Wall clock time and date at job start Tue Mar 31 2020 19:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 114.00609 * 2 1 4 4 C 1.52991 * 109.47152 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47270 * 180.02562 * 4 3 2 6 6 C 1.35032 * 124.88916 * 125.27653 * 5 4 3 7 7 C 1.35361 * 107.23380 * 180.17303 * 6 5 4 8 8 C 1.41504 * 105.49981 * 359.59187 * 7 6 5 9 9 C 1.47715 * 126.52154 * 180.24230 * 8 7 6 10 10 O 1.21575 * 119.99406 * 7.05568 * 9 8 7 11 11 N 1.34772 * 120.00518 * 187.05450 * 9 8 7 12 12 C 1.46933 * 120.62555 * 6.73836 * 11 9 8 13 13 C 1.53627 * 108.54084 * 126.36808 * 12 11 9 14 14 C 1.53042 * 109.24171 * 54.85465 * 13 12 11 15 15 C 1.53041 * 109.53552 * 298.50683 * 14 13 12 16 16 H 1.08997 * 109.49775 * 301.41494 * 15 14 13 17 17 C 1.52999 * 109.52208 * 181.33313 * 15 14 13 18 18 N 1.46498 * 109.47372 * 175.14687 * 17 15 14 19 19 C 1.36932 * 120.00270 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00055 * 0.02562 * 19 18 17 21 21 C 1.38814 * 120.00006 * 179.97438 * 19 18 17 22 22 N 1.31621 * 120.00034 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00001 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47513 * 89.99723 * 23 21 19 25 25 H 1.48504 * 109.46752 * 209.99742 * 23 21 19 26 26 H 1.48507 * 109.46919 * 329.99252 * 23 21 19 27 27 C 1.46917 * 120.63203 * 187.01489 * 11 9 8 28 28 N 1.28477 * 124.88161 * 304.98390 * 5 4 3 29 29 H 1.09001 * 109.46565 * 299.99668 * 1 2 3 30 30 H 1.08997 * 109.46544 * 59.99365 * 1 2 3 31 31 H 1.08991 * 109.47118 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46609 * 60.00047 * 3 2 1 33 33 H 1.08994 * 109.46710 * 300.00487 * 3 2 1 34 34 H 1.09003 * 109.47251 * 60.00531 * 4 3 2 35 35 H 1.09004 * 109.47759 * 300.00089 * 4 3 2 36 36 H 1.08005 * 126.38302 * 0.02606 * 6 5 4 37 37 H 1.07995 * 127.25397 * 179.85626 * 7 6 5 38 38 H 1.09000 * 109.58166 * 246.19770 * 12 11 9 39 39 H 1.08997 * 109.58820 * 6.62178 * 12 11 9 40 40 H 1.08995 * 109.63349 * 294.86159 * 13 12 11 41 41 H 1.09002 * 109.42753 * 174.71901 * 13 12 11 42 42 H 1.08999 * 109.45906 * 178.48852 * 14 13 12 43 43 H 1.08996 * 109.44851 * 58.52509 * 14 13 12 44 44 H 1.08999 * 109.47252 * 295.15100 * 17 15 14 45 45 H 1.09004 * 109.47241 * 55.14740 * 17 15 14 46 46 H 0.97001 * 119.99604 * 0.02562 * 18 17 15 47 47 H 0.96995 * 120.00046 * 179.97438 * 22 21 19 48 48 H 1.08998 * 109.58879 * 353.37577 * 27 11 9 49 49 H 1.08997 * 109.58831 * 113.65874 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5355 1.1844 0.0006 5 7 4.1316 2.5227 0.0013 6 6 5.0297 2.9678 0.9060 7 6 5.3352 4.2439 0.5736 8 6 4.5736 4.5254 -0.5853 9 6 4.5594 5.7945 -1.3411 10 8 5.3428 6.6798 -1.0571 11 7 3.6781 5.9710 -2.3453 12 6 2.6302 4.9744 -2.6055 13 6 1.2697 5.6878 -2.6175 14 6 1.3107 6.8351 -3.6295 15 6 2.3809 7.8467 -3.2132 16 1 2.1565 8.2239 -2.2155 17 6 2.3989 9.0101 -4.2068 18 7 3.3411 10.0323 -3.7449 19 6 3.5262 11.1741 -4.4778 20 1 2.9773 11.3212 -5.3962 21 6 4.4186 12.1430 -4.0398 22 7 4.5969 13.2402 -4.7445 23 14 5.3676 11.8888 -2.4510 24 1 6.6481 11.1966 -2.7445 25 1 5.6490 13.2064 -1.8264 26 1 4.5599 11.0616 -1.5190 27 6 3.7506 7.1606 -3.2045 28 7 3.8789 3.4400 -0.8621 29 1 -0.3632 0.5138 0.8901 30 1 -0.3632 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6888 1.8463 0.8900 33 1 1.6887 1.8463 -0.8899 34 1 3.8575 0.6434 -0.8892 35 1 3.8569 0.6436 0.8908 36 1 5.4282 2.4103 1.7408 37 1 6.0196 4.9062 1.0828 38 1 2.8069 4.5023 -3.5719 39 1 2.6414 4.2189 -1.8199 40 1 1.0558 6.0853 -1.6254 41 1 0.4914 4.9795 -2.9018 42 1 0.3385 7.3269 -3.6604 43 1 1.5491 6.4397 -4.6169 44 1 2.7088 8.6464 -5.1865 45 1 1.4007 9.4420 -4.2787 46 1 3.8339 9.9003 -2.9199 47 1 5.2202 13.9174 -4.4383 48 1 4.5011 7.8480 -2.8142 49 1 4.0192 6.8634 -4.2181 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713235913.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:44 Heat of formation + Delta-G solvation = 27.687694 kcal Electronic energy + Delta-G solvation = -29556.193093 eV Core-core repulsion = 25521.347171 eV Total energy + Delta-G solvation = -4034.845922 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.03092 -39.89872 -38.59368 -37.54194 -35.06175 -34.38554 -32.90472 -31.69393 -31.12266 -30.28008 -29.73574 -27.10153 -26.00424 -25.60614 -24.09201 -22.86815 -22.33520 -21.67032 -21.07497 -20.20323 -19.23885 -17.87093 -17.54395 -17.12773 -16.77572 -16.56327 -16.25857 -15.74395 -15.40304 -14.87624 -14.66142 -14.54738 -14.35110 -14.09002 -13.89846 -13.69233 -13.38850 -13.24484 -13.00690 -12.86796 -12.60514 -12.53820 -12.34426 -12.24395 -11.98091 -11.74249 -11.43722 -11.15505 -10.90218 -10.73303 -10.54407 -10.38093 -10.31388 -10.19480 -10.02752 -9.85008 -9.52391 -9.47273 -9.36761 -8.80697 -8.48585 -7.13881 -5.68181 -3.03359 1.31502 1.83411 1.90119 3.00362 3.21337 3.38493 3.50969 3.56198 3.59500 3.91739 4.20532 4.30911 4.45526 4.54256 4.67452 4.70430 4.74729 4.78824 4.86456 4.97175 4.98534 5.02920 5.09827 5.11393 5.19373 5.35962 5.38601 5.44663 5.60638 5.63452 5.68354 5.75477 5.85933 5.94164 5.97501 6.09513 6.11495 6.16357 6.34150 6.38122 6.41130 6.44011 6.68378 6.75284 6.84048 7.41724 7.62009 8.07752 8.24004 8.50916 9.30372 10.03381 10.22988 11.50048 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017592 B = 0.002683 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.254083 B =10431.699257 C =11747.538004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.049 3.951 4 C 0.124 3.876 5 N -0.288 5.288 6 C -0.012 4.012 7 C -0.177 4.177 8 C -0.001 4.001 9 C 0.596 3.404 10 O -0.527 6.527 11 N -0.598 5.598 12 C 0.087 3.913 13 C -0.132 4.132 14 C -0.112 4.112 15 C -0.110 4.110 16 H 0.073 0.927 17 C 0.165 3.835 18 N -0.757 5.757 19 C -0.243 4.243 20 H 0.090 0.910 21 C 0.005 3.995 22 N -0.935 5.935 23 Si 0.882 3.118 24 H -0.282 1.282 25 H -0.292 1.292 26 H -0.275 1.275 27 C 0.119 3.881 28 N -0.263 5.263 29 H 0.044 0.956 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.183 0.817 37 H 0.165 0.835 38 H 0.064 0.936 39 H 0.121 0.879 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.029 0.971 45 H 0.030 0.970 46 H 0.362 0.638 47 H 0.259 0.741 48 H 0.097 0.903 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.565 -32.621 12.294 35.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.029 4.029 4 C 0.003 3.997 5 N -0.076 5.076 6 C -0.154 4.154 7 C -0.205 4.205 8 C -0.161 4.161 9 C 0.382 3.618 10 O -0.402 6.402 11 N -0.330 5.330 12 C -0.036 4.036 13 C -0.171 4.171 14 C -0.150 4.150 15 C -0.130 4.130 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.403 5.403 19 C -0.373 4.373 20 H 0.108 0.892 21 C -0.191 4.191 22 N -0.584 5.584 23 Si 0.712 3.288 24 H -0.208 1.208 25 H -0.218 1.218 26 H -0.201 1.201 27 C -0.003 4.003 28 N -0.098 5.098 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.121 0.879 35 H 0.131 0.869 36 H 0.201 0.799 37 H 0.182 0.818 38 H 0.083 0.917 39 H 0.138 0.862 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.047 0.953 45 H 0.048 0.952 46 H 0.196 0.804 47 H 0.069 0.931 48 H 0.115 0.885 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.874 -32.707 11.513 35.557 hybrid contribution 1.013 0.438 1.662 1.995 sum -6.860 -32.269 13.175 35.524 Atomic orbital electron populations 1.22808 0.79645 1.03262 1.00590 1.87775 1.20807 1.26597 1.95637 1.22647 0.92122 0.85706 1.02376 1.21674 0.93073 0.78646 1.06258 1.45499 1.31182 1.11537 1.19427 1.22882 0.97641 0.96535 0.98351 1.21827 1.04421 0.95943 0.98268 1.22075 1.00977 0.93795 0.99236 1.17033 0.80983 0.84505 0.79287 1.90840 1.40630 1.42012 1.66682 1.47979 1.30581 1.23212 1.31260 1.22515 0.86141 0.91386 1.03597 1.21992 0.96712 0.98107 1.00244 1.21519 0.99114 0.95664 0.98714 1.21734 0.94293 0.95854 1.01132 0.90815 1.20613 0.93673 0.87372 0.94590 1.42783 1.50009 1.20177 1.27336 1.19042 1.20108 0.93653 1.04492 0.89241 1.24657 0.99645 0.96431 0.98367 1.69707 1.39843 1.09274 1.39526 0.86586 0.80778 0.76856 0.84618 1.20843 1.21798 1.20150 1.21768 0.98716 0.85987 0.93804 1.73360 1.22705 0.98002 1.15725 0.93710 0.93461 0.89061 0.92391 0.91241 0.87856 0.86942 0.79948 0.81788 0.91731 0.86160 0.91847 0.91114 0.91468 0.91602 0.95341 0.95224 0.80449 0.93138 0.88512 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.25 16 2 O -0.39 -2.38 10.70 -35.23 -0.38 -2.76 16 3 C 0.05 0.27 6.04 37.15 0.22 0.49 16 4 C 0.12 0.60 6.77 -4.04 -0.03 0.57 16 5 N -0.29 -2.29 3.41 -61.33 -0.21 -2.50 16 6 C -0.01 -0.09 11.40 -17.17 -0.20 -0.28 16 7 C -0.18 -1.94 10.81 -39.36 -0.43 -2.36 16 8 C 0.00 -0.01 6.83 -82.76 -0.56 -0.57 16 9 C 0.60 9.90 7.69 -12.39 -0.10 9.81 16 10 O -0.53 -10.76 16.36 5.30 0.09 -10.67 16 11 N -0.60 -9.02 2.97 -173.66 -0.52 -9.54 16 12 C 0.09 1.00 6.14 -3.48 -0.02 0.98 16 13 C -0.13 -1.41 6.10 -26.38 -0.16 -1.57 16 14 C -0.11 -1.39 5.17 -26.69 -0.14 -1.53 16 15 C -0.11 -1.80 2.37 -90.50 -0.21 -2.01 16 16 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 17 C 0.17 3.28 5.66 -4.04 -0.02 3.26 16 18 N -0.76 -18.96 5.18 -59.91 -0.31 -19.27 16 19 C -0.24 -7.17 10.47 -15.06 -0.16 -7.33 16 20 H 0.09 2.79 8.06 -52.49 -0.42 2.36 16 21 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 22 N -0.94 -30.40 13.97 55.49 0.78 -29.63 16 23 Si 0.88 23.76 27.74 -169.99 -4.71 19.04 16 24 H -0.28 -7.62 7.11 56.52 0.40 -7.22 16 25 H -0.29 -7.85 7.11 56.52 0.40 -7.45 16 26 H -0.28 -7.18 6.52 56.52 0.37 -6.81 16 27 C 0.12 2.01 5.53 -3.71 -0.02 1.99 16 28 N -0.26 -2.84 8.15 33.42 0.27 -2.56 16 29 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 34 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.11 0.27 8.04 -51.93 -0.42 -0.15 16 36 H 0.18 0.63 8.06 -52.48 -0.42 0.20 16 37 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.12 1.32 4.17 -70.26 -0.29 1.03 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.36 9.15 4.75 -40.82 -0.19 8.95 16 47 H 0.26 8.01 8.31 -40.82 -0.34 7.67 16 48 H 0.10 1.96 6.20 -51.93 -0.32 1.64 16 49 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 394.40 15.07 5.94 5.94 Total: -1.00 -37.21 394.40 -7.85 -45.07 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -8.00 Total: 4.13 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -0.80 Total: 2.74 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: 0.01 Total: -63.50 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.29 Total: -13.43 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -4.71 Total: 19.04 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.21 -7.85 -45.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713235913.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.756 kcal (2) G-P(sol) polarization free energy of solvation -37.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds