Wall clock time and date at job start Tue Mar 31 2020 19:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 113.99951 * 2 1 4 4 C 1.52996 * 109.47089 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47179 * 64.99958 * 4 3 2 6 6 C 1.36939 * 120.00137 * 269.99941 * 5 4 3 7 7 H 1.07991 * 120.00188 * 142.64094 * 6 5 4 8 8 C 1.38818 * 119.99591 * 322.64539 * 6 5 4 9 9 N 1.31621 * 119.99374 * 157.14581 * 8 6 5 10 10 Si 1.86799 * 120.00514 * 337.14169 * 8 6 5 11 11 H 1.48497 * 109.46845 * 95.36582 * 10 8 6 12 12 H 1.48502 * 109.47394 * 215.37080 * 10 8 6 13 13 H 1.48511 * 109.46866 * 335.36954 * 10 8 6 14 14 C 1.46497 * 119.99913 * 90.00485 * 5 4 3 15 15 C 1.53000 * 109.46792 * 266.84281 * 14 5 4 16 16 N 1.46501 * 109.47359 * 179.05165 * 15 14 5 17 17 C 1.34772 * 120.00288 * 180.02562 * 16 15 14 18 18 O 1.21281 * 120.00139 * 0.02562 * 17 16 15 19 19 C 1.50702 * 120.00166 * 179.97438 * 17 16 15 20 20 H 1.08995 * 109.42784 * 299.90310 * 19 17 16 21 21 C 1.53026 * 109.42950 * 180.02562 * 19 17 16 22 22 C 1.53378 * 109.69977 * 168.22568 * 21 19 17 23 23 C 1.50821 * 108.26718 * 50.66863 * 22 21 19 24 24 N 1.30133 * 128.30144 * 163.16288 * 23 22 21 25 25 N 1.40312 * 108.12085 * 180.27374 * 24 23 22 26 26 H 0.96998 * 126.00440 * 179.97438 * 25 24 23 27 27 C 1.35202 * 107.99456 * 359.95395 * 25 24 23 28 28 C 1.34572 * 107.61499 * 359.96583 * 27 25 24 29 29 C 1.50886 * 128.32302 * 180.13845 * 28 27 25 30 30 H 1.08997 * 109.47082 * 299.99870 * 1 2 3 31 31 H 1.09004 * 109.47382 * 59.99770 * 1 2 3 32 32 H 1.08995 * 109.47435 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47132 * 60.00442 * 3 2 1 34 34 H 1.08998 * 109.47051 * 299.99748 * 3 2 1 35 35 H 1.09005 * 109.47036 * 305.00001 * 4 3 2 36 36 H 1.09000 * 109.47590 * 185.00200 * 4 3 2 37 37 H 0.97003 * 119.99765 * 179.97438 * 9 8 6 38 38 H 1.08998 * 109.47447 * 146.84935 * 14 5 4 39 39 H 1.08998 * 109.47264 * 26.84549 * 14 5 4 40 40 H 1.09002 * 109.46724 * 59.05867 * 15 14 5 41 41 H 1.08997 * 109.47499 * 299.05395 * 15 14 5 42 42 H 0.97006 * 119.99624 * 0.02562 * 16 15 14 43 43 H 1.08998 * 109.42500 * 288.28271 * 21 19 17 44 44 H 1.09000 * 109.42502 * 48.17118 * 21 19 17 45 45 H 1.08999 * 109.71512 * 170.29957 * 22 21 19 46 46 H 1.09004 * 109.71446 * 290.94492 * 22 21 19 47 47 H 1.07996 * 126.19192 * 179.97438 * 27 25 24 48 48 H 1.08991 * 109.72111 * 43.75505 * 29 28 27 49 49 H 1.09001 * 109.71971 * 283.10076 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.0967 -0.7970 -1.3369 7 1 3.8247 -1.3079 -2.2486 8 6 4.5691 -1.5202 -0.2503 9 7 4.2797 -2.7990 -0.1350 10 14 5.6155 -0.6786 1.0483 11 1 4.7511 -0.2435 2.1747 12 1 6.6411 -1.6284 1.5496 13 1 6.2860 0.5052 0.4529 14 6 4.2864 1.4007 -2.4148 15 6 3.0425 1.5319 -3.2959 16 7 3.3467 2.3866 -4.4462 17 6 2.3944 2.6456 -5.3639 18 8 1.2853 2.1714 -5.2374 19 6 2.7072 3.5253 -6.5469 20 1 3.0082 4.5121 -6.1953 21 6 1.4622 3.6568 -7.4268 22 6 1.6745 4.7703 -8.4601 23 6 2.9925 4.5280 -9.1520 24 7 3.4205 5.0339 -10.2720 25 7 4.7001 4.5162 -10.5240 26 1 5.2572 4.7213 -11.2910 27 6 5.0202 3.6817 -9.5096 28 6 3.9857 3.6712 -8.6489 29 6 3.8507 2.9025 -7.3576 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8514 0.5682 0.8410 36 1 3.9785 2.1765 0.0890 37 1 4.6101 -3.3045 0.6241 38 1 5.0911 0.9410 -2.9885 39 1 4.5990 2.3891 -2.0779 40 1 2.2326 1.9762 -2.7172 41 1 2.7398 0.5452 -3.6464 42 1 4.2337 2.7662 -4.5472 43 1 1.2813 2.7136 -7.9423 44 1 0.6017 3.9000 -6.8035 45 1 0.8673 4.7513 -9.1922 46 1 1.6946 5.7380 -7.9589 47 1 5.9397 3.1244 -9.4083 48 1 4.7801 2.9671 -6.7922 49 1 3.6225 1.8586 -7.5732 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701003129.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:00 Heat of formation + Delta-G solvation = -14.530209 kcal Electronic energy + Delta-G solvation = -29362.890108 eV Core-core repulsion = 25326.213481 eV Total energy + Delta-G solvation = -4036.676628 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.41015 -40.80877 -39.08018 -37.59363 -37.02424 -35.65296 -33.68413 -33.19558 -31.46834 -31.23187 -30.04849 -28.92873 -27.16173 -25.87422 -25.38581 -23.97619 -23.01726 -22.30428 -21.91536 -21.05325 -19.74336 -18.77293 -18.53079 -17.99130 -17.69454 -17.01802 -16.84977 -16.51196 -16.31293 -16.05677 -15.75947 -15.48609 -15.36486 -15.02292 -14.75001 -14.71424 -14.36212 -14.24820 -14.07270 -13.68838 -13.66416 -13.52748 -13.17419 -12.90102 -12.84675 -12.70026 -12.51511 -12.39718 -12.27774 -11.97726 -11.83392 -11.82837 -11.65304 -11.37827 -11.26299 -10.78562 -10.50881 -10.35994 -10.31524 -9.95043 -9.33730 -8.73606 -8.05100 -5.43926 1.01285 1.39340 1.47937 1.59038 1.71633 1.79565 2.04860 2.25549 2.54411 3.14374 3.14780 3.44150 3.57024 3.82668 3.89485 3.94053 4.16080 4.22992 4.27741 4.34253 4.39943 4.41217 4.46744 4.53494 4.56031 4.58557 4.65119 4.67151 4.68021 4.77514 4.79459 4.84150 4.86413 5.02837 5.04482 5.06058 5.17823 5.18357 5.25556 5.30468 5.36628 5.57685 5.72514 6.04616 6.29661 6.51943 6.57496 6.69251 6.76463 7.08767 7.38733 7.74667 8.12024 9.15307 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017388 B = 0.002468 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.920799 B =11340.740759 C =12331.694444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.397 6.397 3 C 0.043 3.957 4 C 0.123 3.877 5 N -0.603 5.603 6 C -0.236 4.236 7 H 0.028 0.972 8 C -0.017 4.017 9 N -0.951 5.951 10 Si 0.944 3.056 11 H -0.282 1.282 12 H -0.316 1.316 13 H -0.244 1.244 14 C 0.142 3.858 15 C 0.115 3.885 16 N -0.709 5.709 17 C 0.512 3.488 18 O -0.591 6.591 19 C -0.091 4.091 20 H 0.123 0.877 21 C -0.093 4.093 22 C -0.034 4.034 23 C 0.071 3.929 24 N -0.328 5.328 25 N -0.480 5.480 26 H 0.451 0.549 27 C 0.079 3.921 28 C -0.257 4.257 29 C -0.024 4.024 30 H 0.054 0.946 31 H 0.036 0.964 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.046 0.954 35 H 0.038 0.962 36 H 0.099 0.901 37 H 0.257 0.743 38 H 0.062 0.938 39 H 0.086 0.914 40 H 0.048 0.952 41 H 0.023 0.977 42 H 0.417 0.583 43 H 0.054 0.946 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.100 0.900 47 H 0.214 0.786 48 H 0.101 0.899 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.231 20.377 -15.074 25.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.316 6.316 3 C -0.036 4.036 4 C -0.002 4.002 5 N -0.326 5.326 6 C -0.366 4.366 7 H 0.045 0.955 8 C -0.212 4.212 9 N -0.595 5.595 10 Si 0.773 3.227 11 H -0.210 1.210 12 H -0.245 1.245 13 H -0.168 1.168 14 C 0.016 3.984 15 C -0.011 4.011 16 N -0.362 5.362 17 C 0.299 3.701 18 O -0.471 6.471 19 C -0.112 4.112 20 H 0.141 0.859 21 C -0.131 4.131 22 C -0.073 4.073 23 C -0.097 4.097 24 N -0.151 5.151 25 N -0.190 5.190 26 H 0.298 0.702 27 C -0.068 4.068 28 C -0.268 4.268 29 C -0.063 4.063 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.117 0.883 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.104 0.896 40 H 0.066 0.934 41 H 0.041 0.959 42 H 0.254 0.746 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.106 0.894 46 H 0.118 0.882 47 H 0.231 0.769 48 H 0.120 0.880 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.367 20.515 -15.866 25.971 hybrid contribution 0.634 -0.776 0.864 1.323 sum 2.001 19.738 -15.003 24.873 Atomic orbital electron populations 1.22760 0.81637 1.02357 0.99931 1.88218 1.19559 1.28618 1.95192 1.23372 0.96328 0.84418 0.99438 1.21587 0.91724 0.97935 0.88968 1.43975 1.76701 1.02533 1.09347 1.18315 1.36356 0.82005 0.99924 0.95457 1.25969 0.99494 0.95319 1.00452 1.70060 1.47047 1.10533 1.31881 0.85854 0.78806 0.78523 0.79470 1.20974 1.24509 1.16767 1.21146 0.93691 0.95609 0.87973 1.21848 1.00016 0.92459 0.86806 1.45873 1.15509 1.50726 1.24084 1.21237 0.83961 0.80848 0.84009 1.90692 1.24641 1.53979 1.77822 1.21326 0.97899 0.99851 0.92163 0.85916 1.21309 0.96875 0.98634 0.96323 1.20126 0.90807 0.99719 0.96610 1.22627 0.97980 0.96189 0.92894 1.76944 0.95838 1.23633 1.18662 1.46390 1.14130 1.36637 1.21799 0.70214 1.22642 1.00889 0.94882 0.88388 1.20138 0.96296 1.08337 1.02059 1.19885 0.97804 0.97235 0.91362 0.92797 0.94502 0.90632 0.92426 0.93567 0.94395 0.88256 0.93401 0.91979 0.89570 0.93420 0.95864 0.74605 0.92687 0.90654 0.89386 0.88186 0.76945 0.88050 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.05 11.01 113.37 1.25 2.29 16 2 O -0.40 -18.05 10.18 -148.98 -1.52 -19.57 16 3 C 0.04 1.60 6.28 71.98 0.45 2.05 16 4 C 0.12 4.83 4.98 86.38 0.43 5.26 16 5 N -0.60 -26.46 2.06 -702.01 -1.45 -27.90 16 6 C -0.24 -13.19 9.42 84.03 0.79 -12.40 16 7 H 0.03 1.76 8.06 -2.92 -0.02 1.74 16 8 C -0.02 -0.97 5.30 84.86 0.45 -0.52 16 9 N -0.95 -60.77 13.97 21.65 0.30 -60.47 16 10 Si 0.94 45.37 25.07 68.60 1.72 47.09 16 11 H -0.28 -13.20 6.66 99.48 0.66 -12.54 16 12 H -0.32 -15.64 7.11 99.48 0.71 -14.93 16 13 H -0.24 -10.51 7.11 99.48 0.71 -9.80 16 14 C 0.14 4.69 5.83 86.38 0.50 5.19 16 15 C 0.12 3.88 5.99 86.38 0.52 4.40 16 16 N -0.71 -17.19 5.46 -463.06 -2.53 -19.72 16 17 C 0.51 13.62 7.14 87.66 0.63 14.25 16 18 O -0.59 -21.98 15.77 -3.03 -0.05 -22.03 16 19 C -0.09 -1.64 2.47 -11.40 -0.03 -1.66 16 20 H 0.12 1.64 8.10 -2.39 -0.02 1.62 16 21 C -0.09 -1.81 4.65 30.73 0.14 -1.67 16 22 C -0.03 -0.55 6.30 30.01 0.19 -0.36 16 23 C 0.07 1.35 7.10 43.40 0.31 1.66 16 24 N -0.33 -6.65 12.68 -47.24 -0.60 -7.25 16 25 N -0.48 -6.37 7.37 -57.88 -0.43 -6.80 16 26 H 0.45 3.01 8.96 -213.19 -1.91 1.10 16 27 C 0.08 0.91 11.95 83.33 1.00 1.91 16 28 C -0.26 -4.15 5.89 -20.10 -0.12 -4.27 16 29 C -0.02 -0.37 5.40 30.04 0.16 -0.21 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.05 1.63 6.30 -2.39 -0.02 1.61 16 35 H 0.04 1.71 3.28 -2.38 -0.01 1.70 16 36 H 0.10 3.00 7.87 -2.39 -0.02 2.98 16 37 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 38 H 0.06 2.05 8.06 -2.39 -0.02 2.03 16 39 H 0.09 2.16 7.86 -2.39 -0.02 2.14 16 40 H 0.05 1.72 6.30 -2.39 -0.02 1.71 16 41 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.42 6.66 8.10 -92.70 -0.75 5.91 16 43 H 0.05 1.26 8.10 -2.39 -0.02 1.24 16 44 H 0.07 1.60 7.68 -2.39 -0.02 1.58 16 45 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.10 1.31 8.14 -2.38 -0.02 1.30 16 47 H 0.21 0.76 8.06 -2.91 -0.02 0.73 16 48 H 0.10 1.04 7.86 -2.39 -0.02 1.02 16 49 H 0.06 1.15 8.12 -2.39 -0.02 1.13 16 Total: -1.00 -84.54 391.14 0.40 -84.14 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -1.73 Total: 16.58 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: 6.67 Total: 15.93 kcal Atomic # 7 Polarization: -117.44 SS G_CDS: -4.70 Total: -122.14 kcal Atomic # 8 Polarization: -40.03 SS G_CDS: -1.56 Total: -41.60 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.72 Total: 47.09 kcal Total: -84.54 0.40 -84.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701003129.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.613 kcal (2) G-P(sol) polarization free energy of solvation -84.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds