Wall clock time and date at job start Tue Mar 31 2020 19:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 113.99889 * 2 1 4 4 C 1.52996 * 109.46840 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47521 * 65.70517 * 4 3 2 6 6 C 1.36930 * 120.00050 * 267.90784 * 5 4 3 7 7 H 1.08004 * 120.00466 * 142.25141 * 6 5 4 8 8 C 1.38813 * 120.00137 * 322.25637 * 6 5 4 9 9 N 1.31614 * 120.00261 * 156.38819 * 8 6 5 10 10 Si 1.86800 * 119.99638 * 336.37986 * 8 6 5 11 11 H 1.48498 * 109.47004 * 95.51340 * 10 8 6 12 12 H 1.48498 * 109.47407 * 215.51113 * 10 8 6 13 13 H 1.48504 * 109.47332 * 335.51535 * 10 8 6 14 14 C 1.46505 * 119.99946 * 87.90190 * 5 4 3 15 15 C 1.53008 * 109.46859 * 270.00450 * 14 5 4 16 16 N 1.46500 * 109.46668 * 180.02562 * 15 14 5 17 17 C 1.34772 * 119.99854 * 180.02562 * 16 15 14 18 18 O 1.21626 * 120.00096 * 359.97438 * 17 16 15 19 19 C 1.47323 * 120.00305 * 179.97438 * 17 16 15 20 20 C 1.36569 * 126.21556 * 179.97438 * 19 17 16 21 21 N 1.34869 * 106.78973 * 179.97438 * 20 19 17 22 22 C 1.36371 * 107.84410 * 0.04796 * 21 20 19 23 23 N 1.29733 * 108.92093 * 359.95985 * 22 21 20 24 24 C 1.51103 * 123.85763 * 179.85177 * 22 21 20 25 25 C 1.53389 * 108.22931 * 344.11117 * 24 22 21 26 26 C 1.53141 * 109.25576 * 48.92183 * 25 24 22 27 27 C 1.46579 * 127.49924 * 180.11175 * 21 20 19 28 28 H 1.09001 * 109.47132 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47131 * 300.00325 * 1 2 3 30 30 H 1.08999 * 109.47235 * 60.00294 * 1 2 3 31 31 H 1.08996 * 109.47203 * 60.00001 * 3 2 1 32 32 H 1.09001 * 109.47149 * 299.99772 * 3 2 1 33 33 H 1.08994 * 109.47664 * 305.70351 * 4 3 2 34 34 H 1.09001 * 109.47031 * 185.70526 * 4 3 2 35 35 H 0.97008 * 119.99881 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.46765 * 150.00635 * 14 5 4 37 37 H 1.08999 * 109.47158 * 30.00265 * 14 5 4 38 38 H 1.08993 * 109.47049 * 60.00151 * 15 14 5 39 39 H 1.08999 * 109.47085 * 299.99860 * 15 14 5 40 40 H 0.96999 * 120.00023 * 359.97438 * 16 15 14 41 41 H 1.08004 * 126.60585 * 359.89381 * 20 19 17 42 42 H 1.08990 * 109.71768 * 224.41766 * 24 22 21 43 43 H 1.08997 * 109.72158 * 103.80659 * 24 22 21 44 44 H 1.08999 * 109.50781 * 168.85473 * 25 24 22 45 45 H 1.08993 * 109.50790 * 288.99090 * 25 24 22 46 46 H 1.08998 * 109.45976 * 50.21818 * 26 25 24 47 47 H 1.09001 * 109.46435 * 170.18901 * 26 25 24 48 48 H 1.08993 * 109.58822 * 42.98542 * 27 21 20 49 49 H 1.09001 * 109.58695 * 282.55883 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9779 0.5794 -1.2580 6 6 4.1403 -0.7775 -1.3452 7 1 3.8663 -1.2970 -2.2516 8 6 4.6572 -1.4853 -0.2688 9 7 4.3986 -2.7694 -0.1403 10 14 5.7200 -0.6153 0.9973 11 1 4.8779 -0.1963 2.1465 12 1 6.7809 -1.5395 1.4722 13 1 6.3459 0.5815 0.3800 14 6 4.2465 1.4257 -2.4232 15 6 2.9658 1.5826 -3.2457 16 7 3.2346 2.4285 -4.4112 17 6 2.2463 2.7067 -5.2842 18 8 1.1313 2.2551 -5.1046 19 6 2.5163 3.5577 -6.4560 20 6 1.6147 3.9186 -7.4162 21 7 2.2750 4.6967 -8.2980 22 6 3.5668 4.8046 -7.8745 23 7 3.7081 4.1260 -6.7779 24 6 4.6278 5.5971 -8.6021 25 6 4.1229 5.8845 -10.0218 26 6 2.6979 6.4407 -9.9481 27 6 1.7375 5.3318 -9.5047 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.8499 0.5583 0.8353 34 1 3.9783 2.1754 0.1028 35 1 4.7595 -3.2639 0.6122 36 1 5.0187 0.9632 -3.0379 37 1 4.5864 2.4062 -2.0896 38 1 2.1937 2.0451 -2.6310 39 1 2.6259 0.6022 -3.5793 40 1 4.1237 2.7889 -4.5542 41 1 0.5737 3.6344 -7.4615 42 1 5.5505 5.0190 -8.6500 43 1 4.8088 6.5361 -8.0791 44 1 4.7749 6.6162 -10.4988 45 1 4.1239 4.9620 -10.6022 46 1 2.6643 7.2592 -9.2290 47 1 2.4001 6.8078 -10.9302 48 1 0.7595 5.7609 -9.2872 49 1 1.6451 4.5898 -10.2979 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701002401.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:36 Heat of formation + Delta-G solvation = -24.042267 kcal Electronic energy + Delta-G solvation = -29135.888610 eV Core-core repulsion = 25098.799509 eV Total energy + Delta-G solvation = -4037.089101 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.42086 -40.44264 -39.08132 -37.55853 -37.33507 -35.70006 -34.38582 -33.67447 -31.57558 -30.78511 -29.64809 -29.33821 -27.17404 -26.16355 -25.20649 -24.11524 -23.20760 -23.02924 -22.34109 -21.03830 -19.97522 -18.87288 -18.59149 -17.73417 -17.30680 -17.17994 -17.02279 -16.78663 -16.40987 -16.24114 -15.77112 -15.36462 -15.31816 -15.16430 -15.07143 -14.86486 -14.66426 -14.57240 -14.40578 -14.11501 -14.07486 -13.59378 -13.24213 -12.91017 -12.77060 -12.57413 -12.42910 -12.30749 -12.07981 -11.97409 -11.90197 -11.88964 -11.69528 -11.43384 -11.37833 -11.12949 -10.70555 -10.55185 -10.40462 -10.08059 -9.46911 -8.77833 -8.08469 -5.47433 0.52941 1.35830 1.37015 1.46130 1.57872 1.63666 2.25255 2.49298 2.51834 3.08867 3.11261 3.17462 3.50466 3.60622 3.64446 3.82249 3.99495 4.08802 4.15171 4.20931 4.33713 4.36235 4.38832 4.44623 4.45516 4.50362 4.51630 4.56462 4.63039 4.64617 4.73868 4.84363 4.87446 4.93384 4.97678 4.98017 5.09668 5.12909 5.15501 5.18979 5.32512 5.42814 5.46377 6.01318 6.06370 6.25960 6.50792 6.54901 6.87112 7.04548 7.23970 7.70023 8.08527 9.11845 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018684 B = 0.002361 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.229160 B =11855.050890 C =12721.046136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.398 6.398 3 C 0.043 3.957 4 C 0.123 3.877 5 N -0.602 5.602 6 C -0.241 4.241 7 H 0.026 0.974 8 C -0.016 4.016 9 N -0.948 5.948 10 Si 0.944 3.056 11 H -0.278 1.278 12 H -0.311 1.311 13 H -0.249 1.249 14 C 0.143 3.857 15 C 0.117 3.883 16 N -0.702 5.702 17 C 0.595 3.405 18 O -0.590 6.590 19 C -0.097 4.097 20 C 0.044 3.956 21 N -0.448 5.448 22 C 0.210 3.790 23 N -0.489 5.489 24 C -0.035 4.035 25 C -0.122 4.122 26 C -0.131 4.131 27 C 0.089 3.911 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.036 0.964 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.043 0.957 34 H 0.096 0.904 35 H 0.259 0.741 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.055 0.945 39 H 0.028 0.972 40 H 0.415 0.585 41 H 0.201 0.799 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.107 0.893 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.119 0.881 48 H 0.110 0.890 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.198 26.146 -21.162 33.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.317 6.317 3 C -0.036 4.036 4 C -0.002 4.002 5 N -0.324 5.324 6 C -0.371 4.371 7 H 0.044 0.956 8 C -0.212 4.212 9 N -0.592 5.592 10 Si 0.772 3.228 11 H -0.205 1.205 12 H -0.240 1.240 13 H -0.172 1.172 14 C 0.017 3.983 15 C -0.009 4.009 16 N -0.353 5.353 17 C 0.382 3.618 18 O -0.471 6.471 19 C -0.225 4.225 20 C -0.098 4.098 21 N -0.129 5.129 22 C -0.055 4.055 23 N -0.209 5.209 24 C -0.074 4.074 25 C -0.160 4.160 26 C -0.168 4.168 27 C -0.030 4.030 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.113 0.887 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.073 0.927 39 H 0.047 0.953 40 H 0.251 0.749 41 H 0.218 0.782 42 H 0.117 0.883 43 H 0.121 0.879 44 H 0.126 0.874 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.137 0.863 48 H 0.128 0.872 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.145 25.487 -20.584 32.912 hybrid contribution -0.538 -0.432 0.509 0.857 sum -3.682 25.055 -20.076 32.316 Atomic orbital electron populations 1.22778 0.81510 1.02477 0.99967 1.88201 1.19698 1.28549 1.95206 1.23382 0.96190 0.84477 0.99531 1.21579 0.91836 0.98027 0.88757 1.43954 1.76927 1.02997 1.08496 1.18321 1.35592 0.82273 1.00864 0.95583 1.25988 0.99381 0.95441 1.00363 1.70061 1.46382 1.10579 1.32163 0.85847 0.78855 0.78712 0.79355 1.20526 1.24035 1.17210 1.21092 0.93381 0.95385 0.88454 1.21957 1.00446 0.92481 0.85996 1.45698 1.13744 1.50972 1.24848 1.17339 0.83877 0.79036 0.81504 1.90749 1.24146 1.55460 1.76770 1.20423 0.92397 1.09391 1.00316 1.22634 0.99922 0.96481 0.90767 1.45639 1.09588 1.36607 1.21092 1.24311 0.86409 1.01401 0.93361 1.70270 1.24064 1.12411 1.14147 1.20490 0.93444 0.98652 0.94799 1.21706 0.96867 1.02890 0.94503 1.21950 0.93937 0.96424 1.04506 1.22564 0.99791 0.97069 0.83625 0.90410 0.92684 0.94579 0.92139 0.93664 0.93895 0.88653 0.93234 0.92300 0.90112 0.92664 0.95338 0.74901 0.78213 0.88344 0.87904 0.87443 0.91244 0.90624 0.86287 0.87190 0.87930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.07 11.01 113.37 1.25 2.31 16 2 O -0.40 -18.78 10.31 -148.98 -1.54 -20.32 16 3 C 0.04 1.69 6.28 71.98 0.45 2.14 16 4 C 0.12 5.23 4.90 86.38 0.42 5.65 16 5 N -0.60 -28.80 2.04 -701.99 -1.43 -30.23 16 6 C -0.24 -14.23 9.53 84.03 0.80 -13.42 16 7 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 8 C -0.02 -0.95 5.26 84.86 0.45 -0.50 16 9 N -0.95 -62.18 13.97 21.65 0.30 -61.88 16 10 Si 0.94 47.19 25.15 68.60 1.73 48.92 16 11 H -0.28 -13.38 6.66 99.48 0.66 -12.72 16 12 H -0.31 -15.85 7.11 99.48 0.71 -15.14 16 13 H -0.25 -11.40 7.11 99.48 0.71 -10.70 16 14 C 0.14 5.62 5.83 86.38 0.50 6.12 16 15 C 0.12 4.70 5.95 86.38 0.51 5.21 16 16 N -0.70 -24.57 5.55 -466.46 -2.59 -27.16 16 17 C 0.59 21.97 7.81 86.63 0.68 22.65 16 18 O -0.59 -25.62 16.88 -4.11 -0.07 -25.69 16 19 C -0.10 -2.95 6.98 40.51 0.28 -2.67 16 20 C 0.04 1.01 11.32 83.84 0.95 1.96 16 21 N -0.45 -7.39 3.12 -512.73 -1.60 -8.99 16 22 C 0.21 4.09 7.65 138.05 1.06 5.14 16 23 N -0.49 -13.39 10.99 -176.07 -1.94 -15.33 16 24 C -0.04 -0.35 6.33 30.11 0.19 -0.16 16 25 C -0.12 -0.44 5.96 30.77 0.18 -0.26 16 26 C -0.13 -0.26 5.93 30.73 0.18 -0.08 16 27 C 0.09 0.54 6.96 86.45 0.60 1.14 16 28 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.05 1.74 5.94 -2.39 -0.01 1.72 16 33 H 0.04 2.04 3.50 -2.39 -0.01 2.04 16 34 H 0.10 3.24 7.92 -2.39 -0.02 3.22 16 35 H 0.26 16.10 8.31 -92.70 -0.77 15.33 16 36 H 0.06 2.36 8.04 -2.39 -0.02 2.34 16 37 H 0.08 2.59 7.91 -2.39 -0.02 2.57 16 38 H 0.06 2.26 6.00 -2.39 -0.01 2.25 16 39 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.41 12.73 8.18 -92.71 -0.76 11.97 16 41 H 0.20 3.90 8.06 -2.91 -0.02 3.87 16 42 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 45 H 0.07 0.33 8.12 -2.39 -0.02 0.31 16 46 H 0.08 0.23 8.11 -2.39 -0.02 0.21 16 47 H 0.12 -0.34 8.14 -2.39 -0.02 -0.36 16 48 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 49 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 Total: -1.00 -87.01 394.30 1.53 -85.48 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.15 Total: 19.97 kcal Atomic # 6 Polarization: 26.72 SS G_CDS: 8.51 Total: 35.23 kcal Atomic # 7 Polarization: -136.33 SS G_CDS: -7.25 Total: -143.58 kcal Atomic # 8 Polarization: -44.40 SS G_CDS: -1.60 Total: -46.01 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 1.73 Total: 48.92 kcal Total: -87.01 1.53 -85.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701002401.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.434 kcal (2) G-P(sol) polarization free energy of solvation -87.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds