Wall clock time and date at job start Tue Mar 31 2020 19:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 113.99889 * 2 1 4 4 C 1.52996 * 109.46840 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47521 * 65.70517 * 4 3 2 6 6 C 1.36930 * 120.00050 * 267.90784 * 5 4 3 7 7 H 1.08004 * 120.00466 * 142.25141 * 6 5 4 8 8 C 1.38813 * 120.00137 * 322.25637 * 6 5 4 9 9 N 1.31614 * 120.00261 * 156.38819 * 8 6 5 10 10 Si 1.86800 * 119.99638 * 336.37986 * 8 6 5 11 11 H 1.48498 * 109.47004 * 95.51340 * 10 8 6 12 12 H 1.48498 * 109.47407 * 215.51113 * 10 8 6 13 13 H 1.48504 * 109.47332 * 335.51535 * 10 8 6 14 14 C 1.46505 * 119.99946 * 87.90190 * 5 4 3 15 15 C 1.53008 * 109.46859 * 270.00450 * 14 5 4 16 16 N 1.46500 * 109.46668 * 180.02562 * 15 14 5 17 17 C 1.34772 * 119.99854 * 180.02562 * 16 15 14 18 18 O 1.21626 * 120.00096 * 359.97438 * 17 16 15 19 19 C 1.47323 * 120.00305 * 179.97438 * 17 16 15 20 20 C 1.36569 * 126.21556 * 179.97438 * 19 17 16 21 21 N 1.34869 * 106.78973 * 179.97438 * 20 19 17 22 22 C 1.36371 * 107.84410 * 0.04796 * 21 20 19 23 23 N 1.29733 * 108.92093 * 359.95985 * 22 21 20 24 24 C 1.51103 * 123.85763 * 179.85177 * 22 21 20 25 25 C 1.53389 * 108.22931 * 344.11117 * 24 22 21 26 26 C 1.53141 * 109.25576 * 48.92183 * 25 24 22 27 27 C 1.46579 * 127.49924 * 180.11175 * 21 20 19 28 28 H 1.09001 * 109.47132 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47131 * 300.00325 * 1 2 3 30 30 H 1.08999 * 109.47235 * 60.00294 * 1 2 3 31 31 H 1.08996 * 109.47203 * 60.00001 * 3 2 1 32 32 H 1.09001 * 109.47149 * 299.99772 * 3 2 1 33 33 H 1.08994 * 109.47664 * 305.70351 * 4 3 2 34 34 H 1.09001 * 109.47031 * 185.70526 * 4 3 2 35 35 H 0.97008 * 119.99881 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.46765 * 150.00635 * 14 5 4 37 37 H 1.08999 * 109.47158 * 30.00265 * 14 5 4 38 38 H 1.08993 * 109.47049 * 60.00151 * 15 14 5 39 39 H 1.08999 * 109.47085 * 299.99860 * 15 14 5 40 40 H 0.96999 * 120.00023 * 359.97438 * 16 15 14 41 41 H 1.08004 * 126.60585 * 359.89381 * 20 19 17 42 42 H 1.08990 * 109.71768 * 224.41766 * 24 22 21 43 43 H 1.08997 * 109.72158 * 103.80659 * 24 22 21 44 44 H 1.08999 * 109.50781 * 168.85473 * 25 24 22 45 45 H 1.08993 * 109.50790 * 288.99090 * 25 24 22 46 46 H 1.08998 * 109.45976 * 50.21818 * 26 25 24 47 47 H 1.09001 * 109.46435 * 170.18901 * 26 25 24 48 48 H 1.08993 * 109.58822 * 42.98542 * 27 21 20 49 49 H 1.09001 * 109.58695 * 282.55883 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9779 0.5794 -1.2580 6 6 4.1403 -0.7775 -1.3452 7 1 3.8663 -1.2970 -2.2516 8 6 4.6572 -1.4853 -0.2688 9 7 4.3986 -2.7694 -0.1403 10 14 5.7200 -0.6153 0.9973 11 1 4.8779 -0.1963 2.1465 12 1 6.7809 -1.5395 1.4722 13 1 6.3459 0.5815 0.3800 14 6 4.2465 1.4257 -2.4232 15 6 2.9658 1.5826 -3.2457 16 7 3.2346 2.4285 -4.4112 17 6 2.2463 2.7067 -5.2842 18 8 1.1313 2.2551 -5.1046 19 6 2.5163 3.5577 -6.4560 20 6 1.6147 3.9186 -7.4162 21 7 2.2750 4.6967 -8.2980 22 6 3.5668 4.8046 -7.8745 23 7 3.7081 4.1260 -6.7779 24 6 4.6278 5.5971 -8.6021 25 6 4.1229 5.8845 -10.0218 26 6 2.6979 6.4407 -9.9481 27 6 1.7375 5.3318 -9.5047 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.8499 0.5583 0.8353 34 1 3.9783 2.1754 0.1028 35 1 4.7595 -3.2639 0.6122 36 1 5.0187 0.9632 -3.0379 37 1 4.5864 2.4062 -2.0896 38 1 2.1937 2.0451 -2.6310 39 1 2.6259 0.6022 -3.5793 40 1 4.1237 2.7889 -4.5542 41 1 0.5737 3.6344 -7.4615 42 1 5.5505 5.0190 -8.6500 43 1 4.8088 6.5361 -8.0791 44 1 4.7749 6.6162 -10.4988 45 1 4.1239 4.9620 -10.6022 46 1 2.6643 7.2592 -9.2290 47 1 2.4001 6.8078 -10.9302 48 1 0.7595 5.7609 -9.2872 49 1 1.6451 4.5898 -10.2979 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701002401.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:37 Heat of formation + Delta-G solvation = 3.608951 kcal Electronic energy + Delta-G solvation = -29134.689564 eV Core-core repulsion = 25098.799509 eV Total energy + Delta-G solvation = -4035.890055 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.59474 -39.03676 -37.38614 -36.85392 -35.76831 -34.12163 -33.66506 -31.54428 -30.49585 -29.46048 -28.90799 -27.68010 -25.57644 -25.10261 -23.87021 -22.78517 -22.61394 -21.63837 -20.56234 -19.70528 -19.40019 -17.69557 -16.77075 -16.46410 -16.36045 -15.97622 -15.44615 -15.21194 -15.01645 -14.76450 -14.59055 -14.45406 -14.29785 -14.13558 -13.94863 -13.86386 -13.50588 -13.20165 -13.11216 -12.49551 -12.37438 -12.18501 -11.77550 -11.74251 -11.66574 -11.60060 -11.56993 -11.06033 -10.88349 -10.61529 -10.55374 -10.39395 -10.13956 -9.92956 -9.79612 -9.68510 -9.48284 -8.82912 -8.66699 -8.39001 -8.34966 -6.76951 -5.82267 -3.23505 1.54419 2.30682 2.33321 3.42135 3.55488 3.57889 3.60452 3.73362 3.82104 4.02548 4.08546 4.13762 4.56324 4.65760 4.68509 4.69011 4.79870 4.82629 5.01627 5.09187 5.15930 5.16679 5.30646 5.32710 5.49992 5.56502 5.58500 5.76725 5.81573 5.85616 5.88726 5.95427 6.04703 6.10773 6.21956 6.26235 6.30454 6.34684 6.41264 6.69272 6.77531 6.78566 6.85281 7.00477 7.62788 8.00979 8.05535 8.21720 8.53261 8.61774 9.09728 9.86779 10.22052 11.33541 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018684 B = 0.002361 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.229160 B =11855.050890 C =12721.046136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.348 6.348 3 C 0.043 3.957 4 C 0.132 3.868 5 N -0.591 5.591 6 C -0.256 4.256 7 H 0.076 0.924 8 C 0.044 3.956 9 N -0.894 5.894 10 Si 0.871 3.129 11 H -0.287 1.287 12 H -0.303 1.303 13 H -0.270 1.270 14 C 0.140 3.860 15 C 0.097 3.903 16 N -0.709 5.709 17 C 0.598 3.402 18 O -0.550 6.550 19 C -0.057 4.057 20 C 0.032 3.968 21 N -0.456 5.456 22 C 0.207 3.793 23 N -0.456 5.456 24 C -0.033 4.033 25 C -0.126 4.126 26 C -0.136 4.136 27 C 0.101 3.899 28 H 0.078 0.922 29 H 0.025 0.975 30 H 0.031 0.969 31 H 0.027 0.973 32 H 0.041 0.959 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.260 0.740 36 H 0.064 0.936 37 H 0.041 0.959 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.404 0.596 41 H 0.188 0.812 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.071 0.929 46 H 0.077 0.923 47 H 0.090 0.910 48 H 0.093 0.907 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.632 21.894 -19.873 29.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.265 6.265 3 C -0.037 4.037 4 C 0.006 3.994 5 N -0.312 5.312 6 C -0.385 4.385 7 H 0.094 0.906 8 C -0.156 4.156 9 N -0.535 5.535 10 Si 0.702 3.298 11 H -0.215 1.215 12 H -0.231 1.231 13 H -0.195 1.195 14 C 0.012 3.988 15 C -0.029 4.029 16 N -0.359 5.359 17 C 0.383 3.617 18 O -0.429 6.429 19 C -0.186 4.186 20 C -0.107 4.107 21 N -0.139 5.139 22 C -0.057 4.057 23 N -0.175 5.175 24 C -0.072 4.072 25 C -0.164 4.164 26 C -0.173 4.173 27 C -0.021 4.021 28 H 0.097 0.903 29 H 0.043 0.957 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.239 0.761 41 H 0.205 0.795 42 H 0.116 0.884 43 H 0.109 0.891 44 H 0.102 0.898 45 H 0.090 0.910 46 H 0.095 0.905 47 H 0.109 0.891 48 H 0.111 0.889 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.591 21.153 -19.254 28.828 hybrid contribution -0.296 0.826 0.299 0.927 sum -3.887 21.979 -18.955 29.283 Atomic orbital electron populations 1.22646 0.83739 1.01859 0.98362 1.88278 1.16976 1.26464 1.94813 1.23376 0.97358 0.85181 0.97767 1.21379 0.90377 0.96773 0.90833 1.43899 1.76410 1.04266 1.06657 1.18579 1.37034 0.80058 1.02780 0.90633 1.25339 0.97917 0.94801 0.97559 1.69910 1.44387 1.08482 1.30683 0.87010 0.81324 0.79626 0.81880 1.21502 1.23099 1.19533 1.21018 0.93604 0.94392 0.89750 1.22412 1.00825 0.94217 0.85412 1.45863 1.13156 1.51435 1.25487 1.16882 0.84560 0.79348 0.80926 1.90790 1.22702 1.53716 1.75652 1.20751 0.90593 1.07322 0.99917 1.22431 0.99684 0.97274 0.91266 1.45329 1.10141 1.37805 1.20638 1.23495 0.85162 1.02691 0.94340 1.70355 1.24156 1.10930 1.12094 1.20233 0.94653 0.98907 0.93414 1.21687 0.96021 1.02255 0.96478 1.21908 0.94900 0.97388 1.03123 1.22085 0.98562 0.96204 0.85232 0.90344 0.95661 0.95033 0.95495 0.94125 0.91579 0.92815 0.92991 0.91806 0.94043 0.92215 0.91106 0.76110 0.79539 0.88381 0.89096 0.89771 0.90978 0.90451 0.89106 0.88860 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 101.05 1.11 1.69 16 2 O -0.35 -8.17 10.31 -35.23 -0.36 -8.53 16 3 C 0.04 0.88 6.28 37.16 0.23 1.11 16 4 C 0.13 2.95 4.90 -4.04 -0.02 2.93 16 5 N -0.59 -14.19 2.04 -173.23 -0.35 -14.55 16 6 C -0.26 -7.30 9.53 -15.06 -0.14 -7.45 16 7 H 0.08 2.36 8.06 -52.48 -0.42 1.94 16 8 C 0.04 1.31 5.26 -17.43 -0.09 1.22 16 9 N -0.89 -28.10 13.97 55.49 0.78 -27.33 16 10 Si 0.87 22.57 25.15 -169.99 -4.28 18.29 16 11 H -0.29 -7.30 6.66 56.52 0.38 -6.93 16 12 H -0.30 -7.97 7.11 56.52 0.40 -7.56 16 13 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 14 C 0.14 2.78 5.83 -4.03 -0.02 2.75 16 15 C 0.10 1.88 5.95 -4.04 -0.02 1.86 16 16 N -0.71 -12.14 5.55 -61.41 -0.34 -12.48 16 17 C 0.60 10.68 7.81 -12.57 -0.10 10.58 16 18 O -0.55 -11.46 16.88 5.25 0.09 -11.37 16 19 C -0.06 -0.85 6.98 -82.97 -0.58 -1.43 16 20 C 0.03 0.38 11.32 -16.82 -0.19 0.19 16 21 N -0.46 -4.20 3.12 -113.41 -0.35 -4.55 16 22 C 0.21 2.17 7.65 -154.62 -1.18 0.99 16 23 N -0.46 -6.32 10.99 -7.00 -0.08 -6.40 16 24 C -0.03 -0.21 6.33 -27.48 -0.17 -0.38 16 25 C -0.13 -0.45 5.96 -26.46 -0.16 -0.61 16 26 C -0.14 -0.41 5.93 -26.53 -0.16 -0.56 16 27 C 0.10 0.47 6.96 -3.87 -0.03 0.44 16 28 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.04 0.80 5.94 -51.93 -0.31 0.50 16 33 H 0.07 1.64 3.50 -51.93 -0.18 1.46 16 34 H 0.05 1.03 7.92 -51.93 -0.41 0.62 16 35 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 36 H 0.06 1.28 8.04 -51.93 -0.42 0.86 16 37 H 0.04 0.73 7.91 -51.93 -0.41 0.32 16 38 H 0.06 1.21 6.00 -51.93 -0.31 0.90 16 39 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 40 H 0.40 6.18 8.18 -40.82 -0.33 5.85 16 41 H 0.19 1.88 8.06 -52.48 -0.42 1.46 16 42 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 45 H 0.07 0.29 8.12 -51.93 -0.42 -0.13 16 46 H 0.08 0.27 8.11 -51.93 -0.42 -0.15 16 47 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 48 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 LS Contribution 394.30 15.07 5.94 5.94 Total: -1.00 -37.40 394.30 -8.35 -45.75 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -7.87 Total: 1.89 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: -1.52 Total: 13.32 kcal Atomic # 7 Polarization: -64.95 SS G_CDS: -0.35 Total: -65.30 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.27 Total: -19.90 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.28 Total: 18.29 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.40 -8.35 -45.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701002401.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.363 kcal (2) G-P(sol) polarization free energy of solvation -37.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds