Wall clock time and date at job start Tue Mar 31 2020 19:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42901 * 113.99864 * 2 1 4 4 C 1.52997 * 109.47170 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47103 * 64.99636 * 4 3 2 6 6 C 1.36938 * 120.00575 * 269.99970 * 5 4 3 7 7 H 1.07996 * 120.00441 * 145.92734 * 6 5 4 8 8 C 1.38815 * 119.99968 * 325.93770 * 6 5 4 9 9 N 1.31622 * 119.99393 * 337.09787 * 8 6 5 10 10 Si 1.86792 * 120.00255 * 157.09949 * 8 6 5 11 11 H 1.48506 * 109.47029 * 90.00047 * 10 8 6 12 12 H 1.48500 * 109.47047 * 209.99641 * 10 8 6 13 13 H 1.48492 * 109.47414 * 329.99849 * 10 8 6 14 14 C 1.46504 * 119.99777 * 90.00613 * 5 4 3 15 15 C 1.52992 * 109.47147 * 90.34067 * 14 5 4 16 16 N 1.46506 * 109.47070 * 179.97438 * 15 14 5 17 17 C 1.34774 * 120.00314 * 179.97438 * 16 15 14 18 18 O 1.21284 * 119.99603 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00171 * 180.02562 * 17 16 15 20 20 H 1.09005 * 109.42683 * 60.10836 * 19 17 16 21 21 C 1.53026 * 109.42933 * 180.02562 * 19 17 16 22 22 C 1.53374 * 109.74943 * 191.80703 * 21 19 17 23 23 C 1.50948 * 108.20399 * 309.35325 * 22 21 19 24 24 N 1.30127 * 128.28911 * 196.64820 * 23 22 21 25 25 N 1.40311 * 108.12769 * 179.86333 * 24 23 22 26 26 H 0.97000 * 126.00635 * 180.02562 * 25 24 23 27 27 C 1.35200 * 107.99008 * 0.03389 * 25 24 23 28 28 C 1.34568 * 107.61940 * 0.04832 * 27 25 24 29 29 C 1.50883 * 128.32835 * 179.70777 * 28 27 25 30 30 H 1.08997 * 109.47133 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46712 * 299.99543 * 1 2 3 32 32 H 1.08991 * 109.47470 * 59.99669 * 1 2 3 33 33 H 1.08999 * 109.47295 * 60.00573 * 3 2 1 34 34 H 1.09010 * 109.46842 * 300.00280 * 3 2 1 35 35 H 1.09000 * 109.47606 * 184.99932 * 4 3 2 36 36 H 1.08999 * 109.47012 * 305.00418 * 4 3 2 37 37 H 0.97004 * 119.99830 * 180.02562 * 9 8 6 38 38 H 1.09006 * 109.46643 * 210.34179 * 14 5 4 39 39 H 1.08995 * 109.46853 * 330.33993 * 14 5 4 40 40 H 1.08997 * 109.47546 * 299.99774 * 15 14 5 41 41 H 1.09006 * 109.47580 * 60.00597 * 15 14 5 42 42 H 0.97004 * 119.99633 * 0.02562 * 16 15 14 43 43 H 1.09003 * 109.42853 * 311.88925 * 21 19 17 44 44 H 1.09000 * 109.42573 * 71.72118 * 21 19 17 45 45 H 1.09002 * 109.71578 * 69.02726 * 22 21 19 46 46 H 1.08995 * 109.72137 * 189.67297 * 22 21 19 47 47 H 1.08000 * 126.18907 * 180.02562 * 27 25 24 48 48 H 1.09005 * 109.71525 * 77.06738 * 29 28 27 49 49 H 1.08994 * 109.71600 * 316.42112 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0968 -0.7970 -1.3369 7 1 3.8755 -1.3025 -2.2652 8 6 4.5040 -1.5274 -0.2289 9 7 5.1906 -0.9418 0.7292 10 14 4.0775 -3.3413 -0.0978 11 1 5.1580 -4.1498 -0.7177 12 1 3.9384 -3.7149 1.3327 13 1 2.7974 -3.6012 -0.8040 14 6 4.2865 1.4007 -2.4148 15 6 5.7684 1.7798 -2.3886 16 7 6.0793 2.6156 -3.5510 17 6 7.3338 3.0718 -3.7369 18 8 8.2054 2.7901 -2.9420 19 6 7.6534 3.9320 -4.9323 20 1 7.0470 4.8372 -4.9001 21 6 9.1359 4.3105 -4.9052 22 6 9.4083 5.4125 -5.9366 23 6 8.8250 4.9757 -7.2586 24 7 9.0745 5.4477 -8.4453 25 7 8.3023 4.7305 -9.3716 26 1 8.2885 4.8695 -10.3315 27 6 7.5808 3.8116 -8.6912 28 6 7.8825 3.9417 -7.3862 29 6 7.3408 3.1558 -6.2177 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.6887 1.8464 0.8900 34 1 1.6885 1.8464 -0.8901 35 1 3.9786 2.1766 0.0889 36 1 3.8515 0.5682 0.8409 37 1 5.4754 -1.4522 1.5034 38 1 4.0689 0.8479 -3.3288 39 1 3.6794 2.3054 -2.3841 40 1 5.9860 2.3325 -1.4747 41 1 6.3756 0.8750 -2.4194 42 1 5.3820 2.8412 -4.1865 43 1 9.3999 4.6713 -3.9111 44 1 9.7382 3.4339 -5.1436 45 1 8.9367 6.3413 -5.6156 46 1 10.4829 5.5618 -6.0402 47 1 6.8875 3.1018 -9.1177 48 1 7.8174 2.1761 -6.1808 49 1 6.2625 3.0370 -6.3227 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701003131.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:06 Heat of formation + Delta-G solvation = 5.692614 kcal Electronic energy + Delta-G solvation = -29033.194965 eV Core-core repulsion = 24997.395265 eV Total energy + Delta-G solvation = -4035.799700 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.69584 -39.53933 -37.26346 -36.31119 -35.62335 -34.06479 -32.47915 -31.31524 -30.66751 -29.70449 -28.82540 -27.10162 -25.65498 -24.84099 -23.82275 -22.68598 -21.80789 -21.22565 -20.22072 -19.76085 -18.92656 -17.86297 -16.95566 -16.58775 -15.73409 -15.60543 -15.51620 -15.06782 -14.94452 -14.55402 -14.52645 -14.02314 -13.98456 -13.88956 -13.51122 -13.45679 -13.13083 -12.94814 -12.88645 -12.49783 -12.02986 -11.89426 -11.79227 -11.67196 -11.16232 -11.10136 -10.97569 -10.90953 -10.76601 -10.64494 -10.49311 -10.42740 -10.09863 -9.91628 -9.70365 -9.60504 -9.39466 -8.82091 -8.65612 -8.51421 -8.38820 -6.59776 -5.69690 -3.22867 1.66465 2.50976 2.61330 2.98836 3.46395 3.53040 3.54614 3.61560 4.23157 4.53141 4.59468 4.70202 4.73916 4.76929 4.94936 5.08892 5.25659 5.31548 5.36770 5.43202 5.51072 5.54743 5.58039 5.74857 5.75393 5.80548 5.83071 5.94861 5.95740 6.04313 6.08135 6.09141 6.14610 6.23320 6.26253 6.34219 6.44588 6.60834 6.68763 6.81558 6.87578 7.03873 7.09430 7.44686 7.70423 7.89520 7.92701 8.08431 8.57646 8.63609 9.23242 9.88801 10.40403 11.32260 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016668 B = 0.002258 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.436315 B =12398.634147 C =12709.868475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.049 3.951 4 C 0.137 3.863 5 N -0.570 5.570 6 C -0.245 4.245 7 H 0.059 0.941 8 C 0.018 3.982 9 N -0.889 5.889 10 Si 0.900 3.100 11 H -0.291 1.291 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.139 3.861 15 C 0.097 3.903 16 N -0.725 5.725 17 C 0.510 3.490 18 O -0.540 6.540 19 C -0.104 4.104 20 H 0.096 0.904 21 C -0.097 4.097 22 C -0.039 4.039 23 C 0.086 3.914 24 N -0.293 5.293 25 N -0.487 5.487 26 H 0.438 0.562 27 C 0.062 3.938 28 C -0.232 4.232 29 C -0.031 4.031 30 H 0.074 0.926 31 H 0.026 0.974 32 H 0.028 0.972 33 H 0.025 0.975 34 H 0.026 0.974 35 H 0.040 0.960 36 H 0.110 0.890 37 H 0.254 0.746 38 H 0.048 0.952 39 H 0.036 0.964 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.393 0.607 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.177 0.823 48 H 0.077 0.923 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.126 12.466 -15.747 20.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C -0.030 4.030 4 C 0.011 3.989 5 N -0.290 5.290 6 C -0.374 4.374 7 H 0.077 0.923 8 C -0.181 4.181 9 N -0.532 5.532 10 Si 0.729 3.271 11 H -0.218 1.218 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.012 3.988 15 C -0.028 4.028 16 N -0.376 5.376 17 C 0.295 3.705 18 O -0.417 6.417 19 C -0.126 4.126 20 H 0.114 0.886 21 C -0.135 4.135 22 C -0.079 4.079 23 C -0.083 4.083 24 N -0.115 5.115 25 N -0.196 5.196 26 H 0.282 0.718 27 C -0.084 4.084 28 C -0.244 4.244 29 C -0.070 4.070 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.043 0.957 34 H 0.044 0.956 35 H 0.058 0.942 36 H 0.127 0.873 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.226 0.774 43 H 0.103 0.897 44 H 0.091 0.909 45 H 0.103 0.897 46 H 0.104 0.896 47 H 0.194 0.806 48 H 0.095 0.905 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.318 12.828 -15.656 20.283 hybrid contribution -1.422 -1.114 -0.367 1.843 sum -0.104 11.714 -16.023 19.848 Atomic orbital electron populations 1.22632 0.84351 1.01455 0.98351 1.88234 1.16450 1.27646 1.94798 1.23381 0.98781 0.84119 0.96756 1.21128 0.87591 0.96841 0.93375 1.43694 1.74434 1.02679 1.08173 1.18857 1.39151 0.81193 0.98239 0.92310 1.24969 0.96767 0.97751 0.98644 1.69943 1.36213 1.36057 1.10976 0.86362 0.78340 0.85480 0.76868 1.21792 1.21707 1.20368 1.21090 0.90904 0.94087 0.92762 1.22440 1.00188 0.93902 0.86253 1.46247 1.10161 1.52822 1.28394 1.20512 0.82735 0.80568 0.86694 1.90716 1.46575 1.58186 1.46226 1.21356 0.99002 0.99053 0.93151 0.88587 1.21385 0.94296 0.98596 0.99270 1.20196 1.00994 0.98975 0.87697 1.22447 0.96449 0.95256 0.94172 1.77003 1.16894 1.19027 0.98559 1.46320 1.35128 1.28628 1.09492 0.71827 1.22073 0.98261 0.95419 0.92612 1.20046 1.05867 1.04106 0.94344 1.19936 1.00514 0.97372 0.89128 0.90764 0.95567 0.95342 0.95692 0.95599 0.94182 0.87255 0.93645 0.93389 0.94523 0.92363 0.91057 0.77402 0.89684 0.90873 0.89670 0.89645 0.80593 0.90469 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.60 16 2 O -0.35 -7.70 10.18 -35.23 -0.36 -8.06 16 3 C 0.05 0.97 6.28 37.16 0.23 1.20 16 4 C 0.14 3.12 5.72 -4.04 -0.02 3.10 16 5 N -0.57 -13.49 2.43 -173.24 -0.42 -13.91 16 6 C -0.24 -6.54 8.99 -15.06 -0.14 -6.68 16 7 H 0.06 1.58 7.93 -52.49 -0.42 1.17 16 8 C 0.02 0.51 4.95 -17.43 -0.09 0.42 16 9 N -0.89 -25.57 11.32 55.49 0.63 -24.94 16 10 Si 0.90 22.22 29.61 -169.99 -5.03 17.19 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 14 C 0.14 2.65 5.78 -4.04 -0.02 2.63 16 15 C 0.10 1.87 6.00 -4.04 -0.02 1.84 16 16 N -0.73 -10.52 5.46 -60.29 -0.33 -10.85 16 17 C 0.51 7.72 7.14 -10.99 -0.08 7.64 16 18 O -0.54 -10.76 15.77 5.55 0.09 -10.67 16 19 C -0.10 -1.13 2.47 -91.56 -0.23 -1.36 16 20 H 0.10 0.90 8.10 -51.93 -0.42 0.48 16 21 C -0.10 -1.05 4.65 -26.52 -0.12 -1.18 16 22 C -0.04 -0.37 6.31 -27.57 -0.17 -0.54 16 23 C 0.09 0.93 7.10 -82.34 -0.58 0.34 16 24 N -0.29 -3.31 12.68 33.75 0.43 -2.89 16 25 N -0.49 -3.99 7.37 30.35 0.22 -3.77 16 26 H 0.44 2.11 8.96 -182.44 -1.64 0.48 16 27 C 0.06 0.48 11.95 -17.37 -0.21 0.28 16 28 C -0.23 -2.28 5.89 -104.98 -0.62 -2.89 16 29 C -0.03 -0.29 5.40 -27.60 -0.15 -0.44 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.03 0.48 8.14 -51.92 -0.42 0.05 16 35 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 36 H 0.11 2.90 5.32 -51.93 -0.28 2.63 16 37 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.05 0.89 8.04 -51.93 -0.42 0.47 16 39 H 0.04 0.61 8.07 -51.93 -0.42 0.20 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 42 H 0.39 4.33 8.10 -40.82 -0.33 4.00 16 43 H 0.08 0.99 7.68 -51.93 -0.40 0.59 16 44 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 48 H 0.08 0.82 8.12 -51.93 -0.42 0.39 16 49 H 0.08 0.59 7.86 -51.93 -0.41 0.19 16 LS Contribution 399.76 15.07 6.02 6.02 Total: -1.00 -34.82 399.76 -9.20 -44.02 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -9.35 Total: 1.90 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -1.11 Total: 5.96 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: 0.53 Total: -56.36 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.27 Total: -18.73 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.82 -9.20 -44.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701003131.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.717 kcal (2) G-P(sol) polarization free energy of solvation -34.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds