Wall clock time and date at job start Tue Mar 31 2020 19:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 119.99846 * 2 1 4 4 H 1.48508 * 109.46900 * 239.99991 * 3 2 1 5 5 H 1.48498 * 109.46974 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47145 * 119.99965 * 3 2 1 7 7 C 1.38818 * 120.00220 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99821 * 197.01490 * 7 2 1 9 9 N 1.36939 * 119.99563 * 17.01921 * 7 2 1 10 10 C 1.47074 * 120.87631 * 206.58172 * 9 7 2 11 11 C 1.53240 * 108.52100 * 231.16514 * 10 9 7 12 12 N 1.46898 * 109.34173 * 306.17195 * 11 10 9 13 13 C 1.46901 * 111.00312 * 187.25749 * 12 11 10 14 14 C 1.52997 * 109.47196 * 170.00103 * 13 12 11 15 15 C 1.52998 * 109.47098 * 179.97438 * 14 13 12 16 16 N 1.46504 * 109.47330 * 179.97438 * 15 14 13 17 17 C 1.34772 * 120.00209 * 179.97438 * 16 15 14 18 18 O 1.21282 * 119.99957 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.00195 * 179.97438 * 17 16 15 20 20 C 1.52998 * 109.47317 * 180.02562 * 19 17 16 21 21 C 1.50698 * 109.47369 * 180.02562 * 20 19 17 22 22 C 1.35351 * 126.91321 * 274.96153 * 21 20 19 23 23 N 1.33766 * 106.50212 * 180.02562 * 22 21 20 24 24 N 1.28640 * 108.88474 * 359.97438 * 23 22 21 25 25 N 1.28722 * 110.17744 * 0.02562 * 24 23 22 26 26 H 0.96993 * 125.86841 * 180.02562 * 25 24 23 27 27 C 1.46894 * 111.26788 * 63.10199 * 12 11 10 28 28 C 1.47079 * 120.88185 * 26.56381 * 9 7 2 29 29 H 0.97001 * 120.00409 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.62907 * 111.45850 * 10 9 7 31 31 H 1.08998 * 109.79604 * 350.97316 * 10 9 7 32 32 H 1.09009 * 109.49306 * 186.21714 * 11 10 9 33 33 H 1.08996 * 109.49626 * 66.13277 * 11 10 9 34 34 H 1.09000 * 109.47307 * 49.99523 * 13 12 11 35 35 H 1.09006 * 109.46408 * 289.99897 * 13 12 11 36 36 H 1.09000 * 109.47466 * 59.99517 * 14 13 12 37 37 H 1.08996 * 109.46958 * 299.99968 * 14 13 12 38 38 H 1.09000 * 109.47070 * 59.99624 * 15 14 13 39 39 H 1.09009 * 109.47223 * 300.00091 * 15 14 13 40 40 H 0.96997 * 119.99655 * 0.02562 * 16 15 14 41 41 H 1.09008 * 109.47064 * 60.00590 * 19 17 16 42 42 H 1.08996 * 109.47095 * 300.00837 * 19 17 16 43 43 H 1.09000 * 109.47070 * 59.99926 * 20 19 17 44 44 H 1.09009 * 109.47223 * 300.00393 * 20 19 17 45 45 H 1.08002 * 126.74860 * 0.02562 * 22 21 20 46 46 H 1.09008 * 109.49003 * 56.85947 * 27 12 11 47 47 H 1.09006 * 109.49256 * 176.93494 * 27 12 11 48 48 H 1.08997 * 109.62563 * 248.54063 * 28 9 7 49 49 H 1.08992 * 109.62980 * 9.12526 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0548 -1.2224 0.2742 9 7 1.3705 -2.3623 -0.3461 10 6 1.8309 -3.6608 0.1685 11 6 2.0024 -4.6200 -1.0143 12 7 0.7548 -4.6656 -1.7885 13 6 0.8183 -5.7008 -2.8289 14 6 -0.5692 -5.8906 -3.4449 15 6 -0.5029 -6.9682 -4.5289 16 7 -1.8317 -7.1504 -5.1183 17 6 -2.0149 -8.0545 -6.1009 18 8 -1.0797 -8.7176 -6.4968 19 6 -3.3818 -8.2423 -6.7068 20 6 -3.3155 -9.3199 -7.7909 21 6 -4.6823 -9.5073 -8.3973 22 6 -5.6772 -10.2975 -7.9307 23 7 -6.7030 -10.1567 -8.7777 24 7 -6.3658 -9.3335 -9.7069 25 7 -5.1617 -8.9196 -9.5180 26 1 -4.6809 -8.2936 -10.0816 27 6 0.4401 -3.3537 -2.3695 28 6 0.2046 -2.3426 -1.2424 29 1 -0.4851 0.8400 0.0004 30 1 1.0920 -4.0628 0.8618 31 1 2.7849 -3.5376 0.6812 32 1 2.2364 -5.6177 -0.6425 33 1 2.8137 -4.2695 -1.6522 34 1 1.1514 -6.6400 -2.3871 35 1 1.5211 -5.3943 -3.6037 36 1 -0.9023 -4.9514 -3.8866 37 1 -1.2719 -6.1969 -2.6700 38 1 -0.1697 -7.9075 -4.0875 39 1 0.1998 -6.6615 -5.3037 40 1 -2.5795 -6.6198 -4.8019 41 1 -3.7160 -7.3031 -7.1477 42 1 -4.0837 -8.5499 -5.9317 43 1 -2.9814 -10.2590 -7.3498 44 1 -2.6134 -9.0127 -8.5662 45 1 -5.6486 -10.9193 -7.0482 46 1 1.2732 -3.0208 -2.9887 47 1 -0.4589 -3.4329 -2.9809 48 1 -0.6906 -2.6178 -0.6848 49 1 0.0841 -1.3450 -1.6646 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713070904.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:11 Heat of formation + Delta-G solvation = 50.595283 kcal Electronic energy + Delta-G solvation = -27719.322909 eV Core-core repulsion = 23717.763086 eV Total energy + Delta-G solvation = -4001.559823 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -44.28768 -40.74904 -39.75592 -37.08064 -35.84021 -35.38809 -34.14956 -33.64609 -32.09861 -31.62512 -30.81871 -28.52176 -26.60905 -25.32038 -24.40089 -24.02141 -23.86253 -22.57674 -22.18320 -21.10216 -20.78945 -19.23341 -18.73148 -18.00525 -17.29009 -17.04699 -16.97626 -16.70970 -16.22114 -16.03772 -15.60098 -15.36635 -15.28554 -15.22742 -15.19652 -14.83272 -14.62791 -14.20150 -14.12874 -13.39641 -13.29452 -13.27332 -12.92918 -12.79177 -12.71609 -12.59784 -12.50932 -12.33043 -12.28049 -12.07803 -11.94161 -11.78582 -11.75761 -11.59633 -11.48154 -11.30600 -10.93489 -10.57884 -10.14912 -10.05168 -9.25051 -8.67336 -7.87849 -5.32019 0.56125 1.46641 1.48475 1.53743 1.55491 1.68078 1.86108 2.25082 2.50707 3.02975 3.27525 3.47184 3.69498 3.70133 3.89529 3.97864 4.02977 4.07395 4.16368 4.24594 4.31634 4.36428 4.41080 4.49312 4.52296 4.63676 4.64885 4.67004 4.69512 4.72661 4.83984 4.91081 5.02564 5.04792 5.06693 5.18029 5.21864 5.23633 5.29761 5.39165 5.49466 5.60971 5.69819 5.98613 6.19946 6.30818 6.37868 6.58995 7.13823 7.28552 7.43596 7.84746 8.38392 9.18714 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.021582 B = 0.001522 C = 0.001458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.043344 B =18387.842135 C =19201.364590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.050 4.050 3 Si 0.968 3.032 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.267 4.267 8 H 0.066 0.934 9 N -0.615 5.615 10 C 0.143 3.857 11 C 0.055 3.945 12 N -0.541 5.541 13 C 0.059 3.941 14 C -0.115 4.115 15 C 0.129 3.871 16 N -0.722 5.722 17 C 0.512 3.488 18 O -0.585 6.585 19 C -0.129 4.129 20 C -0.025 4.025 21 C 0.009 3.991 22 C -0.055 4.055 23 N -0.305 5.305 24 N -0.114 5.114 25 N -0.375 5.375 26 H 0.462 0.538 27 C 0.051 3.949 28 C 0.184 3.816 29 H 0.251 0.749 30 H 0.017 0.983 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.021 0.979 34 H 0.087 0.913 35 H 0.029 0.971 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.416 0.584 41 H 0.113 0.887 42 H 0.122 0.878 43 H 0.105 0.895 44 H 0.089 0.911 45 H 0.214 0.786 46 H 0.014 0.986 47 H 0.087 0.913 48 H 0.000 1.000 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.414 -18.991 -15.808 25.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.245 4.245 3 Si 0.795 3.205 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.397 4.397 8 H 0.084 0.916 9 N -0.339 5.339 10 C 0.017 3.983 11 C -0.075 4.075 12 N -0.266 5.266 13 C -0.069 4.069 14 C -0.154 4.154 15 C 0.004 3.996 16 N -0.374 5.374 17 C 0.300 3.700 18 O -0.465 6.465 19 C -0.170 4.170 20 C -0.065 4.065 21 C -0.126 4.126 22 C -0.212 4.212 23 N -0.171 5.171 24 N -0.094 5.094 25 N -0.098 5.098 26 H 0.310 0.690 27 C -0.079 4.079 28 C 0.058 3.942 29 H 0.060 0.940 30 H 0.035 0.965 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.039 0.961 34 H 0.105 0.895 35 H 0.047 0.953 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.252 0.748 41 H 0.131 0.869 42 H 0.140 0.860 43 H 0.123 0.877 44 H 0.108 0.892 45 H 0.231 0.769 46 H 0.032 0.968 47 H 0.105 0.895 48 H 0.018 0.982 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.570 -19.444 -16.588 26.656 hybrid contribution 1.863 2.001 0.185 2.740 sum -5.707 -17.443 -16.403 24.615 Atomic orbital electron populations 1.70171 1.06567 1.25934 1.55359 1.25765 0.96084 1.01378 1.01284 0.85344 0.77579 0.79256 0.78273 1.20573 1.21884 1.20137 1.19504 0.92899 0.86112 1.41190 0.91640 1.44400 1.34308 1.02105 1.53119 1.21134 0.97418 0.85596 0.94165 1.22459 0.89627 0.99941 0.95425 1.61897 1.34154 1.05486 1.25017 1.22037 0.96730 0.95405 0.92777 1.21647 0.97625 0.98547 0.97536 1.21147 0.84526 0.98753 0.95175 1.45995 1.12360 1.40870 1.38140 1.21078 0.91403 0.78576 0.78988 1.90723 1.45153 1.47842 1.62794 1.21664 0.93600 1.01783 0.99904 1.19836 0.87789 1.01292 0.97610 1.22421 0.99686 0.99691 0.90829 1.23982 0.89581 1.04317 1.03362 1.75093 1.26901 1.12813 1.02288 1.78276 0.97434 1.12665 1.21038 1.45211 1.11301 1.33038 1.20284 0.68964 1.22618 0.99457 0.89331 0.96464 1.20643 0.87794 0.96425 0.89326 0.94028 0.96527 0.92326 0.88656 0.96077 0.89476 0.95283 0.91238 0.90017 0.91642 0.92489 0.74757 0.86870 0.85950 0.87686 0.89233 0.76901 0.96798 0.89461 0.98209 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.84 11.15 21.65 0.24 -54.59 16 2 C -0.05 -2.76 4.94 84.86 0.42 -2.34 16 3 Si 0.97 44.48 29.59 68.60 2.03 46.51 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.27 -14.74 9.64 84.03 0.81 -13.93 16 8 H 0.07 3.52 7.88 -2.91 -0.02 3.49 16 9 N -0.62 -31.11 3.04 -698.14 -2.12 -33.23 16 10 C 0.14 5.90 6.69 86.35 0.58 6.47 16 11 C 0.05 1.79 5.62 86.38 0.49 2.28 16 12 N -0.54 -16.93 4.63 -895.23 -4.14 -21.08 16 13 C 0.06 1.31 4.96 86.30 0.43 1.74 16 14 C -0.12 -2.00 5.26 30.59 0.16 -1.84 16 15 C 0.13 1.99 5.67 86.38 0.49 2.48 16 16 N -0.72 -8.38 5.56 -463.05 -2.57 -10.95 16 17 C 0.51 6.62 7.83 87.66 0.69 7.30 16 18 O -0.58 -12.62 15.98 -3.03 -0.05 -12.67 16 19 C -0.13 -0.63 5.68 29.85 0.17 -0.46 16 20 C -0.03 -0.15 5.07 29.85 0.15 0.00 16 21 C 0.01 0.08 6.56 41.35 0.27 0.35 16 22 C -0.05 -0.66 11.99 83.73 1.00 0.34 16 23 N -0.30 -5.96 12.41 -58.26 -0.72 -6.69 16 24 N -0.11 -2.04 13.38 37.02 0.50 -1.54 16 25 N -0.38 -3.57 6.98 -47.79 -0.33 -3.91 16 26 H 0.46 1.09 8.96 -219.96 -1.97 -0.88 16 27 C 0.05 1.83 5.46 86.39 0.47 2.30 16 28 C 0.18 8.82 5.42 86.35 0.47 9.29 16 29 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 30 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.06 2.33 7.96 -2.39 -0.02 2.31 16 32 H 0.10 2.50 7.99 -2.38 -0.02 2.48 16 33 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.09 1.70 7.97 -2.39 -0.02 1.68 16 35 H 0.03 0.67 8.12 -2.38 -0.02 0.65 16 36 H 0.07 1.26 6.40 -2.39 -0.02 1.24 16 37 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.42 2.80 8.47 -92.71 -0.79 2.02 16 41 H 0.11 0.20 8.14 -2.38 -0.02 0.18 16 42 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 43 H 0.10 0.70 8.10 -2.39 -0.02 0.68 16 44 H 0.09 0.55 8.10 -2.38 -0.02 0.53 16 45 H 0.21 1.28 8.06 -2.91 -0.02 1.26 16 46 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 47 H 0.09 2.68 6.16 -2.38 -0.01 2.67 16 48 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 49 H 0.06 2.98 6.12 -2.39 -0.01 2.97 16 Total: -1.00 -77.63 396.70 -2.37 -80.00 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -1.79 Total: 4.15 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: 6.59 Total: 13.99 kcal Atomic # 7 Polarization: -122.83 SS G_CDS: -9.16 Total: -131.99 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -0.05 Total: -12.67 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -77.63 -2.37 -80.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713070904.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.600 kcal (2) G-P(sol) polarization free energy of solvation -77.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds