Wall clock time and date at job start Tue Mar 31 2020 19:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42901 * 113.99864 * 2 1 4 4 C 1.52997 * 109.47170 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47103 * 64.99636 * 4 3 2 6 6 C 1.36938 * 120.00575 * 269.99970 * 5 4 3 7 7 H 1.07996 * 120.00441 * 145.92734 * 6 5 4 8 8 C 1.38815 * 119.99968 * 325.93770 * 6 5 4 9 9 N 1.31622 * 119.99393 * 337.09787 * 8 6 5 10 10 Si 1.86792 * 120.00255 * 157.09949 * 8 6 5 11 11 H 1.48506 * 109.47029 * 90.00047 * 10 8 6 12 12 H 1.48500 * 109.47047 * 209.99641 * 10 8 6 13 13 H 1.48492 * 109.47414 * 329.99849 * 10 8 6 14 14 C 1.46504 * 119.99777 * 90.00613 * 5 4 3 15 15 C 1.52992 * 109.47147 * 90.34067 * 14 5 4 16 16 N 1.46506 * 109.47070 * 179.97438 * 15 14 5 17 17 C 1.34774 * 120.00314 * 179.97438 * 16 15 14 18 18 O 1.21284 * 119.99603 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00171 * 180.02562 * 17 16 15 20 20 H 1.09005 * 109.42683 * 60.10836 * 19 17 16 21 21 C 1.53026 * 109.42933 * 180.02562 * 19 17 16 22 22 C 1.53374 * 109.74943 * 191.80703 * 21 19 17 23 23 C 1.50948 * 108.20399 * 309.35325 * 22 21 19 24 24 N 1.30127 * 128.28911 * 196.64820 * 23 22 21 25 25 N 1.40311 * 108.12769 * 179.86333 * 24 23 22 26 26 H 0.97000 * 126.00635 * 180.02562 * 25 24 23 27 27 C 1.35200 * 107.99008 * 0.03389 * 25 24 23 28 28 C 1.34568 * 107.61940 * 0.04832 * 27 25 24 29 29 C 1.50883 * 128.32835 * 179.70777 * 28 27 25 30 30 H 1.08997 * 109.47133 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46712 * 299.99543 * 1 2 3 32 32 H 1.08991 * 109.47470 * 59.99669 * 1 2 3 33 33 H 1.08999 * 109.47295 * 60.00573 * 3 2 1 34 34 H 1.09010 * 109.46842 * 300.00280 * 3 2 1 35 35 H 1.09000 * 109.47606 * 184.99932 * 4 3 2 36 36 H 1.08999 * 109.47012 * 305.00418 * 4 3 2 37 37 H 0.97004 * 119.99830 * 180.02562 * 9 8 6 38 38 H 1.09006 * 109.46643 * 210.34179 * 14 5 4 39 39 H 1.08995 * 109.46853 * 330.33993 * 14 5 4 40 40 H 1.08997 * 109.47546 * 299.99774 * 15 14 5 41 41 H 1.09006 * 109.47580 * 60.00597 * 15 14 5 42 42 H 0.97004 * 119.99633 * 0.02562 * 16 15 14 43 43 H 1.09003 * 109.42853 * 311.88925 * 21 19 17 44 44 H 1.09000 * 109.42573 * 71.72118 * 21 19 17 45 45 H 1.09002 * 109.71578 * 69.02726 * 22 21 19 46 46 H 1.08995 * 109.72137 * 189.67297 * 22 21 19 47 47 H 1.08000 * 126.18907 * 180.02562 * 27 25 24 48 48 H 1.09005 * 109.71525 * 77.06738 * 29 28 27 49 49 H 1.08994 * 109.71600 * 316.42112 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0968 -0.7970 -1.3369 7 1 3.8755 -1.3025 -2.2652 8 6 4.5040 -1.5274 -0.2289 9 7 5.1906 -0.9418 0.7292 10 14 4.0775 -3.3413 -0.0978 11 1 5.1580 -4.1498 -0.7177 12 1 3.9384 -3.7149 1.3327 13 1 2.7974 -3.6012 -0.8040 14 6 4.2865 1.4007 -2.4148 15 6 5.7684 1.7798 -2.3886 16 7 6.0793 2.6156 -3.5510 17 6 7.3338 3.0718 -3.7369 18 8 8.2054 2.7901 -2.9420 19 6 7.6534 3.9320 -4.9323 20 1 7.0470 4.8372 -4.9001 21 6 9.1359 4.3105 -4.9052 22 6 9.4083 5.4125 -5.9366 23 6 8.8250 4.9757 -7.2586 24 7 9.0745 5.4477 -8.4453 25 7 8.3023 4.7305 -9.3716 26 1 8.2885 4.8695 -10.3315 27 6 7.5808 3.8116 -8.6912 28 6 7.8825 3.9417 -7.3862 29 6 7.3408 3.1558 -6.2177 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.6887 1.8464 0.8900 34 1 1.6885 1.8464 -0.8901 35 1 3.9786 2.1766 0.0889 36 1 3.8515 0.5682 0.8409 37 1 5.4754 -1.4522 1.5034 38 1 4.0689 0.8479 -3.3288 39 1 3.6794 2.3054 -2.3841 40 1 5.9860 2.3325 -1.4747 41 1 6.3756 0.8750 -2.4194 42 1 5.3820 2.8412 -4.1865 43 1 9.3999 4.6713 -3.9111 44 1 9.7382 3.4339 -5.1436 45 1 8.9367 6.3413 -5.6156 46 1 10.4829 5.5618 -6.0402 47 1 6.8875 3.1018 -9.1177 48 1 7.8174 2.1761 -6.1808 49 1 6.2625 3.0370 -6.3227 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701003131.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:05 Heat of formation + Delta-G solvation = -19.326563 kcal Electronic energy + Delta-G solvation = -29034.279878 eV Core-core repulsion = 24997.395265 eV Total energy + Delta-G solvation = -4036.884613 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.40151 -40.77356 -38.85228 -37.51806 -36.98037 -35.60768 -33.43817 -33.05864 -31.44069 -31.10458 -29.91307 -28.65654 -27.08476 -25.81655 -25.35770 -24.02149 -23.10345 -21.92315 -21.82591 -21.03828 -19.73541 -18.67192 -18.52038 -17.96182 -17.23133 -16.93918 -16.60976 -16.51902 -16.33301 -16.06070 -15.65230 -15.43575 -15.28429 -15.13389 -14.72754 -14.59819 -14.37879 -14.08220 -13.67353 -13.61959 -13.52109 -13.37718 -12.88457 -12.84586 -12.71579 -12.66179 -12.40062 -12.33695 -12.21550 -11.99319 -11.88746 -11.81971 -11.71624 -11.48320 -11.25662 -10.71427 -10.43461 -10.30896 -10.28488 -9.94901 -9.33003 -8.55080 -7.73592 -5.29013 1.01911 1.48283 1.51984 1.61251 1.74133 1.80419 2.05501 2.29872 2.62239 3.25782 3.40509 3.45100 3.72331 3.88280 3.90784 3.95245 4.17548 4.33798 4.35120 4.40830 4.45727 4.51057 4.57097 4.58521 4.66792 4.67317 4.74504 4.78190 4.81191 4.84524 4.87351 4.96976 4.98939 5.03563 5.06650 5.18671 5.19962 5.26753 5.33372 5.37281 5.61420 5.72578 5.75602 5.89052 6.49361 6.52900 6.71532 6.73069 6.77128 7.25287 7.42709 7.95584 8.42085 9.24188 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016668 B = 0.002258 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.436315 B =12398.634147 C =12709.868475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.058 3.942 4 C 0.133 3.867 5 N -0.586 5.586 6 C -0.239 4.239 7 H 0.055 0.945 8 C -0.031 4.031 9 N -0.920 5.920 10 Si 0.948 3.052 11 H -0.290 1.290 12 H -0.298 1.298 13 H -0.273 1.273 14 C 0.144 3.856 15 C 0.120 3.880 16 N -0.709 5.709 17 C 0.509 3.491 18 O -0.593 6.593 19 C -0.091 4.091 20 H 0.122 0.878 21 C -0.094 4.094 22 C -0.033 4.033 23 C 0.071 3.929 24 N -0.327 5.327 25 N -0.479 5.479 26 H 0.452 0.548 27 C 0.080 3.920 28 C -0.257 4.257 29 C -0.023 4.023 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.045 0.955 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.246 0.754 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.031 0.969 41 H 0.025 0.975 42 H 0.415 0.585 43 H 0.072 0.928 44 H 0.055 0.945 45 H 0.099 0.901 46 H 0.088 0.912 47 H 0.215 0.785 48 H 0.062 0.938 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.398 13.659 -18.311 22.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.021 4.021 4 C 0.007 3.993 5 N -0.306 5.306 6 C -0.369 4.369 7 H 0.073 0.927 8 C -0.228 4.228 9 N -0.565 5.565 10 Si 0.778 3.222 11 H -0.217 1.217 12 H -0.224 1.224 13 H -0.198 1.198 14 C 0.017 3.983 15 C -0.007 4.007 16 N -0.361 5.361 17 C 0.296 3.704 18 O -0.474 6.474 19 C -0.112 4.112 20 H 0.139 0.861 21 C -0.132 4.132 22 C -0.072 4.072 23 C -0.097 4.097 24 N -0.150 5.150 25 N -0.189 5.189 26 H 0.298 0.702 27 C -0.067 4.067 28 C -0.268 4.268 29 C -0.062 4.062 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.055 0.945 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.049 0.951 41 H 0.044 0.956 42 H 0.253 0.747 43 H 0.091 0.909 44 H 0.074 0.926 45 H 0.117 0.883 46 H 0.107 0.893 47 H 0.232 0.768 48 H 0.080 0.920 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.994 14.056 -18.288 23.087 hybrid contribution -0.737 -1.436 0.336 1.649 sum -1.731 12.620 -17.952 22.012 Atomic orbital electron populations 1.22816 0.81653 1.02526 1.00096 1.88153 1.19524 1.28778 1.95190 1.23177 0.96296 0.83990 0.98597 1.21050 0.90101 0.96337 0.91800 1.43876 1.74910 1.02326 1.09482 1.19028 1.37216 0.82981 0.97706 0.92718 1.25530 0.97615 1.00644 0.98982 1.70084 1.38072 1.36903 1.11441 0.85582 0.78102 0.82283 0.76227 1.21742 1.22434 1.19838 1.21174 0.90739 0.94923 0.91443 1.21848 0.99664 0.92251 0.86967 1.45948 1.10952 1.51763 1.27446 1.21317 0.81910 0.79995 0.87144 1.90701 1.48148 1.60141 1.48405 1.21324 0.99224 0.99076 0.91572 0.86052 1.21309 0.94232 0.98491 0.99180 1.20138 1.01423 0.98697 0.86936 1.22639 0.96875 0.95839 0.94351 1.76938 1.18395 1.20528 0.99177 1.46383 1.34359 1.28098 1.10076 0.70183 1.22635 0.97393 0.94748 0.91912 1.20134 1.06770 1.04646 0.95275 1.19873 1.01920 0.96243 0.88138 0.90178 0.93662 0.93593 0.93599 0.93685 0.93097 0.91187 0.94455 0.92214 0.91105 0.95061 0.95646 0.74740 0.90888 0.92628 0.88253 0.89319 0.76830 0.91956 0.88036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.02 16 2 O -0.40 -16.73 10.18 -148.98 -1.52 -18.25 16 3 C 0.06 2.18 6.28 71.98 0.45 2.64 16 4 C 0.13 6.04 5.72 86.38 0.49 6.54 16 5 N -0.59 -27.53 2.43 -702.01 -1.71 -29.24 16 6 C -0.24 -12.83 8.99 84.03 0.76 -12.07 16 7 H 0.06 2.94 7.93 -2.91 -0.02 2.91 16 8 C -0.03 -1.76 4.95 84.86 0.42 -1.34 16 9 N -0.92 -54.82 11.32 21.65 0.25 -54.57 16 10 Si 0.95 46.46 29.61 68.60 2.03 48.49 16 11 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 12 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 13 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 14 C 0.14 5.26 5.78 86.38 0.50 5.76 16 15 C 0.12 4.62 6.00 86.38 0.52 5.14 16 16 N -0.71 -19.68 5.46 -463.06 -2.53 -22.20 16 17 C 0.51 15.25 7.14 87.66 0.63 15.88 16 18 O -0.59 -24.54 15.77 -3.04 -0.05 -24.59 16 19 C -0.09 -1.84 2.47 -11.40 -0.03 -1.86 16 20 H 0.12 1.91 8.10 -2.38 -0.02 1.89 16 21 C -0.09 -2.02 4.65 30.73 0.14 -1.88 16 22 C -0.03 -0.59 6.31 30.05 0.19 -0.40 16 23 C 0.07 1.43 7.10 43.44 0.31 1.73 16 24 N -0.33 -6.88 12.68 -47.13 -0.60 -7.48 16 25 N -0.48 -6.59 7.37 -57.88 -0.43 -7.02 16 26 H 0.45 3.15 8.96 -213.18 -1.91 1.24 16 27 C 0.08 0.97 11.95 83.33 1.00 1.96 16 28 C -0.26 -4.39 5.89 -20.10 -0.12 -4.51 16 29 C -0.02 -0.39 5.40 30.03 0.16 -0.23 16 30 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.04 1.17 8.14 -2.39 -0.02 1.16 16 32 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.05 2.12 8.07 -2.39 -0.02 2.10 16 36 H 0.07 3.82 5.32 -2.39 -0.01 3.81 16 37 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 38 H 0.06 2.06 8.04 -2.38 -0.02 2.04 16 39 H 0.07 2.14 8.07 -2.39 -0.02 2.12 16 40 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.02 1.21 8.14 -2.38 -0.02 1.19 16 42 H 0.42 7.86 8.10 -92.71 -0.75 7.11 16 43 H 0.07 1.74 7.68 -2.39 -0.02 1.72 16 44 H 0.05 1.37 8.10 -2.39 -0.02 1.36 16 45 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.22 0.81 8.06 -2.91 -0.02 0.78 16 48 H 0.06 1.23 8.12 -2.38 -0.02 1.21 16 49 H 0.10 1.17 7.86 -2.39 -0.02 1.15 16 Total: -1.00 -79.41 399.76 0.42 -78.99 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -1.70 Total: 16.50 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: 6.67 Total: 19.37 kcal Atomic # 7 Polarization: -115.50 SS G_CDS: -5.01 Total: -120.51 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: -1.56 Total: -42.84 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -79.41 0.42 -78.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701003131.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.661 kcal (2) G-P(sol) polarization free energy of solvation -79.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds