Wall clock time and date at job start Tue Mar 31 2020 21:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.50173 * 2 1 4 4 C 1.53046 * 109.52646 * 239.91777 * 2 1 3 5 5 C 1.53046 * 109.53555 * 301.39972 * 4 2 1 6 6 C 1.53186 * 109.31329 * 298.63169 * 5 4 2 7 7 N 1.46921 * 108.77528 * 54.63866 * 6 5 4 8 8 C 1.34780 * 120.63434 * 126.36788 * 7 6 5 9 9 O 1.21534 * 120.00347 * 186.14766 * 8 7 6 10 10 C 1.48003 * 119.99414 * 6.15110 * 8 7 6 11 11 N 1.34187 * 126.70055 * 7.33960 * 10 8 7 12 12 N 1.28990 * 107.25286 * 179.83274 * 11 10 8 13 13 N 1.28726 * 108.98539 * 0.43282 * 12 11 10 14 14 C 1.46498 * 125.32035 * 179.76138 * 13 12 11 15 15 N 1.28870 * 109.35983 * 359.72321 * 13 12 11 16 16 C 1.46923 * 118.74141 * 306.39119 * 7 6 5 17 17 H 1.09009 * 109.70308 * 293.75172 * 16 7 6 18 18 C 1.52998 * 109.59412 * 173.39733 * 16 7 6 19 19 C 1.52998 * 109.47487 * 178.17397 * 18 16 7 20 20 C 1.53004 * 109.46951 * 185.67333 * 19 18 16 21 21 N 1.46494 * 109.46889 * 179.97438 * 20 19 18 22 22 C 1.36944 * 119.99989 * 179.97438 * 21 20 19 23 23 H 1.07995 * 119.99752 * 0.02562 * 22 21 20 24 24 C 1.38809 * 119.99968 * 180.02562 * 22 21 20 25 25 N 1.31624 * 120.00240 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99800 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47401 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47112 * 120.00031 * 26 24 22 29 29 H 1.48503 * 109.47077 * 239.99852 * 26 24 22 30 30 H 1.08999 * 109.47237 * 299.93487 * 1 2 3 31 31 H 1.09006 * 109.47094 * 59.93544 * 1 2 3 32 32 H 1.09001 * 109.47480 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.45664 * 61.41860 * 4 2 1 34 34 H 1.08998 * 109.46417 * 181.38107 * 4 2 1 35 35 H 1.09004 * 109.49700 * 58.59142 * 5 4 2 36 36 H 1.09000 * 109.49295 * 178.67814 * 5 4 2 37 37 H 1.08997 * 109.58457 * 174.42333 * 6 5 4 38 38 H 1.09003 * 109.58843 * 294.70992 * 6 5 4 39 39 H 1.09003 * 109.46550 * 269.95976 * 14 13 12 40 40 H 1.08997 * 109.47207 * 29.95181 * 14 13 12 41 41 H 1.08995 * 109.47505 * 149.96266 * 14 13 12 42 42 H 1.08997 * 109.46564 * 298.17817 * 18 16 7 43 43 H 1.08998 * 109.46758 * 58.16811 * 18 16 7 44 44 H 1.09003 * 109.46729 * 305.66896 * 19 18 16 45 45 H 1.08995 * 109.47145 * 65.67456 * 19 18 16 46 46 H 1.08997 * 109.46854 * 300.00047 * 20 19 18 47 47 H 1.08995 * 109.47096 * 60.00093 * 20 19 18 48 48 H 0.97000 * 120.00437 * 0.02562 * 21 20 19 49 49 H 0.96992 * 120.00147 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0415 -0.7230 -1.2481 5 6 1.5043 -2.1560 -1.2658 6 6 2.0153 -2.9038 -0.0304 7 7 1.6521 -2.1381 1.1698 8 6 0.9745 -2.7219 2.1780 9 8 0.5825 -2.0533 3.1141 10 6 0.7079 -4.1773 2.1451 11 7 1.1902 -5.0611 1.2580 12 7 0.7238 -6.2198 1.5801 13 7 -0.0297 -6.0947 2.6162 14 6 -0.7458 -7.1871 3.2797 15 7 -0.0551 -4.8584 2.9792 16 6 2.0412 -0.7235 1.2498 17 1 3.1271 -0.6433 1.2999 18 6 1.4222 -0.0910 2.4978 19 6 1.8659 1.3695 2.6030 20 6 1.3640 1.9612 3.9217 21 7 1.7894 3.3594 4.0227 22 6 1.4534 4.0994 5.1249 23 1 0.8752 3.6521 5.9199 24 6 1.8560 5.4244 5.2204 25 7 2.5602 5.9697 4.2513 26 14 1.3971 6.4340 6.7235 27 1 0.6086 5.5951 7.6615 28 1 2.6326 6.9043 7.4000 29 1 0.5859 7.6051 6.3044 30 1 -0.3634 0.5128 0.8906 31 1 -0.3633 0.5149 -0.8895 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6995 -0.1960 -2.1388 34 1 3.1312 -0.7439 -1.2348 35 1 0.4145 -2.1361 -1.2543 36 1 1.8498 -2.6629 -2.1667 37 1 1.5571 -3.8918 0.0141 38 1 3.0990 -3.0058 -0.0872 39 1 -1.7350 -7.2958 2.8350 40 1 -0.1879 -8.1152 3.1559 41 1 -0.8474 -6.9629 4.3415 42 1 0.3354 -0.1365 2.4271 43 1 1.7517 -0.6356 3.3826 44 1 2.9542 1.4216 2.5723 45 1 1.4512 1.9361 1.7694 46 1 0.2757 1.9089 3.9525 47 1 1.7787 1.3945 4.7554 48 1 2.3084 3.7613 3.3085 49 1 2.8412 6.8957 4.3178 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692116606.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:35 Heat of formation + Delta-G solvation = 105.445408 kcal Electronic energy + Delta-G solvation = -29975.765396 eV Core-core repulsion = 25976.584052 eV Total energy + Delta-G solvation = -3999.181343 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -45.57835 -41.90895 -38.95945 -37.34151 -36.48050 -35.26427 -34.41268 -34.31167 -33.11621 -31.04759 -30.00866 -28.44328 -27.37305 -26.58252 -25.25525 -24.73070 -24.24056 -23.02223 -22.01580 -21.68421 -19.85862 -19.14325 -18.76064 -18.61682 -17.75579 -17.39954 -16.87162 -16.54267 -16.33659 -15.78926 -15.62052 -15.23486 -15.21722 -15.17299 -14.87228 -14.58076 -14.32308 -14.15412 -14.10736 -13.69610 -13.46565 -13.28024 -13.16647 -12.95148 -12.80385 -12.74958 -12.51292 -12.46059 -12.26850 -12.13153 -12.07113 -11.95183 -11.79450 -11.67170 -11.62748 -11.33745 -11.28344 -11.03097 -10.93087 -10.42768 -9.62954 -9.01799 -7.96582 -5.25900 -0.16845 0.22309 0.79697 1.45507 1.47216 1.57762 1.60747 1.87025 2.54884 2.67853 2.99458 3.36148 3.54661 3.78330 3.86956 3.93348 3.99906 4.05025 4.12362 4.20113 4.22439 4.25399 4.32150 4.44192 4.54850 4.58206 4.61808 4.67011 4.72716 4.72816 4.79895 4.92522 4.96304 4.98191 5.04599 5.08020 5.11678 5.19153 5.26425 5.28272 5.34003 5.45007 5.47126 5.50270 5.53613 5.73151 6.16293 6.26500 6.78311 7.04277 7.31967 8.07129 8.33413 9.27278 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014851 B = 0.002545 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.965517 B =10997.229502 C =12536.884342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.103 4.103 3 H 0.086 0.914 4 C -0.112 4.112 5 C -0.130 4.130 6 C 0.078 3.922 7 N -0.575 5.575 8 C 0.603 3.397 9 O -0.530 6.530 10 C 0.120 3.880 11 N -0.261 5.261 12 N -0.061 5.061 13 N -0.115 5.115 14 C 0.072 3.928 15 N -0.269 5.269 16 C 0.157 3.843 17 H 0.090 0.910 18 C -0.094 4.094 19 C -0.113 4.113 20 C 0.156 3.844 21 N -0.746 5.746 22 C -0.249 4.249 23 H 0.070 0.930 24 C -0.076 4.076 25 N -0.968 5.968 26 Si 0.977 3.023 27 H -0.269 1.269 28 H -0.289 1.289 29 H -0.289 1.289 30 H 0.041 0.959 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.122 0.878 38 H 0.086 0.914 39 H 0.130 0.870 40 H 0.144 0.856 41 H 0.127 0.873 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.010 0.990 47 H 0.009 0.991 48 H 0.375 0.625 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.365 -31.778 -13.275 34.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.122 4.122 3 H 0.105 0.895 4 C -0.149 4.149 5 C -0.168 4.168 6 C -0.044 4.044 7 N -0.307 5.307 8 C 0.385 3.615 9 O -0.404 6.404 10 C -0.163 4.163 11 N -0.135 5.135 12 N -0.054 5.054 13 N -0.030 5.030 14 C -0.064 4.064 15 N -0.124 5.124 16 C 0.055 3.945 17 H 0.108 0.892 18 C -0.132 4.132 19 C -0.152 4.152 20 C 0.029 3.971 21 N -0.389 5.389 22 C -0.381 4.381 23 H 0.088 0.912 24 C -0.268 4.268 25 N -0.619 5.619 26 Si 0.805 3.195 27 H -0.194 1.194 28 H -0.216 1.216 29 H -0.216 1.216 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.118 0.882 37 H 0.139 0.861 38 H 0.105 0.895 39 H 0.148 0.852 40 H 0.163 0.837 41 H 0.146 0.854 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.028 0.972 47 H 0.027 0.973 48 H 0.207 0.793 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.661 -32.071 -12.779 34.836 hybrid contribution -0.120 1.388 0.984 1.706 sum -4.781 -30.683 -11.795 33.218 Atomic orbital electron populations 1.21850 0.95403 1.01281 1.01568 1.21563 0.96285 1.00026 0.94323 0.89548 1.21575 1.01240 0.95349 0.96766 1.21944 1.01095 0.95945 0.97775 1.22734 1.02271 0.96903 0.82465 1.47911 1.53595 1.11553 1.17653 1.16561 0.79391 0.82197 0.83323 1.90956 1.51573 1.61566 1.36308 1.25332 0.99557 0.98245 0.93203 1.75890 1.21053 0.94842 1.21692 1.78859 1.05663 1.18405 1.02488 1.50764 1.28334 1.06542 1.17373 1.23250 0.98551 0.84531 1.00084 1.75101 1.20535 0.92747 1.23971 1.21483 0.99289 0.77927 0.95791 0.89193 1.21942 1.01094 0.93086 0.97118 1.21707 1.00716 0.96199 0.96548 1.20699 0.95910 0.84229 0.96227 1.42598 1.65305 1.08701 1.22263 1.19672 1.27153 0.93536 0.97736 0.91216 1.25613 1.01435 0.98266 1.01527 1.69823 1.43807 1.13557 1.34722 0.85028 0.77238 0.78396 0.78826 1.19368 1.21598 1.21575 0.94001 0.91625 0.93147 0.90413 0.90545 0.92091 0.88228 0.86058 0.89539 0.85180 0.83747 0.85435 0.91581 0.91579 0.91966 0.91620 0.97236 0.97294 0.79261 0.93831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.20 71.98 0.59 -2.70 16 2 C -0.10 -2.15 2.36 -10.71 -0.03 -2.17 16 3 H 0.09 1.91 6.94 -2.39 -0.02 1.90 16 4 C -0.11 -1.66 5.43 30.62 0.17 -1.50 16 5 C -0.13 -1.78 5.74 30.67 0.18 -1.60 16 6 C 0.08 1.31 6.13 86.36 0.53 1.84 16 7 N -0.58 -13.30 2.41 -798.24 -1.93 -15.22 16 8 C 0.60 17.06 7.62 86.83 0.66 17.73 16 9 O -0.53 -18.67 12.51 -3.82 -0.05 -18.72 16 10 C 0.12 3.01 7.81 137.15 1.07 4.08 16 11 N -0.26 -5.56 9.04 -52.36 -0.47 -6.04 16 12 N -0.06 -1.10 13.23 37.02 0.49 -0.61 16 13 N -0.11 -1.75 4.39 -206.59 -0.91 -2.66 16 14 C 0.07 0.13 11.62 127.77 1.49 1.61 16 15 N -0.27 -6.24 12.17 -52.31 -0.64 -6.88 16 16 C 0.16 3.82 2.69 44.98 0.12 3.94 16 17 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 18 C -0.09 -3.01 2.70 30.59 0.08 -2.93 16 19 C -0.11 -4.07 4.88 30.60 0.15 -3.92 16 20 C 0.16 7.21 6.26 86.38 0.54 7.75 16 21 N -0.75 -41.61 5.60 -343.47 -1.92 -43.53 16 22 C -0.25 -15.06 9.99 84.03 0.84 -14.22 16 23 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 24 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 25 N -0.97 -61.49 13.06 21.65 0.28 -61.21 16 26 Si 0.98 48.31 29.55 68.60 2.03 50.34 16 27 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 28 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 29 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 30 H 0.04 1.15 6.30 -2.39 -0.02 1.14 16 31 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.05 1.15 5.97 -2.39 -0.01 1.14 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.06 0.96 6.34 -2.38 -0.02 0.94 16 36 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.12 2.16 4.11 -27.37 -0.11 2.05 16 38 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.13 -0.31 8.14 -2.39 -0.02 -0.33 16 40 H 0.14 -0.52 8.14 -2.39 -0.02 -0.54 16 41 H 0.13 -0.02 8.14 -2.39 -0.02 -0.04 16 42 H 0.07 2.30 5.20 -2.39 -0.01 2.29 16 43 H 0.07 2.39 6.32 -2.39 -0.02 2.38 16 44 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.07 2.29 6.94 -2.39 -0.02 2.28 16 46 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 47 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 48 H 0.38 21.65 7.67 -92.71 -0.71 20.94 16 49 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -80.07 379.87 3.91 -76.16 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 0.17 Total: 24.59 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: 6.86 Total: 3.77 kcal Atomic # 7 Polarization: -131.05 SS G_CDS: -5.09 Total: -136.14 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.05 Total: -18.72 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 2.03 Total: 50.34 kcal Total: -80.07 3.91 -76.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692116606.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.608 kcal (2) G-P(sol) polarization free energy of solvation -80.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds