Wall clock time and date at job start Tue Mar 31 2020 19:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86790 * 120.00239 * 2 1 4 4 H 1.48502 * 109.47298 * 239.99859 * 3 2 1 5 5 H 1.48505 * 109.47334 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47081 * 119.99748 * 3 2 1 7 7 C 1.38816 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99773 * 157.54796 * 7 2 1 9 9 N 1.36935 * 120.00022 * 337.55027 * 7 2 1 10 10 C 1.46508 * 119.99864 * 326.30485 * 9 7 2 11 11 C 1.52993 * 109.47221 * 265.52618 * 10 9 7 12 12 N 1.46499 * 109.47009 * 180.02562 * 11 10 9 13 13 C 1.34780 * 120.00057 * 180.02562 * 12 11 10 14 14 O 1.21287 * 119.99706 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00162 * 179.97438 * 13 12 11 16 16 N 1.46499 * 109.47007 * 180.02562 * 15 13 12 17 17 C 1.34594 * 126.43766 * 125.00865 * 16 15 13 18 18 N 1.31077 * 106.68093 * 179.97438 * 17 16 15 19 19 N 1.28842 * 107.98685 * 359.97438 * 18 17 16 20 20 N 1.28733 * 109.40018 * 359.73260 * 19 18 17 21 21 C 1.46505 * 120.00085 * 146.30952 * 9 7 2 22 22 C 1.50468 * 109.62602 * 300.95759 * 21 9 7 23 23 C 1.54068 * 112.50293 * 213.85413 * 22 21 9 24 24 C 1.54059 * 112.81757 * 318.29153 * 23 22 21 25 25 C 1.50476 * 112.49631 * 318.27681 * 24 23 22 26 26 C 1.54241 * 108.50939 * 94.15822 * 25 24 23 27 27 C 1.45542 * 112.40838 * 279.99894 * 26 25 24 28 28 H 0.97000 * 119.99977 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.46893 * 25.53334 * 10 9 7 30 30 H 1.09006 * 109.46784 * 145.53093 * 10 9 7 31 31 H 1.09003 * 109.47701 * 300.00019 * 11 10 9 32 32 H 1.09000 * 109.47074 * 60.00143 * 11 10 9 33 33 H 0.97002 * 120.00040 * 0.02562 * 12 11 10 34 34 H 1.08994 * 109.47521 * 300.00439 * 15 13 12 35 35 H 1.09006 * 109.46724 * 60.00528 * 15 13 12 36 36 H 1.08002 * 126.66333 * 359.95785 * 17 16 15 37 37 H 1.09002 * 109.62401 * 180.38142 * 21 9 7 38 38 H 1.09006 * 108.87891 * 334.64170 * 22 21 9 39 39 H 1.09001 * 108.87307 * 93.17572 * 22 21 9 40 40 H 1.08994 * 108.81487 * 197.42339 * 23 22 21 41 41 H 1.09002 * 108.81050 * 79.14901 * 23 22 21 42 42 H 1.09003 * 108.87587 * 197.50186 * 24 23 22 43 43 H 1.08997 * 108.88123 * 79.05509 * 24 23 22 44 44 H 1.08994 * 109.63366 * 213.86670 * 25 24 23 45 45 H 1.09001 * 109.62846 * 334.25864 * 25 24 23 46 46 H 1.08996 * 108.89878 * 40.75559 * 26 25 24 47 47 H 1.09004 * 108.89058 * 159.25228 * 26 25 24 48 48 H 1.09005 * 108.89311 * 182.69853 * 27 26 25 49 49 H 1.08998 * 108.90052 * 301.27989 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0288 -1.2378 -0.3566 9 7 1.4033 -2.3429 0.4539 10 6 0.4319 -2.2705 1.5482 11 6 1.1397 -2.5419 2.8772 12 7 0.1681 -2.4701 3.9714 13 6 0.5677 -2.6764 5.2420 14 8 1.7316 -2.9211 5.4795 15 6 -0.4315 -2.6019 6.3676 16 7 0.2464 -2.8607 7.6402 17 6 0.2423 -2.0636 8.7248 18 7 0.9657 -2.6658 9.6370 19 7 1.3914 -3.7751 9.1388 20 7 0.9537 -3.8989 7.9345 21 6 1.7255 -3.6358 -0.1553 22 6 1.4061 -3.5955 -1.6251 23 6 0.9113 -4.9536 -2.1585 24 6 1.7120 -6.1438 -1.5966 25 6 3.1909 -5.8705 -1.5466 26 6 3.5435 -5.3395 -0.1420 27 6 3.2310 -3.9263 0.0115 28 1 -0.4850 0.8400 -0.0004 29 1 -0.0160 -1.2771 1.5713 30 1 -0.3471 -3.0168 1.3925 31 1 1.5876 -3.5354 2.8542 32 1 1.9187 -1.7957 3.0330 33 1 -0.7627 -2.2740 3.7814 34 1 -0.8798 -1.6087 6.3905 35 1 -1.2104 -3.3486 6.2120 36 1 -0.2594 -1.1124 8.8240 37 1 1.1452 -4.4225 0.3270 38 1 0.6336 -2.8461 -1.7978 39 1 2.3036 -3.3088 -2.1732 40 1 0.9943 -4.9558 -3.2453 41 1 -0.1375 -5.0764 -1.8880 42 1 1.5356 -7.0161 -2.2260 43 1 1.3594 -6.3616 -0.5885 44 1 3.7403 -6.7921 -1.7382 45 1 3.4513 -5.1258 -2.2987 46 1 2.9837 -5.9075 0.6010 47 1 4.6093 -5.4863 0.0335 48 1 3.5457 -3.6009 1.0031 49 1 3.7836 -3.3591 -0.7375 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699684998.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:35 Heat of formation + Delta-G solvation = 74.740004 kcal Electronic energy + Delta-G solvation = -29765.991123 eV Core-core repulsion = 25765.478293 eV Total energy + Delta-G solvation = -4000.512830 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -45.16026 -40.85746 -40.01847 -37.36881 -36.42789 -35.61363 -33.52603 -33.45772 -33.19387 -31.86597 -30.40785 -28.75112 -26.39873 -25.30148 -25.01287 -24.78086 -24.04853 -22.45509 -21.74375 -21.37175 -20.11356 -18.99130 -18.73127 -18.05988 -17.48095 -17.07494 -17.04877 -16.65333 -16.50927 -16.14186 -15.66125 -15.49064 -15.34417 -14.95222 -14.85653 -14.61520 -14.19597 -14.06172 -13.85310 -13.50643 -13.37908 -13.14595 -13.11268 -12.89530 -12.83169 -12.58660 -12.29123 -12.21305 -12.15890 -12.12439 -11.94109 -11.56362 -11.52839 -11.47019 -11.41545 -11.20042 -11.05449 -10.96841 -10.82269 -10.48307 -10.12190 -8.56411 -7.82970 -5.36076 0.27733 0.98847 1.25464 1.43897 1.44289 1.48116 1.53520 2.08095 2.52575 3.22851 3.30427 3.48948 3.56594 3.73800 3.85588 4.00724 4.02646 4.04210 4.20747 4.37384 4.38881 4.40796 4.42422 4.47428 4.52880 4.61601 4.72005 4.75994 4.78818 4.81963 5.00300 5.11162 5.20139 5.20648 5.22211 5.26208 5.35932 5.39329 5.45483 5.47657 5.53687 5.65025 5.67547 5.72290 5.73055 5.86611 6.45331 6.52275 7.13853 7.21235 7.57971 7.90662 8.39425 9.14950 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.009896 B = 0.003190 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.819886 B = 8776.008526 C =10686.806884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.025 4.025 3 Si 0.939 3.061 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.251 4.251 8 H 0.048 0.952 9 N -0.589 5.589 10 C 0.143 3.857 11 C 0.121 3.879 12 N -0.699 5.699 13 C 0.490 3.510 14 O -0.581 6.581 15 C 0.099 3.901 16 N -0.298 5.298 17 C 0.184 3.816 18 N -0.347 5.347 19 N -0.120 5.120 20 N -0.098 5.098 21 C 0.181 3.819 22 C -0.110 4.110 23 C -0.108 4.108 24 C -0.113 4.113 25 C -0.112 4.112 26 C -0.109 4.109 27 C -0.117 4.117 28 H 0.253 0.747 29 H 0.088 0.912 30 H 0.041 0.959 31 H 0.039 0.961 32 H 0.028 0.972 33 H 0.421 0.579 34 H 0.204 0.796 35 H 0.174 0.826 36 H 0.296 0.704 37 H 0.059 0.941 38 H 0.036 0.964 39 H 0.037 0.963 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.077 0.923 45 H 0.055 0.945 46 H 0.058 0.942 47 H 0.058 0.942 48 H 0.033 0.967 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.107 -5.854 5.219 11.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.223 4.223 3 Si 0.768 3.232 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.217 1.217 7 C -0.382 4.382 8 H 0.066 0.934 9 N -0.309 5.309 10 C 0.016 3.984 11 C -0.005 4.005 12 N -0.352 5.352 13 C 0.275 3.725 14 O -0.460 6.460 15 C -0.024 4.024 16 N -0.101 5.101 17 C -0.114 4.114 18 N -0.195 5.195 19 N -0.114 5.114 20 N -0.085 5.085 21 C 0.075 3.925 22 C -0.149 4.149 23 C -0.146 4.146 24 C -0.150 4.150 25 C -0.149 4.149 26 C -0.147 4.147 27 C -0.157 4.157 28 H 0.062 0.938 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.259 0.741 34 H 0.221 0.779 35 H 0.191 0.809 36 H 0.311 0.689 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.095 0.905 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.052 0.948 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.601 -6.936 5.829 11.209 hybrid contribution -0.016 2.067 -0.737 2.194 sum -6.617 -4.869 5.092 9.665 Atomic orbital electron populations 1.70033 1.05859 1.25861 1.53294 1.25430 0.95595 1.00189 1.01041 0.85803 0.78277 0.81349 0.77730 1.20960 1.21383 1.21731 1.19001 0.94316 0.86925 1.37958 0.93436 1.44002 1.49189 1.02553 1.35130 1.21006 0.90736 1.02887 0.83803 1.21911 0.92061 0.98970 0.87606 1.45743 1.13794 1.70482 1.05133 1.21058 0.89413 0.77016 0.84992 1.90835 1.21225 1.49594 1.84327 1.22538 0.93081 1.11765 0.74997 1.48421 1.33665 1.13319 1.14665 1.28805 0.99521 1.01531 0.81550 1.74865 1.13489 1.03455 1.27642 1.78620 1.19036 1.12986 1.00786 1.78938 1.07642 1.10685 1.11235 1.20200 0.93303 0.86659 0.92308 1.21624 0.99716 0.96509 0.97020 1.21857 0.99194 0.93658 0.99918 1.21313 0.94898 0.97443 1.01360 1.21307 0.96465 1.00969 0.96202 1.20426 1.00949 0.95436 0.97859 1.20793 0.98225 0.96850 0.99790 0.93790 0.89473 0.94042 0.94225 0.95302 0.74119 0.77903 0.80876 0.68897 0.92273 0.94553 0.94399 0.92179 0.92701 0.90785 0.92426 0.90458 0.92602 0.92318 0.92378 0.94835 0.94334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.68 11.32 21.65 0.25 -46.43 16 2 C -0.02 -1.27 4.92 84.86 0.42 -0.85 16 3 Si 0.94 42.29 29.61 68.60 2.03 44.33 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 5 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 7 C -0.25 -12.68 8.49 84.03 0.71 -11.97 16 8 H 0.05 2.51 7.35 -2.91 -0.02 2.49 16 9 N -0.59 -26.07 2.28 -680.26 -1.55 -27.62 16 10 C 0.14 5.62 5.31 86.38 0.46 6.08 16 11 C 0.12 4.35 6.00 86.38 0.52 4.87 16 12 N -0.70 -17.05 5.56 -463.06 -2.57 -19.62 16 13 C 0.49 12.07 7.85 87.66 0.69 12.76 16 14 O -0.58 -22.06 15.71 -3.05 -0.05 -22.11 16 15 C 0.10 1.04 6.96 85.63 0.60 1.64 16 16 N -0.30 -5.85 3.19 -355.56 -1.13 -6.99 16 17 C 0.18 2.89 12.79 180.27 2.31 5.19 16 18 N -0.35 -9.26 12.36 -60.29 -0.75 -10.00 16 19 N -0.12 -3.95 13.43 37.01 0.50 -3.46 16 20 N -0.10 -2.98 12.31 37.02 0.46 -2.53 16 21 C 0.18 6.85 2.31 44.59 0.10 6.96 16 22 C -0.11 -4.03 4.46 30.14 0.13 -3.90 16 23 C -0.11 -3.02 5.86 31.31 0.18 -2.84 16 24 C -0.11 -2.65 5.31 30.14 0.16 -2.49 16 25 C -0.11 -2.71 5.60 30.20 0.17 -2.54 16 26 C -0.11 -3.06 5.26 28.74 0.15 -2.91 16 27 C -0.12 -4.19 4.21 28.73 0.12 -4.07 16 28 H 0.25 12.68 8.31 -92.71 -0.77 11.91 16 29 H 0.09 3.86 5.32 -2.39 -0.01 3.85 16 30 H 0.04 1.50 8.02 -2.38 -0.02 1.48 16 31 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.42 6.84 8.47 -92.71 -0.79 6.06 16 34 H 0.20 -0.30 8.08 -2.39 -0.02 -0.32 16 35 H 0.17 0.59 8.14 -2.38 -0.02 0.57 16 36 H 0.30 0.27 8.06 -2.91 -0.02 0.25 16 37 H 0.06 2.12 6.72 -2.39 -0.02 2.10 16 38 H 0.04 1.60 7.87 -2.38 -0.02 1.58 16 39 H 0.04 1.44 6.63 -2.39 -0.02 1.43 16 40 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.06 1.38 6.64 -2.39 -0.02 1.36 16 44 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.06 1.47 6.99 -2.39 -0.02 1.46 16 46 H 0.06 1.60 7.47 -2.39 -0.02 1.58 16 47 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 48 H 0.03 1.33 8.12 -2.38 -0.02 1.31 16 49 H 0.04 1.47 7.16 -2.39 -0.02 1.45 16 Total: -1.00 -80.59 388.76 4.08 -76.51 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.18 Total: 11.99 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 6.72 Total: 5.93 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -4.80 Total: -116.65 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.05 Total: -22.11 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.33 kcal Total: -80.59 4.08 -76.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699684998.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.253 kcal (2) G-P(sol) polarization free energy of solvation -80.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds