Wall clock time and date at job start Tue Mar 31 2020 19:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 113.99951 * 2 1 4 4 C 1.52996 * 109.47089 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47179 * 64.99958 * 4 3 2 6 6 C 1.36939 * 120.00137 * 269.99941 * 5 4 3 7 7 H 1.07991 * 120.00188 * 142.64094 * 6 5 4 8 8 C 1.38818 * 119.99591 * 322.64539 * 6 5 4 9 9 N 1.31621 * 119.99374 * 157.14581 * 8 6 5 10 10 Si 1.86799 * 120.00514 * 337.14169 * 8 6 5 11 11 H 1.48497 * 109.46845 * 95.36582 * 10 8 6 12 12 H 1.48502 * 109.47394 * 215.37080 * 10 8 6 13 13 H 1.48511 * 109.46866 * 335.36954 * 10 8 6 14 14 C 1.46497 * 119.99913 * 90.00485 * 5 4 3 15 15 C 1.53000 * 109.46792 * 266.84281 * 14 5 4 16 16 N 1.46501 * 109.47359 * 179.05165 * 15 14 5 17 17 C 1.34772 * 120.00288 * 180.02562 * 16 15 14 18 18 O 1.21281 * 120.00139 * 0.02562 * 17 16 15 19 19 C 1.50702 * 120.00166 * 179.97438 * 17 16 15 20 20 H 1.08995 * 109.42784 * 299.90310 * 19 17 16 21 21 C 1.53026 * 109.42950 * 180.02562 * 19 17 16 22 22 C 1.53378 * 109.69977 * 168.22568 * 21 19 17 23 23 C 1.50821 * 108.26718 * 50.66863 * 22 21 19 24 24 N 1.30133 * 128.30144 * 163.16288 * 23 22 21 25 25 N 1.40312 * 108.12085 * 180.27374 * 24 23 22 26 26 H 0.96998 * 126.00440 * 179.97438 * 25 24 23 27 27 C 1.35202 * 107.99456 * 359.95395 * 25 24 23 28 28 C 1.34572 * 107.61499 * 359.96583 * 27 25 24 29 29 C 1.50886 * 128.32302 * 180.13845 * 28 27 25 30 30 H 1.08997 * 109.47082 * 299.99870 * 1 2 3 31 31 H 1.09004 * 109.47382 * 59.99770 * 1 2 3 32 32 H 1.08995 * 109.47435 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47132 * 60.00442 * 3 2 1 34 34 H 1.08998 * 109.47051 * 299.99748 * 3 2 1 35 35 H 1.09005 * 109.47036 * 305.00001 * 4 3 2 36 36 H 1.09000 * 109.47590 * 185.00200 * 4 3 2 37 37 H 0.97003 * 119.99765 * 179.97438 * 9 8 6 38 38 H 1.08998 * 109.47447 * 146.84935 * 14 5 4 39 39 H 1.08998 * 109.47264 * 26.84549 * 14 5 4 40 40 H 1.09002 * 109.46724 * 59.05867 * 15 14 5 41 41 H 1.08997 * 109.47499 * 299.05395 * 15 14 5 42 42 H 0.97006 * 119.99624 * 0.02562 * 16 15 14 43 43 H 1.08998 * 109.42500 * 288.28271 * 21 19 17 44 44 H 1.09000 * 109.42502 * 48.17118 * 21 19 17 45 45 H 1.08999 * 109.71512 * 170.29957 * 22 21 19 46 46 H 1.09004 * 109.71446 * 290.94492 * 22 21 19 47 47 H 1.07996 * 126.19192 * 179.97438 * 27 25 24 48 48 H 1.08991 * 109.72111 * 43.75505 * 29 28 27 49 49 H 1.09001 * 109.71971 * 283.10076 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.0967 -0.7970 -1.3369 7 1 3.8247 -1.3079 -2.2486 8 6 4.5691 -1.5202 -0.2503 9 7 4.2797 -2.7990 -0.1350 10 14 5.6155 -0.6786 1.0483 11 1 4.7511 -0.2435 2.1747 12 1 6.6411 -1.6284 1.5496 13 1 6.2860 0.5052 0.4529 14 6 4.2864 1.4007 -2.4148 15 6 3.0425 1.5319 -3.2959 16 7 3.3467 2.3866 -4.4462 17 6 2.3944 2.6456 -5.3639 18 8 1.2853 2.1714 -5.2374 19 6 2.7072 3.5253 -6.5469 20 1 3.0082 4.5121 -6.1953 21 6 1.4622 3.6568 -7.4268 22 6 1.6745 4.7703 -8.4601 23 6 2.9925 4.5280 -9.1520 24 7 3.4205 5.0339 -10.2720 25 7 4.7001 4.5162 -10.5240 26 1 5.2572 4.7213 -11.2910 27 6 5.0202 3.6817 -9.5096 28 6 3.9857 3.6712 -8.6489 29 6 3.8507 2.9025 -7.3576 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8514 0.5682 0.8410 36 1 3.9785 2.1765 0.0890 37 1 4.6101 -3.3045 0.6241 38 1 5.0911 0.9410 -2.9885 39 1 4.5990 2.3891 -2.0779 40 1 2.2326 1.9762 -2.7172 41 1 2.7398 0.5452 -3.6464 42 1 4.2337 2.7662 -4.5472 43 1 1.2813 2.7136 -7.9423 44 1 0.6017 3.9000 -6.8035 45 1 0.8673 4.7513 -9.1922 46 1 1.6946 5.7380 -7.9589 47 1 5.9397 3.1244 -9.4083 48 1 4.7801 2.9671 -6.7922 49 1 3.6225 1.8586 -7.5732 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701003129.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:01 Heat of formation + Delta-G solvation = 13.448992 kcal Electronic energy + Delta-G solvation = -29361.676839 eV Core-core repulsion = 25326.213481 eV Total energy + Delta-G solvation = -4035.463358 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.74662 -39.69022 -37.47659 -36.38940 -35.76888 -34.23078 -32.53952 -31.57918 -30.72900 -29.92115 -28.95721 -27.50111 -25.62503 -24.92431 -23.92386 -22.72615 -21.76975 -21.27124 -20.69515 -19.91307 -19.00186 -17.90917 -17.05317 -16.71463 -16.07054 -15.66796 -15.59154 -15.31431 -15.08211 -14.65879 -14.56229 -14.26489 -13.99372 -13.91483 -13.61322 -13.49252 -13.27315 -13.02734 -12.83187 -12.55702 -12.40177 -12.09116 -11.91622 -11.85820 -11.64013 -11.22712 -11.14910 -11.04804 -10.94927 -10.68525 -10.62695 -10.55309 -10.23126 -9.74092 -9.64890 -9.58402 -9.53217 -8.87922 -8.70190 -8.61869 -8.41090 -6.85102 -5.87986 -3.30318 1.62522 2.46224 2.57396 2.83856 3.35984 3.40192 3.50015 3.53169 4.16861 4.48689 4.58805 4.62764 4.65691 4.67442 4.87669 4.98956 5.04002 5.19227 5.24283 5.30409 5.45067 5.47747 5.51151 5.68639 5.70140 5.70912 5.77681 5.80245 5.88169 5.89587 5.97250 6.00400 6.03959 6.14224 6.15200 6.17587 6.23408 6.33616 6.39541 6.59020 6.64971 6.75497 6.88007 7.00001 7.40389 7.75437 7.99866 8.15352 8.43953 8.49562 9.02135 9.80205 10.14144 11.27787 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017388 B = 0.002468 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.920799 B =11340.740759 C =12331.694444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.346 6.346 3 C 0.044 3.956 4 C 0.132 3.868 5 N -0.591 5.591 6 C -0.258 4.258 7 H 0.076 0.924 8 C 0.046 3.954 9 N -0.894 5.894 10 Si 0.874 3.126 11 H -0.287 1.287 12 H -0.303 1.303 13 H -0.272 1.272 14 C 0.140 3.860 15 C 0.096 3.904 16 N -0.725 5.725 17 C 0.513 3.487 18 O -0.541 6.541 19 C -0.104 4.104 20 H 0.097 0.903 21 C -0.097 4.097 22 C -0.040 4.040 23 C 0.085 3.915 24 N -0.292 5.292 25 N -0.487 5.487 26 H 0.438 0.562 27 C 0.063 3.937 28 C -0.233 4.233 29 C -0.031 4.031 30 H 0.025 0.975 31 H 0.031 0.969 32 H 0.078 0.922 33 H 0.027 0.973 34 H 0.039 0.961 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.261 0.739 38 H 0.061 0.939 39 H 0.041 0.959 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.396 0.604 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.178 0.822 48 H 0.077 0.923 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.370 16.819 -15.066 22.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.264 6.264 3 C -0.036 4.036 4 C 0.006 3.994 5 N -0.313 5.313 6 C -0.386 4.386 7 H 0.094 0.906 8 C -0.155 4.155 9 N -0.534 5.534 10 Si 0.704 3.296 11 H -0.215 1.215 12 H -0.231 1.231 13 H -0.197 1.197 14 C 0.013 3.987 15 C -0.030 4.030 16 N -0.376 5.376 17 C 0.298 3.702 18 O -0.418 6.418 19 C -0.125 4.125 20 H 0.115 0.885 21 C -0.135 4.135 22 C -0.079 4.079 23 C -0.084 4.084 24 N -0.114 5.114 25 N -0.195 5.195 26 H 0.282 0.718 27 C -0.082 4.082 28 C -0.245 4.245 29 C -0.070 4.070 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.097 0.903 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.229 0.771 43 H 0.092 0.908 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.103 0.897 47 H 0.195 0.805 48 H 0.095 0.905 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.525 16.866 -15.816 23.127 hybrid contribution 1.306 0.322 1.006 1.679 sum 0.781 17.188 -14.810 22.702 Atomic orbital electron populations 1.22646 0.83723 1.01905 0.98326 1.88296 1.16972 1.26312 1.94796 1.23331 0.97275 0.85268 0.97679 1.21389 0.90485 0.96544 0.90945 1.43895 1.76198 1.03848 1.07348 1.18559 1.38475 0.79557 1.02005 0.90623 1.25318 0.97839 0.94798 0.97549 1.69897 1.44694 1.08366 1.30475 0.86996 0.81144 0.79259 0.82182 1.21472 1.23143 1.19650 1.21004 0.93818 0.94371 0.89513 1.22369 1.00541 0.94182 0.85869 1.46113 1.14431 1.51665 1.25382 1.20515 0.84862 0.81371 0.83470 1.90707 1.22417 1.51993 1.76699 1.21355 0.97494 0.99698 0.93977 0.88485 1.21386 0.96969 0.98938 0.96216 1.20168 0.90959 0.99777 0.96983 1.22402 0.97397 0.95807 0.92764 1.77011 0.94200 1.22179 1.18049 1.46326 1.14829 1.37110 1.21239 0.71784 1.22087 1.00357 0.96124 0.89677 1.20026 0.95646 1.07520 1.01277 1.19939 0.97465 0.98364 0.91204 0.95650 0.95080 0.90312 0.95492 0.94299 0.91814 0.92735 0.92946 0.92113 0.94041 0.92311 0.91174 0.77083 0.90833 0.89732 0.89626 0.89667 0.80539 0.90456 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 101.05 1.11 1.67 16 2 O -0.35 -7.88 10.18 -35.23 -0.36 -8.24 16 3 C 0.04 0.86 6.28 37.16 0.23 1.09 16 4 C 0.13 2.79 4.98 -4.04 -0.02 2.77 16 5 N -0.59 -13.35 2.06 -173.24 -0.36 -13.70 16 6 C -0.26 -7.03 9.42 -15.06 -0.14 -7.17 16 7 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 8 C 0.05 1.31 5.30 -17.43 -0.09 1.21 16 9 N -0.89 -27.38 13.97 55.49 0.78 -26.61 16 10 Si 0.87 21.87 25.07 -169.99 -4.26 17.61 16 11 H -0.29 -7.08 6.66 56.52 0.38 -6.71 16 12 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 13 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 14 C 0.14 2.49 5.83 -4.04 -0.02 2.46 16 15 C 0.10 1.64 5.99 -4.04 -0.02 1.61 16 16 N -0.72 -9.44 5.46 -60.29 -0.33 -9.77 16 17 C 0.51 7.03 7.14 -10.99 -0.08 6.96 16 18 O -0.54 -9.85 15.77 5.56 0.09 -9.76 16 19 C -0.10 -1.02 2.47 -91.56 -0.23 -1.25 16 20 H 0.10 0.81 8.10 -51.93 -0.42 0.39 16 21 C -0.10 -0.96 4.65 -26.52 -0.12 -1.08 16 22 C -0.04 -0.34 6.30 -27.63 -0.17 -0.52 16 23 C 0.09 0.87 7.10 -82.41 -0.58 0.29 16 24 N -0.29 -3.18 12.68 33.72 0.43 -2.75 16 25 N -0.49 -3.80 7.37 30.35 0.22 -3.58 16 26 H 0.44 1.97 8.96 -182.44 -1.64 0.34 16 27 C 0.06 0.47 11.95 -17.36 -0.21 0.26 16 28 C -0.23 -2.15 5.89 -104.98 -0.62 -2.77 16 29 C -0.03 -0.27 5.40 -27.59 -0.15 -0.42 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.04 0.73 6.30 -51.93 -0.33 0.40 16 35 H 0.06 1.51 3.28 -51.93 -0.17 1.34 16 36 H 0.05 0.97 7.87 -51.93 -0.41 0.56 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.06 1.07 8.06 -51.93 -0.42 0.65 16 39 H 0.04 0.63 7.86 -51.93 -0.41 0.22 16 40 H 0.06 1.08 6.30 -51.93 -0.33 0.76 16 41 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.40 3.86 8.10 -40.82 -0.33 3.53 16 43 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 44 H 0.08 0.89 7.68 -51.93 -0.40 0.49 16 45 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.18 0.70 8.06 -52.49 -0.42 0.28 16 48 H 0.08 0.54 7.86 -51.93 -0.41 0.14 16 49 H 0.08 0.76 8.12 -51.93 -0.42 0.34 16 LS Contribution 391.14 15.07 5.89 5.89 Total: -1.00 -36.40 391.14 -8.08 -44.48 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -9.06 Total: 1.32 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -1.12 Total: 5.11 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: 0.74 Total: -56.41 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.27 Total: -18.00 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.26 Total: 17.61 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.40 -8.08 -44.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701003129.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.927 kcal (2) G-P(sol) polarization free energy of solvation -36.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds