Wall clock time and date at job start Tue Mar 31 2020 19:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86790 * 120.00239 * 2 1 4 4 H 1.48502 * 109.47298 * 239.99859 * 3 2 1 5 5 H 1.48505 * 109.47334 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47081 * 119.99748 * 3 2 1 7 7 C 1.38816 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99773 * 157.54796 * 7 2 1 9 9 N 1.36935 * 120.00022 * 337.55027 * 7 2 1 10 10 C 1.46508 * 119.99864 * 326.30485 * 9 7 2 11 11 C 1.52993 * 109.47221 * 265.52618 * 10 9 7 12 12 N 1.46499 * 109.47009 * 180.02562 * 11 10 9 13 13 C 1.34780 * 120.00057 * 180.02562 * 12 11 10 14 14 O 1.21287 * 119.99706 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00162 * 179.97438 * 13 12 11 16 16 N 1.46499 * 109.47007 * 180.02562 * 15 13 12 17 17 C 1.34594 * 126.43766 * 125.00865 * 16 15 13 18 18 N 1.31077 * 106.68093 * 179.97438 * 17 16 15 19 19 N 1.28842 * 107.98685 * 359.97438 * 18 17 16 20 20 N 1.28733 * 109.40018 * 359.73260 * 19 18 17 21 21 C 1.46505 * 120.00085 * 146.30952 * 9 7 2 22 22 C 1.50468 * 109.62602 * 300.95759 * 21 9 7 23 23 C 1.54068 * 112.50293 * 213.85413 * 22 21 9 24 24 C 1.54059 * 112.81757 * 318.29153 * 23 22 21 25 25 C 1.50476 * 112.49631 * 318.27681 * 24 23 22 26 26 C 1.54241 * 108.50939 * 94.15822 * 25 24 23 27 27 C 1.45542 * 112.40838 * 279.99894 * 26 25 24 28 28 H 0.97000 * 119.99977 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.46893 * 25.53334 * 10 9 7 30 30 H 1.09006 * 109.46784 * 145.53093 * 10 9 7 31 31 H 1.09003 * 109.47701 * 300.00019 * 11 10 9 32 32 H 1.09000 * 109.47074 * 60.00143 * 11 10 9 33 33 H 0.97002 * 120.00040 * 0.02562 * 12 11 10 34 34 H 1.08994 * 109.47521 * 300.00439 * 15 13 12 35 35 H 1.09006 * 109.46724 * 60.00528 * 15 13 12 36 36 H 1.08002 * 126.66333 * 359.95785 * 17 16 15 37 37 H 1.09002 * 109.62401 * 180.38142 * 21 9 7 38 38 H 1.09006 * 108.87891 * 334.64170 * 22 21 9 39 39 H 1.09001 * 108.87307 * 93.17572 * 22 21 9 40 40 H 1.08994 * 108.81487 * 197.42339 * 23 22 21 41 41 H 1.09002 * 108.81050 * 79.14901 * 23 22 21 42 42 H 1.09003 * 108.87587 * 197.50186 * 24 23 22 43 43 H 1.08997 * 108.88123 * 79.05509 * 24 23 22 44 44 H 1.08994 * 109.63366 * 213.86670 * 25 24 23 45 45 H 1.09001 * 109.62846 * 334.25864 * 25 24 23 46 46 H 1.08996 * 108.89878 * 40.75559 * 26 25 24 47 47 H 1.09004 * 108.89058 * 159.25228 * 26 25 24 48 48 H 1.09005 * 108.89311 * 182.69853 * 27 26 25 49 49 H 1.08998 * 108.90052 * 301.27989 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0288 -1.2378 -0.3566 9 7 1.4033 -2.3429 0.4539 10 6 0.4319 -2.2705 1.5482 11 6 1.1397 -2.5419 2.8772 12 7 0.1681 -2.4701 3.9714 13 6 0.5677 -2.6764 5.2420 14 8 1.7316 -2.9211 5.4795 15 6 -0.4315 -2.6019 6.3676 16 7 0.2464 -2.8607 7.6402 17 6 0.2423 -2.0636 8.7248 18 7 0.9657 -2.6658 9.6370 19 7 1.3914 -3.7751 9.1388 20 7 0.9537 -3.8989 7.9345 21 6 1.7255 -3.6358 -0.1553 22 6 1.4061 -3.5955 -1.6251 23 6 0.9113 -4.9536 -2.1585 24 6 1.7120 -6.1438 -1.5966 25 6 3.1909 -5.8705 -1.5466 26 6 3.5435 -5.3395 -0.1420 27 6 3.2310 -3.9263 0.0115 28 1 -0.4850 0.8400 -0.0004 29 1 -0.0160 -1.2771 1.5713 30 1 -0.3471 -3.0168 1.3925 31 1 1.5876 -3.5354 2.8542 32 1 1.9187 -1.7957 3.0330 33 1 -0.7627 -2.2740 3.7814 34 1 -0.8798 -1.6087 6.3905 35 1 -1.2104 -3.3486 6.2120 36 1 -0.2594 -1.1124 8.8240 37 1 1.1452 -4.4225 0.3270 38 1 0.6336 -2.8461 -1.7978 39 1 2.3036 -3.3088 -2.1732 40 1 0.9943 -4.9558 -3.2453 41 1 -0.1375 -5.0764 -1.8880 42 1 1.5356 -7.0161 -2.2260 43 1 1.3594 -6.3616 -0.5885 44 1 3.7403 -6.7921 -1.7382 45 1 3.4513 -5.1258 -2.2987 46 1 2.9837 -5.9075 0.6010 47 1 4.6093 -5.4863 0.0335 48 1 3.5457 -3.6009 1.0031 49 1 3.7836 -3.3591 -0.7375 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699684998.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:37 Heat of formation + Delta-G solvation = 96.982786 kcal Electronic energy + Delta-G solvation = -29765.026603 eV Core-core repulsion = 25765.478293 eV Total energy + Delta-G solvation = -3999.548310 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.24967 -39.70994 -38.63526 -35.99458 -35.41489 -34.25570 -32.53424 -31.95388 -31.74910 -30.56813 -29.27584 -27.33937 -24.75320 -24.02698 -23.93410 -23.78268 -22.86176 -20.91912 -20.63763 -19.99076 -18.75458 -17.99058 -17.88491 -16.60168 -16.26538 -16.12452 -15.67854 -15.47301 -15.24354 -14.60702 -14.36233 -14.13541 -14.04288 -13.69708 -13.58051 -13.39226 -12.89515 -12.73245 -12.55032 -12.41351 -12.21278 -11.84994 -11.58506 -11.53200 -11.27931 -11.23314 -11.07726 -10.96137 -10.65370 -10.53357 -10.46985 -10.34331 -10.28236 -10.08060 -10.00813 -9.93213 -9.84179 -9.55747 -9.43171 -8.85434 -8.58143 -6.76530 -5.94510 -3.45922 1.13490 1.69837 2.19054 2.44260 3.07452 3.29230 3.34382 3.39103 3.98599 4.06725 4.35803 4.46194 4.49341 4.68817 5.01300 5.08625 5.20178 5.26875 5.28794 5.43845 5.56130 5.66752 5.70906 5.77677 5.86745 5.87915 5.94701 5.98711 6.03888 6.17050 6.23565 6.35332 6.36899 6.46043 6.52507 6.56447 6.61603 6.65048 6.70077 6.87157 6.93516 6.98544 7.15426 7.29882 7.42753 7.53969 7.73234 8.14489 8.37184 8.52579 9.04807 9.68714 10.23256 11.07236 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.009896 B = 0.003190 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.819886 B = 8776.008526 C =10686.806884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.010 3.990 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.250 4.250 8 H 0.064 0.936 9 N -0.574 5.574 10 C 0.136 3.864 11 C 0.097 3.903 12 N -0.709 5.709 13 C 0.493 3.507 14 O -0.518 6.518 15 C 0.093 3.907 16 N -0.297 5.297 17 C 0.158 3.842 18 N -0.310 5.310 19 N -0.083 5.083 20 N -0.061 5.061 21 C 0.183 3.817 22 C -0.120 4.120 23 C -0.114 4.114 24 C -0.116 4.116 25 C -0.116 4.116 26 C -0.109 4.109 27 C -0.130 4.130 28 H 0.255 0.745 29 H 0.107 0.893 30 H 0.027 0.973 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.401 0.599 34 H 0.143 0.857 35 H 0.134 0.866 36 H 0.235 0.765 37 H 0.050 0.950 38 H 0.074 0.926 39 H 0.049 0.951 40 H 0.048 0.952 41 H 0.051 0.949 42 H 0.048 0.952 43 H 0.057 0.943 44 H 0.052 0.948 45 H 0.065 0.935 46 H 0.052 0.948 47 H 0.048 0.952 48 H 0.056 0.944 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.161 -5.391 5.027 9.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.189 4.189 3 Si 0.723 3.277 4 H -0.207 1.207 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.380 4.380 8 H 0.082 0.918 9 N -0.293 5.293 10 C 0.008 3.992 11 C -0.027 4.027 12 N -0.361 5.361 13 C 0.275 3.725 14 O -0.393 6.393 15 C -0.033 4.033 16 N -0.099 5.099 17 C -0.141 4.141 18 N -0.157 5.157 19 N -0.077 5.077 20 N -0.047 5.047 21 C 0.076 3.924 22 C -0.159 4.159 23 C -0.152 4.152 24 C -0.154 4.154 25 C -0.154 4.154 26 C -0.147 4.147 27 C -0.170 4.170 28 H 0.065 0.935 29 H 0.125 0.875 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.235 0.765 34 H 0.160 0.840 35 H 0.152 0.848 36 H 0.251 0.749 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.084 0.916 46 H 0.071 0.929 47 H 0.067 0.933 48 H 0.075 0.925 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.606 -6.465 5.641 9.739 hybrid contribution -0.604 1.876 -0.651 2.076 sum -5.210 -4.589 4.990 8.550 Atomic orbital electron populations 1.69959 1.05391 1.25771 1.52144 1.25028 0.94994 0.98527 1.00354 0.86512 0.79319 0.83457 0.78420 1.20699 1.21661 1.21000 1.18990 0.94832 0.85596 1.38543 0.91831 1.43795 1.49082 1.02295 1.34116 1.21125 0.90862 1.03702 0.83524 1.22584 0.92303 1.01121 0.86741 1.46025 1.13638 1.70634 1.05806 1.20100 0.89153 0.79124 0.84152 1.90845 1.18028 1.47021 1.83379 1.22101 0.95215 1.06953 0.79046 1.48165 1.34264 1.14113 1.13346 1.27719 1.01971 1.01058 0.83346 1.74968 1.11723 1.03289 1.25740 1.78658 1.17606 1.11385 1.00047 1.79022 1.06093 1.08417 1.11208 1.20083 0.92551 0.87724 0.92071 1.21781 1.01588 0.95156 0.97421 1.21919 0.98849 0.95161 0.99283 1.21332 0.95496 0.97605 1.00934 1.21327 0.95965 1.00215 0.97844 1.20453 1.00188 0.97701 0.96389 1.20921 0.99374 0.94851 1.01804 0.93547 0.87518 0.95429 0.92897 0.91552 0.76538 0.83971 0.84784 0.74915 0.93179 0.90703 0.93218 0.93299 0.93046 0.93345 0.92408 0.92962 0.91649 0.92898 0.93335 0.92491 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.62 11.32 55.49 0.63 -21.99 16 2 C 0.01 0.26 4.92 -17.43 -0.09 0.17 16 3 Si 0.89 20.21 29.61 -169.99 -5.03 15.18 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.25 -6.09 8.49 -15.06 -0.13 -6.21 16 8 H 0.06 1.59 7.35 -52.49 -0.39 1.21 16 9 N -0.57 -12.33 2.28 -166.36 -0.38 -12.71 16 10 C 0.14 2.64 5.31 -4.04 -0.02 2.62 16 11 C 0.10 1.71 6.00 -4.05 -0.02 1.69 16 12 N -0.71 -9.15 5.56 -60.30 -0.33 -9.48 16 13 C 0.49 6.48 7.85 -10.98 -0.09 6.40 16 14 O -0.52 -9.73 15.71 5.55 0.09 -9.65 16 15 C 0.09 0.69 6.96 -5.19 -0.04 0.65 16 16 N -0.30 -3.32 3.19 -63.74 -0.20 -3.52 16 17 C 0.16 1.51 12.79 -90.39 -1.16 0.35 16 18 N -0.31 -4.30 12.36 29.59 0.37 -3.93 16 19 N -0.08 -1.35 13.43 60.35 0.81 -0.54 16 20 N -0.06 -0.94 12.31 60.35 0.74 -0.20 16 21 C 0.18 3.39 2.31 -68.55 -0.16 3.24 16 22 C -0.12 -2.19 4.46 -27.44 -0.12 -2.31 16 23 C -0.11 -1.68 5.86 -25.62 -0.15 -1.83 16 24 C -0.12 -1.53 5.31 -27.44 -0.15 -1.67 16 25 C -0.12 -1.54 5.60 -27.34 -0.15 -1.69 16 26 C -0.11 -1.59 5.26 -29.60 -0.16 -1.75 16 27 C -0.13 -2.27 4.21 -29.60 -0.12 -2.40 16 28 H 0.25 6.35 8.31 -40.82 -0.34 6.01 16 29 H 0.11 2.34 5.32 -51.93 -0.28 2.07 16 30 H 0.03 0.50 8.02 -51.93 -0.42 0.09 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.40 3.79 8.47 -40.82 -0.35 3.45 16 34 H 0.14 0.38 8.08 -51.93 -0.42 -0.04 16 35 H 0.13 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.23 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.05 0.91 6.72 -51.93 -0.35 0.56 16 38 H 0.07 1.61 7.87 -51.93 -0.41 1.20 16 39 H 0.05 0.92 6.63 -51.93 -0.34 0.58 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.77 6.64 -51.93 -0.34 0.43 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.91 6.99 -51.93 -0.36 0.55 16 46 H 0.05 0.76 7.47 -51.93 -0.39 0.37 16 47 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.06 1.08 8.12 -51.93 -0.42 0.66 16 49 H 0.05 1.01 7.16 -51.93 -0.37 0.64 16 LS Contribution 388.76 15.07 5.86 5.86 Total: -1.00 -33.30 388.76 -7.78 -41.08 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -7.77 Total: 2.65 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -2.55 Total: -2.75 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: 1.63 Total: -52.37 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.03 Total: 15.18 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.30 -7.78 -41.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699684998.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.058 kcal (2) G-P(sol) polarization free energy of solvation -33.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds