Wall clock time and date at job start Tue Mar 31 2020 20:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34781 * 119.99567 * 2 1 4 4 O 1.21533 * 119.99536 * 184.14739 * 3 2 1 5 5 C 1.48006 * 120.00216 * 4.14806 * 3 2 1 6 6 N 1.34188 * 126.69377 * 4.71533 * 5 3 2 7 7 N 1.28991 * 107.24821 * 180.02562 * 6 5 3 8 8 N 1.28721 * 108.98562 * 359.97438 * 7 6 5 9 9 C 1.46500 * 125.32155 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.46700 * 359.97203 * 9 8 7 11 11 C 1.52993 * 109.47684 * 119.96970 * 9 8 7 12 12 C 1.52997 * 109.47286 * 239.97607 * 9 8 7 13 13 N 1.28867 * 109.36059 * 359.72557 * 8 7 6 14 14 C 1.46494 * 120.00287 * 180.02562 * 2 1 3 15 15 H 1.08993 * 109.47195 * 180.02562 * 14 2 1 16 16 C 1.53001 * 109.46905 * 299.99943 * 14 2 1 17 17 N 1.46503 * 109.47399 * 305.00271 * 16 14 2 18 18 C 1.36931 * 120.00035 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00532 * 359.97438 * 18 17 16 20 20 C 1.38814 * 119.99966 * 179.97438 * 18 17 16 21 21 N 1.31622 * 119.99712 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00242 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47239 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47038 * 120.00116 * 22 20 18 25 25 H 1.48498 * 109.47076 * 239.99854 * 22 20 18 26 26 C 1.53004 * 109.47333 * 59.99804 * 14 2 1 27 27 C 1.52998 * 117.49833 * 128.74850 * 26 14 2 28 28 C 1.52998 * 117.49648 * 60.08755 * 26 14 2 29 29 H 1.09004 * 109.46818 * 84.23008 * 1 2 3 30 30 H 1.08997 * 109.47331 * 324.22937 * 1 2 3 31 31 H 1.08994 * 109.46886 * 204.22610 * 1 2 3 32 32 H 1.08999 * 109.47435 * 60.00244 * 10 9 8 33 33 H 1.09000 * 109.46834 * 180.02562 * 10 9 8 34 34 H 1.08994 * 109.47526 * 299.99917 * 10 9 8 35 35 H 1.09005 * 109.47157 * 60.00236 * 11 9 8 36 36 H 1.09000 * 109.47558 * 180.02562 * 11 9 8 37 37 H 1.09005 * 109.47380 * 300.00773 * 11 9 8 38 38 H 1.09009 * 109.47072 * 59.99420 * 12 9 8 39 39 H 1.09001 * 109.47679 * 179.97438 * 12 9 8 40 40 H 1.08997 * 109.46870 * 299.99882 * 12 9 8 41 41 H 1.09001 * 109.47331 * 65.00101 * 16 14 2 42 42 H 1.09000 * 109.47174 * 184.99890 * 16 14 2 43 43 H 0.97004 * 119.99428 * 359.97438 * 17 16 14 44 44 H 0.97005 * 119.99994 * 180.02562 * 21 20 18 45 45 H 1.08996 * 115.54942 * 274.41801 * 26 14 2 46 46 H 1.09005 * 117.49733 * 0.02562 * 27 26 14 47 47 H 1.08994 * 117.49885 * 145.02126 * 27 26 14 48 48 H 1.08997 * 117.50124 * 214.97761 * 28 26 14 49 49 H 1.09003 * 117.50076 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3518 1.1687 -0.0761 5 6 1.4017 2.4474 0.0927 6 7 0.0805 2.6007 0.2699 7 7 -0.1575 3.8683 0.2949 8 7 0.9505 4.5054 0.1425 9 6 1.0925 5.9633 0.1159 10 6 -0.2810 6.6128 0.2967 11 6 2.0193 6.4063 1.2497 12 6 1.6873 6.3934 -1.2265 13 7 1.9163 3.6606 0.0233 14 6 2.1976 -1.2686 -0.0006 15 1 3.2692 -1.0694 0.0000 16 6 1.8280 -2.0715 1.2483 17 7 2.0707 -1.2573 2.4419 18 6 1.8113 -1.7700 3.6848 19 1 1.4274 -2.7744 3.7853 20 6 2.0417 -0.9987 4.8157 21 7 2.5101 0.2252 4.6933 22 14 1.6872 -1.6979 6.5113 23 1 1.1720 -3.0842 6.3773 24 1 2.9373 -1.7101 7.3129 25 1 0.6712 -0.8552 7.1916 26 6 1.8280 -2.0705 -1.2502 27 6 2.9742 -2.6049 -2.1112 28 6 2.1229 -1.4348 -2.6102 29 1 -0.3633 0.1033 -1.0225 30 1 -0.3634 0.8338 0.6007 31 1 -0.3633 -0.9371 0.4217 32 1 -0.7048 6.3064 1.2531 33 1 -0.1754 7.6975 0.2765 34 1 -0.9413 6.2972 -0.5110 35 1 2.9978 5.9437 1.1210 36 1 2.1245 7.4911 1.2302 37 1 1.5956 6.0999 2.2062 38 1 1.0269 6.0778 -2.0343 39 1 1.7925 7.4782 -1.2465 40 1 2.6657 5.9307 -1.3553 41 1 0.7743 -2.3469 1.2046 42 1 2.4378 -2.9738 1.2939 43 1 2.4158 -0.3552 2.3516 44 1 2.6715 0.7641 5.4835 45 1 0.9325 -2.6861 -1.1659 46 1 3.9917 -2.3857 -1.7872 47 1 2.8327 -3.5720 -2.5937 48 1 1.4216 -1.6325 -3.4209 49 1 2.5798 -0.4451 -2.6148 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700720785.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:47 Heat of formation + Delta-G solvation = 125.001831 kcal Electronic energy + Delta-G solvation = -30582.741023 eV Core-core repulsion = 26584.407710 eV Total energy + Delta-G solvation = -3998.333313 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.57039 -41.29512 -38.85599 -38.53142 -36.69384 -35.85811 -34.62788 -33.75225 -33.00743 -30.15712 -28.63738 -28.55227 -27.92324 -26.70683 -25.70984 -25.46915 -23.38522 -23.04664 -22.11850 -21.72089 -20.51314 -19.20876 -18.62664 -18.53284 -17.84141 -17.61921 -16.82845 -16.68682 -15.94994 -15.64002 -15.48588 -15.34035 -15.20600 -15.06040 -14.97835 -14.57745 -14.16293 -14.03566 -13.56056 -13.49109 -13.43270 -13.25090 -13.18483 -13.02383 -12.86847 -12.85346 -12.68614 -12.62159 -12.39674 -12.23244 -12.16515 -12.08796 -12.06349 -11.89518 -11.83157 -11.59079 -11.43636 -11.17702 -11.02310 -10.96995 -9.71413 -9.02198 -7.95001 -5.25204 -0.13487 0.28878 0.67893 1.44212 1.46035 1.56088 1.57053 1.91998 2.53733 2.70090 2.91352 3.04576 3.38856 3.46589 3.47737 3.55971 3.63246 3.89088 3.95599 4.09132 4.13963 4.22767 4.28699 4.39209 4.41232 4.46893 4.50537 4.56196 4.56570 4.59312 4.71175 4.71768 4.74712 4.80007 4.92371 5.00259 5.03704 5.04525 5.09279 5.16680 5.19319 5.25494 5.29106 5.30300 5.46660 5.52419 6.12588 6.24239 6.76789 7.08185 7.30474 8.05602 8.28868 9.28767 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.008557 B = 0.004353 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3271.274655 B = 6430.801168 C = 8867.233327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.562 5.562 3 C 0.608 3.392 4 O -0.555 6.555 5 C 0.120 3.880 6 N -0.260 5.260 7 N -0.063 5.063 8 N -0.109 5.109 9 C 0.157 3.843 10 C -0.148 4.148 11 C -0.160 4.160 12 C -0.153 4.153 13 N -0.262 5.262 14 C 0.170 3.830 15 H 0.073 0.927 16 C 0.146 3.854 17 N -0.744 5.744 18 C -0.237 4.237 19 H 0.084 0.916 20 C -0.080 4.080 21 N -0.974 5.974 22 Si 0.976 3.024 23 H -0.259 1.259 24 H -0.296 1.296 25 H -0.295 1.295 26 C -0.163 4.163 27 C -0.159 4.159 28 C -0.164 4.164 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.130 0.870 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.134 0.866 37 H 0.052 0.948 38 H 0.067 0.933 39 H 0.132 0.868 40 H 0.060 0.940 41 H 0.043 0.957 42 H 0.041 0.959 43 H 0.368 0.632 44 H 0.247 0.753 45 H 0.131 0.869 46 H 0.083 0.917 47 H 0.124 0.876 48 H 0.119 0.881 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.810 11.080 -17.304 21.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.292 5.292 3 C 0.391 3.609 4 O -0.430 6.430 5 C -0.163 4.163 6 N -0.133 5.133 7 N -0.054 5.054 8 N -0.026 5.026 9 C 0.079 3.921 10 C -0.206 4.206 11 C -0.218 4.218 12 C -0.212 4.212 13 N -0.116 5.116 14 C 0.067 3.933 15 H 0.092 0.908 16 C 0.019 3.981 17 N -0.386 5.386 18 C -0.369 4.369 19 H 0.101 0.899 20 C -0.272 4.272 21 N -0.625 5.625 22 Si 0.805 3.195 23 H -0.183 1.183 24 H -0.224 1.224 25 H -0.223 1.223 26 C -0.183 4.183 27 C -0.196 4.196 28 C -0.202 4.202 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.148 0.852 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.153 0.847 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.150 0.850 40 H 0.079 0.921 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.199 0.801 44 H 0.056 0.944 45 H 0.149 0.851 46 H 0.101 0.899 47 H 0.142 0.858 48 H 0.137 0.863 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.745 11.313 -17.166 21.637 hybrid contribution 0.691 -0.244 1.410 1.589 sum -6.054 11.069 -15.756 20.185 Atomic orbital electron populations 1.22327 0.76873 1.04940 1.03195 1.47454 1.08669 1.03835 1.69286 1.16412 0.85393 0.81622 0.77465 1.90770 1.13872 1.86560 1.51846 1.25103 0.89831 0.94264 1.07132 1.76144 1.12925 1.07050 1.17215 1.78757 1.12105 0.99323 1.15260 1.51279 1.00482 1.11371 1.39459 1.22244 1.01802 0.67073 1.00986 1.22169 0.91187 1.03304 1.03894 1.22326 0.98395 1.05576 0.95549 1.22286 1.01232 1.05556 0.92085 1.74913 1.18759 0.99120 1.18808 1.20934 0.96148 0.81604 0.94623 0.90841 1.21173 0.98860 0.93311 0.84734 1.42538 1.78753 1.15586 1.01704 1.19716 1.34316 0.98270 0.84584 0.89855 1.25630 1.02950 0.96700 1.01870 1.69907 1.53398 1.10519 1.28717 0.85026 0.76664 0.78069 0.79728 1.18328 1.22382 1.22276 1.22455 1.02382 1.03501 0.89928 1.23081 0.95143 0.99222 1.02173 1.22842 1.03756 0.96991 0.96568 0.90399 0.89393 0.89880 0.91780 0.85168 0.90619 0.92299 0.84738 0.92880 0.91437 0.85001 0.92089 0.93956 0.94166 0.80078 0.94438 0.85072 0.89856 0.85780 0.86317 0.91416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.20 9.17 127.77 1.17 3.38 16 2 N -0.56 -21.09 2.13 -825.81 -1.75 -22.84 16 3 C 0.61 26.33 7.39 86.83 0.64 26.97 16 4 O -0.55 -27.33 16.43 -3.82 -0.06 -27.39 16 5 C 0.12 4.84 7.84 137.15 1.08 5.91 16 6 N -0.26 -9.56 9.00 -52.37 -0.47 -10.03 16 7 N -0.06 -2.02 12.21 37.02 0.45 -1.57 16 8 N -0.11 -3.21 3.72 -152.27 -0.57 -3.78 16 9 C 0.16 2.83 1.30 3.60 0.00 2.83 16 10 C -0.15 -1.79 7.90 71.98 0.57 -1.22 16 11 C -0.16 -2.74 8.65 71.98 0.62 -2.12 16 12 C -0.15 -2.00 8.66 71.98 0.62 -1.37 16 13 N -0.26 -9.70 11.85 -52.32 -0.62 -10.32 16 14 C 0.17 6.13 2.37 44.99 0.11 6.23 16 15 H 0.07 3.10 6.66 -2.39 -0.02 3.09 16 16 C 0.15 5.99 5.50 86.38 0.48 6.46 16 17 N -0.74 -40.16 5.43 -343.45 -1.87 -42.03 16 18 C -0.24 -13.71 9.99 84.03 0.84 -12.87 16 19 H 0.08 4.52 7.83 -2.91 -0.02 4.49 16 20 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 21 N -0.97 -63.88 13.06 21.65 0.28 -63.60 16 22 Si 0.98 48.03 29.55 68.60 2.03 50.06 16 23 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 24 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 25 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 26 C -0.16 -4.23 4.83 -10.79 -0.05 -4.28 16 27 C -0.16 -3.57 10.18 30.62 0.31 -3.25 16 28 C -0.16 -3.85 10.13 30.62 0.31 -3.54 16 29 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 30 H 0.09 3.18 4.99 -2.39 -0.01 3.17 16 31 H 0.08 2.52 6.54 -2.39 -0.02 2.50 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.04 1.61 6.87 -2.39 -0.02 1.60 16 42 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.37 22.24 7.07 -92.71 -0.66 21.59 16 44 H 0.25 15.71 8.31 -92.70 -0.77 14.94 16 45 H 0.13 2.86 8.11 -2.39 -0.02 2.84 16 46 H 0.08 2.11 8.05 -2.38 -0.02 2.09 16 47 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 48 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 49 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -82.10 402.55 4.89 -77.21 By element: Atomic # 1 Polarization: 35.20 SS G_CDS: 0.30 Total: 35.50 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: 7.17 Total: 18.79 kcal Atomic # 7 Polarization: -149.62 SS G_CDS: -4.54 Total: -154.17 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.06 Total: -27.39 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.03 Total: 50.06 kcal Total: -82.10 4.89 -77.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700720785.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.208 kcal (2) G-P(sol) polarization free energy of solvation -82.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds