Wall clock time and date at job start Tue Mar 31 2020 19:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 119.99846 * 2 1 4 4 H 1.48508 * 109.46900 * 239.99991 * 3 2 1 5 5 H 1.48498 * 109.46974 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47145 * 119.99965 * 3 2 1 7 7 C 1.38818 * 120.00220 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99821 * 197.01490 * 7 2 1 9 9 N 1.36939 * 119.99563 * 17.01921 * 7 2 1 10 10 C 1.47074 * 120.87631 * 206.58172 * 9 7 2 11 11 C 1.53240 * 108.52100 * 231.16514 * 10 9 7 12 12 N 1.46898 * 109.34173 * 306.17195 * 11 10 9 13 13 C 1.46901 * 111.00312 * 187.25749 * 12 11 10 14 14 C 1.52997 * 109.47196 * 170.00103 * 13 12 11 15 15 C 1.52998 * 109.47098 * 179.97438 * 14 13 12 16 16 N 1.46504 * 109.47330 * 179.97438 * 15 14 13 17 17 C 1.34772 * 120.00209 * 179.97438 * 16 15 14 18 18 O 1.21282 * 119.99957 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.00195 * 179.97438 * 17 16 15 20 20 C 1.52998 * 109.47317 * 180.02562 * 19 17 16 21 21 C 1.50698 * 109.47369 * 180.02562 * 20 19 17 22 22 C 1.35351 * 126.91321 * 274.96153 * 21 20 19 23 23 N 1.33766 * 106.50212 * 180.02562 * 22 21 20 24 24 N 1.28640 * 108.88474 * 359.97438 * 23 22 21 25 25 N 1.28722 * 110.17744 * 0.02562 * 24 23 22 26 26 H 0.96993 * 125.86841 * 180.02562 * 25 24 23 27 27 C 1.46894 * 111.26788 * 63.10199 * 12 11 10 28 28 C 1.47079 * 120.88185 * 26.56381 * 9 7 2 29 29 H 0.97001 * 120.00409 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.62907 * 111.45850 * 10 9 7 31 31 H 1.08998 * 109.79604 * 350.97316 * 10 9 7 32 32 H 1.09009 * 109.49306 * 186.21714 * 11 10 9 33 33 H 1.08996 * 109.49626 * 66.13277 * 11 10 9 34 34 H 1.09000 * 109.47307 * 49.99523 * 13 12 11 35 35 H 1.09006 * 109.46408 * 289.99897 * 13 12 11 36 36 H 1.09000 * 109.47466 * 59.99517 * 14 13 12 37 37 H 1.08996 * 109.46958 * 299.99968 * 14 13 12 38 38 H 1.09000 * 109.47070 * 59.99624 * 15 14 13 39 39 H 1.09009 * 109.47223 * 300.00091 * 15 14 13 40 40 H 0.96997 * 119.99655 * 0.02562 * 16 15 14 41 41 H 1.09008 * 109.47064 * 60.00590 * 19 17 16 42 42 H 1.08996 * 109.47095 * 300.00837 * 19 17 16 43 43 H 1.09000 * 109.47070 * 59.99926 * 20 19 17 44 44 H 1.09009 * 109.47223 * 300.00393 * 20 19 17 45 45 H 1.08002 * 126.74860 * 0.02562 * 22 21 20 46 46 H 1.09008 * 109.49003 * 56.85947 * 27 12 11 47 47 H 1.09006 * 109.49256 * 176.93494 * 27 12 11 48 48 H 1.08997 * 109.62563 * 248.54063 * 28 9 7 49 49 H 1.08992 * 109.62980 * 9.12526 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0548 -1.2224 0.2742 9 7 1.3705 -2.3623 -0.3461 10 6 1.8309 -3.6608 0.1685 11 6 2.0024 -4.6200 -1.0143 12 7 0.7548 -4.6656 -1.7885 13 6 0.8183 -5.7008 -2.8289 14 6 -0.5692 -5.8906 -3.4449 15 6 -0.5029 -6.9682 -4.5289 16 7 -1.8317 -7.1504 -5.1183 17 6 -2.0149 -8.0545 -6.1009 18 8 -1.0797 -8.7176 -6.4968 19 6 -3.3818 -8.2423 -6.7068 20 6 -3.3155 -9.3199 -7.7909 21 6 -4.6823 -9.5073 -8.3973 22 6 -5.6772 -10.2975 -7.9307 23 7 -6.7030 -10.1567 -8.7777 24 7 -6.3658 -9.3335 -9.7069 25 7 -5.1617 -8.9196 -9.5180 26 1 -4.6809 -8.2936 -10.0816 27 6 0.4401 -3.3537 -2.3695 28 6 0.2046 -2.3426 -1.2424 29 1 -0.4851 0.8400 0.0004 30 1 1.0920 -4.0628 0.8618 31 1 2.7849 -3.5376 0.6812 32 1 2.2364 -5.6177 -0.6425 33 1 2.8137 -4.2695 -1.6522 34 1 1.1514 -6.6400 -2.3871 35 1 1.5211 -5.3943 -3.6037 36 1 -0.9023 -4.9514 -3.8866 37 1 -1.2719 -6.1969 -2.6700 38 1 -0.1697 -7.9075 -4.0875 39 1 0.1998 -6.6615 -5.3037 40 1 -2.5795 -6.6198 -4.8019 41 1 -3.7160 -7.3031 -7.1477 42 1 -4.0837 -8.5499 -5.9317 43 1 -2.9814 -10.2590 -7.3498 44 1 -2.6134 -9.0127 -8.5662 45 1 -5.6486 -10.9193 -7.0482 46 1 1.2732 -3.0208 -2.9887 47 1 -0.4589 -3.4329 -2.9809 48 1 -0.6906 -2.6178 -0.6848 49 1 0.0841 -1.3450 -1.6646 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713070904.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:12 Heat of formation + Delta-G solvation = 77.547030 kcal Electronic energy + Delta-G solvation = -27718.154194 eV Core-core repulsion = 23717.763086 eV Total energy + Delta-G solvation = -4000.391108 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.77935 -40.11940 -38.33128 -36.04348 -34.93885 -34.42914 -33.64095 -32.17958 -30.89636 -30.10725 -29.96472 -27.11948 -25.67914 -24.15185 -23.43974 -22.94491 -22.45479 -22.06413 -21.26605 -20.39420 -19.13285 -18.77332 -17.44855 -16.89414 -16.58539 -16.38256 -16.18812 -15.48348 -15.13003 -14.81900 -14.74840 -14.41824 -14.31939 -13.95461 -13.68455 -13.62125 -13.44434 -13.06323 -12.99876 -12.90835 -12.29253 -12.17011 -11.88317 -11.86428 -11.63567 -11.36621 -11.31768 -11.07502 -11.06642 -10.93663 -10.74882 -10.48164 -10.33686 -10.28856 -10.06939 -9.76631 -9.66426 -9.61817 -9.39705 -8.53404 -7.87558 -6.69616 -5.81124 -3.22035 1.03334 2.07368 2.22534 2.24936 2.80625 3.35958 3.41743 3.42821 3.88227 4.11801 4.25171 4.26919 4.40174 4.47698 4.58394 4.68806 4.84640 4.90093 4.93072 5.01859 5.11413 5.35130 5.36251 5.37558 5.40156 5.43457 5.54796 5.64620 5.65378 5.84864 5.90286 5.97744 6.07378 6.12062 6.16361 6.20395 6.31060 6.31900 6.51020 6.65684 6.90115 7.11517 7.21175 7.56024 7.60202 7.66816 7.78645 7.83078 7.96711 8.40630 9.18549 9.81940 10.40362 11.27767 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.021582 B = 0.001522 C = 0.001458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.043344 B =18387.842135 C =19201.364590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.253 4.253 8 H 0.065 0.935 9 N -0.595 5.595 10 C 0.148 3.852 11 C 0.045 3.955 12 N -0.533 5.533 13 C 0.058 3.942 14 C -0.128 4.128 15 C 0.120 3.880 16 N -0.727 5.727 17 C 0.512 3.488 18 O -0.542 6.542 19 C -0.138 4.138 20 C -0.032 4.032 21 C -0.009 4.009 22 C -0.045 4.045 23 N -0.265 5.265 24 N -0.082 5.082 25 N -0.389 5.389 26 H 0.448 0.552 27 C 0.033 3.967 28 C 0.178 3.822 29 H 0.254 0.746 30 H 0.025 0.975 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.027 0.973 34 H 0.070 0.930 35 H 0.028 0.972 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.403 0.597 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.087 0.913 45 H 0.192 0.808 46 H 0.024 0.976 47 H 0.061 0.939 48 H 0.026 0.974 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.919 -18.054 -15.234 24.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.319 5.319 10 C 0.022 3.978 11 C -0.085 4.085 12 N -0.258 5.258 13 C -0.071 4.071 14 C -0.166 4.166 15 C -0.004 4.004 16 N -0.379 5.379 17 C 0.298 3.702 18 O -0.420 6.420 19 C -0.179 4.179 20 C -0.072 4.072 21 C -0.143 4.143 22 C -0.202 4.202 23 N -0.132 5.132 24 N -0.062 5.062 25 N -0.110 5.110 26 H 0.294 0.706 27 C -0.096 4.096 28 C 0.052 3.948 29 H 0.064 0.936 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.088 0.912 35 H 0.046 0.954 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.238 0.762 41 H 0.113 0.887 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.106 0.894 45 H 0.209 0.791 46 H 0.042 0.958 47 H 0.080 0.920 48 H 0.044 0.956 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.061 -18.501 -15.997 25.752 hybrid contribution 1.965 1.763 -0.057 2.640 sum -6.096 -16.738 -16.053 23.980 Atomic orbital electron populations 1.70014 1.05202 1.25581 1.54063 1.25015 0.95308 0.98331 1.01031 0.86365 0.78901 0.83369 0.78109 1.21143 1.21607 1.20859 1.19165 0.92589 0.84823 1.41678 0.91689 1.44105 1.34137 1.01250 1.52363 1.20973 0.97794 0.86480 0.92592 1.22615 0.89524 0.99422 0.96902 1.61949 1.34432 1.05827 1.23595 1.21939 0.95051 0.96345 0.93731 1.21801 0.99177 0.98297 0.97373 1.21373 0.83688 0.99484 0.95847 1.46051 1.12600 1.40841 1.38374 1.20509 0.90595 0.79516 0.79549 1.90734 1.43489 1.46259 1.61498 1.21676 0.95652 1.00959 0.99636 1.19870 0.88741 1.01102 0.97526 1.22325 0.99786 1.00716 0.91439 1.23490 0.89975 1.03829 1.02925 1.75136 1.25168 1.11742 1.01192 1.78336 0.95907 1.11572 1.20391 1.45179 1.12093 1.33490 1.20242 0.70639 1.22956 0.98619 0.89432 0.98613 1.20860 0.88960 0.96557 0.88436 0.93575 0.95684 0.92623 0.92013 0.95442 0.91174 0.95359 0.91012 0.90315 0.91297 0.91542 0.76235 0.88724 0.87878 0.87656 0.89418 0.79090 0.95795 0.92036 0.95620 0.89423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.88 11.15 55.49 0.62 -25.26 16 2 C 0.00 0.04 4.94 -17.43 -0.09 -0.04 16 3 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.25 -6.90 9.64 -15.06 -0.15 -7.04 16 8 H 0.07 1.74 7.88 -52.49 -0.41 1.32 16 9 N -0.60 -14.86 3.04 -172.02 -0.52 -15.38 16 10 C 0.15 3.10 6.69 -3.60 -0.02 3.07 16 11 C 0.04 0.78 5.62 -3.70 -0.02 0.76 16 12 N -0.53 -8.87 4.63 -234.31 -1.08 -9.96 16 13 C 0.06 0.74 4.96 -3.82 -0.02 0.72 16 14 C -0.13 -1.29 5.26 -26.73 -0.14 -1.43 16 15 C 0.12 1.07 5.67 -4.04 -0.02 1.05 16 16 N -0.73 -5.19 5.56 -60.29 -0.33 -5.52 16 17 C 0.51 3.93 7.83 -10.99 -0.09 3.85 16 18 O -0.54 -6.29 15.98 5.56 0.09 -6.21 16 19 C -0.14 -0.55 5.68 -27.89 -0.16 -0.71 16 20 C -0.03 -0.14 5.07 -27.89 -0.14 -0.28 16 21 C -0.01 -0.05 6.56 -82.09 -0.54 -0.58 16 22 C -0.04 -0.31 11.99 -17.74 -0.21 -0.52 16 23 N -0.27 -2.66 12.41 30.23 0.38 -2.28 16 24 N -0.08 -0.75 13.38 60.35 0.81 0.06 16 25 N -0.39 -2.13 6.98 33.54 0.23 -1.89 16 26 H 0.45 0.89 8.96 -190.40 -1.71 -0.82 16 27 C 0.03 0.61 5.46 -3.70 -0.02 0.59 16 28 C 0.18 4.18 5.42 -3.60 -0.02 4.16 16 29 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 1.12 7.96 -51.93 -0.41 0.70 16 32 H 0.06 0.91 7.99 -51.92 -0.41 0.50 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.81 7.97 -51.93 -0.41 0.40 16 35 H 0.03 0.37 8.12 -51.93 -0.42 -0.06 16 36 H 0.07 0.75 6.40 -51.93 -0.33 0.42 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 40 H 0.40 1.99 8.47 -40.82 -0.35 1.64 16 41 H 0.09 0.26 8.14 -51.92 -0.42 -0.16 16 42 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.11 0.47 8.10 -51.93 -0.42 0.05 16 44 H 0.09 0.37 8.10 -51.92 -0.42 -0.05 16 45 H 0.19 0.76 8.06 -52.49 -0.42 0.34 16 46 H 0.02 0.47 8.14 -51.92 -0.42 0.04 16 47 H 0.06 1.00 6.16 -51.93 -0.32 0.68 16 48 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.09 2.29 6.12 -51.93 -0.32 1.97 16 LS Contribution 396.70 15.07 5.98 5.98 Total: -1.00 -34.94 396.70 -9.81 -44.75 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -9.30 Total: -4.26 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -1.64 Total: 3.59 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: 0.09 Total: -60.24 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: 0.09 Total: -6.21 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.94 -9.81 -44.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713070904.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.296 kcal (2) G-P(sol) polarization free energy of solvation -34.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds