Wall clock time and date at job start Tue Mar 31 2020 20:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34781 * 119.99567 * 2 1 4 4 O 1.21533 * 119.99536 * 184.14739 * 3 2 1 5 5 C 1.48006 * 120.00216 * 4.14806 * 3 2 1 6 6 N 1.34188 * 126.69377 * 4.71533 * 5 3 2 7 7 N 1.28991 * 107.24821 * 180.02562 * 6 5 3 8 8 N 1.28721 * 108.98562 * 359.97438 * 7 6 5 9 9 C 1.46500 * 125.32155 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.46700 * 359.97203 * 9 8 7 11 11 C 1.52993 * 109.47684 * 119.96970 * 9 8 7 12 12 C 1.52997 * 109.47286 * 239.97607 * 9 8 7 13 13 N 1.28867 * 109.36059 * 359.72557 * 8 7 6 14 14 C 1.46494 * 120.00287 * 180.02562 * 2 1 3 15 15 H 1.08993 * 109.47195 * 180.02562 * 14 2 1 16 16 C 1.53001 * 109.46905 * 299.99943 * 14 2 1 17 17 N 1.46503 * 109.47399 * 305.00271 * 16 14 2 18 18 C 1.36931 * 120.00035 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00532 * 359.97438 * 18 17 16 20 20 C 1.38814 * 119.99966 * 179.97438 * 18 17 16 21 21 N 1.31622 * 119.99712 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00242 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47239 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47038 * 120.00116 * 22 20 18 25 25 H 1.48498 * 109.47076 * 239.99854 * 22 20 18 26 26 C 1.53004 * 109.47333 * 59.99804 * 14 2 1 27 27 C 1.52998 * 117.49833 * 128.74850 * 26 14 2 28 28 C 1.52998 * 117.49648 * 60.08755 * 26 14 2 29 29 H 1.09004 * 109.46818 * 84.23008 * 1 2 3 30 30 H 1.08997 * 109.47331 * 324.22937 * 1 2 3 31 31 H 1.08994 * 109.46886 * 204.22610 * 1 2 3 32 32 H 1.08999 * 109.47435 * 60.00244 * 10 9 8 33 33 H 1.09000 * 109.46834 * 180.02562 * 10 9 8 34 34 H 1.08994 * 109.47526 * 299.99917 * 10 9 8 35 35 H 1.09005 * 109.47157 * 60.00236 * 11 9 8 36 36 H 1.09000 * 109.47558 * 180.02562 * 11 9 8 37 37 H 1.09005 * 109.47380 * 300.00773 * 11 9 8 38 38 H 1.09009 * 109.47072 * 59.99420 * 12 9 8 39 39 H 1.09001 * 109.47679 * 179.97438 * 12 9 8 40 40 H 1.08997 * 109.46870 * 299.99882 * 12 9 8 41 41 H 1.09001 * 109.47331 * 65.00101 * 16 14 2 42 42 H 1.09000 * 109.47174 * 184.99890 * 16 14 2 43 43 H 0.97004 * 119.99428 * 359.97438 * 17 16 14 44 44 H 0.97005 * 119.99994 * 180.02562 * 21 20 18 45 45 H 1.08996 * 115.54942 * 274.41801 * 26 14 2 46 46 H 1.09005 * 117.49733 * 0.02562 * 27 26 14 47 47 H 1.08994 * 117.49885 * 145.02126 * 27 26 14 48 48 H 1.08997 * 117.50124 * 214.97761 * 28 26 14 49 49 H 1.09003 * 117.50076 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3518 1.1687 -0.0761 5 6 1.4017 2.4474 0.0927 6 7 0.0805 2.6007 0.2699 7 7 -0.1575 3.8683 0.2949 8 7 0.9505 4.5054 0.1425 9 6 1.0925 5.9633 0.1159 10 6 -0.2810 6.6128 0.2967 11 6 2.0193 6.4063 1.2497 12 6 1.6873 6.3934 -1.2265 13 7 1.9163 3.6606 0.0233 14 6 2.1976 -1.2686 -0.0006 15 1 3.2692 -1.0694 0.0000 16 6 1.8280 -2.0715 1.2483 17 7 2.0707 -1.2573 2.4419 18 6 1.8113 -1.7700 3.6848 19 1 1.4274 -2.7744 3.7853 20 6 2.0417 -0.9987 4.8157 21 7 2.5101 0.2252 4.6933 22 14 1.6872 -1.6979 6.5113 23 1 1.1720 -3.0842 6.3773 24 1 2.9373 -1.7101 7.3129 25 1 0.6712 -0.8552 7.1916 26 6 1.8280 -2.0705 -1.2502 27 6 2.9742 -2.6049 -2.1112 28 6 2.1229 -1.4348 -2.6102 29 1 -0.3633 0.1033 -1.0225 30 1 -0.3634 0.8338 0.6007 31 1 -0.3633 -0.9371 0.4217 32 1 -0.7048 6.3064 1.2531 33 1 -0.1754 7.6975 0.2765 34 1 -0.9413 6.2972 -0.5110 35 1 2.9978 5.9437 1.1210 36 1 2.1245 7.4911 1.2302 37 1 1.5956 6.0999 2.2062 38 1 1.0269 6.0778 -2.0343 39 1 1.7925 7.4782 -1.2465 40 1 2.6657 5.9307 -1.3553 41 1 0.7743 -2.3469 1.2046 42 1 2.4378 -2.9738 1.2939 43 1 2.4158 -0.3552 2.3516 44 1 2.6715 0.7641 5.4835 45 1 0.9325 -2.6861 -1.1659 46 1 3.9917 -2.3857 -1.7872 47 1 2.8327 -3.5720 -2.5937 48 1 1.4216 -1.6325 -3.4209 49 1 2.5798 -0.4451 -2.6148 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700720785.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:48 Heat of formation + Delta-G solvation = 149.014678 kcal Electronic energy + Delta-G solvation = -30581.699748 eV Core-core repulsion = 26584.407710 eV Total energy + Delta-G solvation = -3997.292038 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.27814 -39.81367 -37.84400 -37.31004 -35.19344 -34.06220 -33.31303 -32.37328 -31.12130 -28.45861 -27.93771 -27.88013 -26.53046 -25.18455 -24.34685 -23.79585 -22.25883 -21.47276 -20.84185 -20.65068 -19.10189 -17.41672 -17.30541 -17.09370 -16.61152 -16.25848 -15.33733 -14.92297 -14.67692 -14.53410 -14.34931 -14.15202 -13.95181 -13.58696 -13.21530 -13.13050 -12.92244 -12.82838 -12.73180 -12.59324 -12.25243 -12.18929 -11.97651 -11.83797 -11.80673 -11.50763 -11.41469 -11.31677 -10.92125 -10.86958 -10.82460 -10.69873 -10.51864 -10.28698 -10.21347 -10.16161 -9.93032 -9.72377 -9.63015 -8.82911 -8.24752 -6.85396 -5.68572 -2.97955 1.19302 1.69351 1.72869 2.94311 3.43438 3.47207 3.52127 3.54851 3.85771 4.01261 4.18092 4.22023 4.28955 4.58749 4.66615 4.80664 5.03366 5.05497 5.07446 5.13104 5.14582 5.22813 5.28942 5.31409 5.34538 5.46827 5.56685 5.62134 5.66443 5.70405 5.74894 5.78351 5.80398 5.85795 5.91364 6.01796 6.02995 6.19247 6.24593 6.26475 6.40200 6.52746 6.57808 6.75238 6.98790 7.61254 7.75612 8.23891 8.46786 8.48361 9.59982 10.18100 10.52930 11.53739 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.008557 B = 0.004353 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3271.274655 B = 6430.801168 C = 8867.233327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.568 5.568 3 C 0.617 3.383 4 O -0.514 6.514 5 C 0.143 3.857 6 N -0.251 5.251 7 N -0.064 5.064 8 N -0.127 5.127 9 C 0.177 3.823 10 C -0.152 4.152 11 C -0.162 4.162 12 C -0.159 4.159 13 N -0.248 5.248 14 C 0.163 3.837 15 H 0.103 0.897 16 C 0.147 3.853 17 N -0.728 5.728 18 C -0.237 4.237 19 H 0.071 0.929 20 C -0.013 4.013 21 N -0.930 5.930 22 Si 0.905 3.095 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.293 1.293 26 C -0.158 4.158 27 C -0.169 4.169 28 C -0.173 4.173 29 H 0.049 0.951 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.025 0.975 42 H 0.034 0.966 43 H 0.385 0.615 44 H 0.253 0.747 45 H 0.109 0.891 46 H 0.096 0.904 47 H 0.094 0.906 48 H 0.091 0.909 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.103 11.123 -16.089 20.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.300 5.300 3 C 0.399 3.601 4 O -0.386 6.386 5 C -0.140 4.140 6 N -0.125 5.125 7 N -0.056 5.056 8 N -0.042 5.042 9 C 0.097 3.903 10 C -0.210 4.210 11 C -0.220 4.220 12 C -0.217 4.217 13 N -0.100 5.100 14 C 0.061 3.939 15 H 0.121 0.879 16 C 0.019 3.981 17 N -0.373 5.373 18 C -0.369 4.369 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.578 5.578 22 Si 0.737 3.263 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.220 1.220 26 C -0.177 4.177 27 C -0.207 4.207 28 C -0.210 4.210 29 H 0.067 0.933 30 H 0.122 0.878 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.042 0.958 42 H 0.051 0.949 43 H 0.219 0.781 44 H 0.063 0.937 45 H 0.127 0.873 46 H 0.115 0.885 47 H 0.112 0.888 48 H 0.109 0.891 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.983 11.414 -15.917 20.210 hybrid contribution 0.159 -0.352 1.081 1.148 sum -4.824 11.061 -14.836 19.124 Atomic orbital electron populations 1.22247 0.78328 1.05371 1.01631 1.47331 1.07809 1.04244 1.70583 1.16120 0.85612 0.80619 0.77764 1.90816 1.12300 1.85856 1.49672 1.25259 0.89230 0.94224 1.05337 1.76172 1.13522 1.06068 1.16705 1.78856 1.11684 0.99806 1.15265 1.50636 1.01583 1.10024 1.41927 1.21449 0.99763 0.69688 0.99430 1.22093 0.93106 1.01097 1.04734 1.22270 1.00036 1.02947 0.96792 1.22243 1.02611 1.03143 0.93717 1.74962 1.17602 0.99009 1.18458 1.21060 0.97710 0.81576 0.93582 0.87896 1.20971 0.97966 0.93533 0.85646 1.42297 1.78825 1.15747 1.00401 1.19242 1.36026 0.98016 0.83568 0.91101 1.24744 1.02130 0.96284 0.97761 1.69709 1.51166 1.08821 1.28130 0.86137 0.77346 0.77959 0.84875 1.20531 1.21950 1.21999 1.22571 1.00665 1.03008 0.91481 1.22977 0.96324 0.98022 1.03347 1.22835 1.03446 0.97929 0.96788 0.93271 0.87805 0.90497 0.90396 0.89281 0.90603 0.90104 0.89171 0.91042 0.91422 0.89138 0.90237 0.95769 0.94865 0.78116 0.93723 0.87307 0.88521 0.88758 0.89091 0.89036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.09 9.17 59.85 0.55 1.64 16 2 N -0.57 -10.39 2.13 -174.98 -0.37 -10.76 16 3 C 0.62 12.64 7.39 -12.25 -0.09 12.54 16 4 O -0.51 -11.80 16.43 5.34 0.09 -11.71 16 5 C 0.14 2.75 7.84 -156.25 -1.23 1.53 16 6 N -0.25 -4.47 9.00 32.10 0.29 -4.18 16 7 N -0.06 -1.01 12.21 60.35 0.74 -0.28 16 8 N -0.13 -1.84 3.72 0.52 0.00 -1.84 16 9 C 0.18 1.69 1.30 -131.82 -0.17 1.51 16 10 C -0.15 -1.08 7.90 37.16 0.29 -0.79 16 11 C -0.16 -1.45 8.65 37.15 0.32 -1.13 16 12 C -0.16 -1.17 8.66 37.16 0.32 -0.85 16 13 N -0.25 -4.37 11.85 32.11 0.38 -3.99 16 14 C 0.16 2.92 2.37 -67.93 -0.16 2.75 16 15 H 0.10 2.06 6.66 -51.93 -0.35 1.71 16 16 C 0.15 3.04 5.50 -4.04 -0.02 3.01 16 17 N -0.73 -19.28 5.43 -59.91 -0.33 -19.60 16 18 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 19 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -29.50 13.06 55.49 0.72 -28.77 16 22 Si 0.91 23.09 29.55 -169.99 -5.02 18.07 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 25 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 26 C -0.16 -2.17 4.83 -90.62 -0.44 -2.61 16 27 C -0.17 -2.06 10.18 -26.69 -0.27 -2.33 16 28 C -0.17 -2.17 10.13 -26.69 -0.27 -2.44 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.10 1.85 4.99 -51.93 -0.26 1.59 16 31 H 0.08 1.21 6.54 -51.93 -0.34 0.87 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 39 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.02 0.49 6.87 -51.93 -0.36 0.13 16 42 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.38 11.14 7.07 -40.82 -0.29 10.85 16 44 H 0.25 7.75 8.31 -40.82 -0.34 7.41 16 45 H 0.11 1.37 8.11 -51.93 -0.42 0.95 16 46 H 0.10 1.24 8.05 -51.93 -0.42 0.82 16 47 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 402.55 15.07 6.07 6.07 Total: -1.00 -35.75 402.55 -6.74 -42.49 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -7.89 Total: 9.14 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -1.41 Total: 5.38 kcal Atomic # 7 Polarization: -70.86 SS G_CDS: 1.44 Total: -69.42 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.07 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.75 -6.74 -42.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700720785.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.503 kcal (2) G-P(sol) polarization free energy of solvation -35.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds