orbital electron populations 1.21900 0.94789 1.01597 1.02222 1.21574 0.96874 1.00128 0.93810 0.89058 1.21592 1.00603 0.95322 0.97927 1.21957 1.01586 0.96273 0.97517 1.22530 1.01358 0.97105 0.83215 1.47841 1.54569 1.11801 1.17319 1.16321 0.79677 0.81575 0.83515 1.90984 1.49635 1.60440 1.34780 1.25647 0.98326 0.98668 0.92151 1.75920 1.20754 0.94786 1.21746 1.78936 1.05391 1.19020 1.01999 1.50248 1.29549 1.06624 1.18238 1.22579 0.97428 0.85300 0.99521 1.75145 1.20081 0.91322 1.23469 1.21563 0.99008 0.77403 0.96702 0.90253 1.22194 1.01858 0.94782 0.96026 1.21871 1.00735 0.95009 0.99223 1.20584 0.96450 0.86266 0.93825 1.42415 1.65347 1.07137 1.23009 1.19323 1.27191 0.92807 0.97004 0.91196 1.24734 1.01214 0.97162 0.98322 1.69674 1.42777 1.13313 1.32816 0.86116 0.77502 0.80245 0.82400 1.20582 1.21967 1.21960 0.91528 0.92867 0.92987 0.91580 0.91658 0.91325 0.90742 0.85971 0.90975 0.87557 0.86542 0.86628 0.90211 0.89608 0.92380 0.92108 0.96480 0.96485 0.78434 0.93723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.20 37.16 0.30 -1.40 16 2 C -0.10 -1.15 2.36 -90.50 -0.21 -1.36 16 3 H 0.09 1.06 6.94 -51.93 -0.36 0.70 16 4 C -0.12 -1.02 5.43 -26.68 -0.14 -1.16 16 5 C -0.14 -1.10 5.74 -26.61 -0.15 -1.25 16 6 C 0.08 0.75 6.13 -3.72 -0.02 0.73 16 7 N -0.58 -6.83 2.41 -166.27 -0.40 -7.23 16 8 C 0.61 8.39 7.62 -12.26 -0.09 8.29 16 9 O -0.49 -8.15 12.51 5.34 0.07 -8.08 16 10 C 0.14 1.70 7.81 -156.24 -1.22 0.48 16 11 N -0.26 -2.86 9.04 32.10 0.29 -2.57 16 12 N -0.06 -0.58 13.23 60.35 0.80 0.21 16 13 N -0.13 -1.10 4.39 -16.65 -0.07 -1.18 16 14 C 0.09 0.19 11.62 59.85 0.70 0.88 16 15 N -0.25 -2.89 12.17 32.11 0.39 -2.50 16 16 C 0.15 1.91 2.69 -67.60 -0.18 1.73 16 17 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 18 C -0.11 -1.70 2.70 -26.73 -0.07 -1.78 16 19 C -0.13 -2.28 4.88 -26.73 -0.13 -2.41 16 20 C 0.16 3.49 6.26 -4.04 -0.03 3.47 16 21 N -0.74 -20.04 5.60 -59.91 -0.34 -20.37 16 22 C -0.23 -6.91 9.99 -15.06 -0.15 -7.06 16 23 H 0.07 2.04 7.83 -52.49 -0.41 1.63 16 24 C -0.02 -0.58 5.50 -17.43 -0.10 -0.67 16 25 N -0.94 -29.46 13.06 55.49 0.72 -28.73 16 26 Si 0.91 23.39 29.55 -169.99 -5.02 18.37 16 27 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 29 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 30 H 0.07 0.89 6.30 -51.93 -0.33 0.56 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.60 5.97 -51.93 -0.31 0.29 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.61 6.34 -51.93 -0.33 0.28 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.12 1.18 4.11 -71.25 -0.29 0.88 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.11 0.02 8.14 -51.93 -0.42 -0.40 16 40 H 0.12 -0.04 8.14 -51.93 -0.42 -0.46 16 41 H 0.12 0.11 8.14 -51.93 -0.42 -0.31 16 42 H 0.08 1.31 5.20 -51.93 -0.27 1.04 16 43 H 0.09 1.48 6.32 -51.93 -0.33 1.15 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.06 1.04 6.94 -51.93 -0.36 0.68 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.38 10.77 7.67 -40.82 -0.31 10.46 16 49 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 379.87 15.07 5.72 5.72 Total: -1.00 -36.46 379.87 -6.85 -43.31 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -7.51 Total: 4.55 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -1.50 Total: -1.51 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: 1.39 Total: -62.36 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.07 Total: -8.08 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -5.02 Total: 18.37 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.46 -6.85 -43.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692116606.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.671 kcal (2) G-P(sol) polarization free energy of solvation -36.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds