Wall clock time and date at job start Tue Mar 31 2020 19:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 114.00609 * 2 1 4 4 C 1.52991 * 109.47152 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47270 * 180.02562 * 4 3 2 6 6 C 1.35032 * 124.88916 * 125.27653 * 5 4 3 7 7 C 1.35361 * 107.23380 * 180.17303 * 6 5 4 8 8 C 1.41504 * 105.49981 * 359.59187 * 7 6 5 9 9 C 1.47715 * 126.52154 * 180.24230 * 8 7 6 10 10 O 1.21575 * 119.99406 * 7.05568 * 9 8 7 11 11 N 1.34772 * 120.00518 * 187.05450 * 9 8 7 12 12 C 1.46933 * 120.62555 * 6.73836 * 11 9 8 13 13 C 1.53627 * 108.54084 * 126.36808 * 12 11 9 14 14 C 1.53042 * 109.24171 * 54.85465 * 13 12 11 15 15 C 1.53041 * 109.53552 * 298.50683 * 14 13 12 16 16 H 1.08997 * 109.49775 * 301.41494 * 15 14 13 17 17 C 1.52999 * 109.52208 * 181.33313 * 15 14 13 18 18 N 1.46498 * 109.47372 * 175.14687 * 17 15 14 19 19 C 1.36932 * 120.00270 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00055 * 0.02562 * 19 18 17 21 21 C 1.38814 * 120.00006 * 179.97438 * 19 18 17 22 22 N 1.31621 * 120.00034 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00001 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47513 * 89.99723 * 23 21 19 25 25 H 1.48504 * 109.46752 * 209.99742 * 23 21 19 26 26 H 1.48507 * 109.46919 * 329.99252 * 23 21 19 27 27 C 1.46917 * 120.63203 * 187.01489 * 11 9 8 28 28 N 1.28477 * 124.88161 * 304.98390 * 5 4 3 29 29 H 1.09001 * 109.46565 * 299.99668 * 1 2 3 30 30 H 1.08997 * 109.46544 * 59.99365 * 1 2 3 31 31 H 1.08991 * 109.47118 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46609 * 60.00047 * 3 2 1 33 33 H 1.08994 * 109.46710 * 300.00487 * 3 2 1 34 34 H 1.09003 * 109.47251 * 60.00531 * 4 3 2 35 35 H 1.09004 * 109.47759 * 300.00089 * 4 3 2 36 36 H 1.08005 * 126.38302 * 0.02606 * 6 5 4 37 37 H 1.07995 * 127.25397 * 179.85626 * 7 6 5 38 38 H 1.09000 * 109.58166 * 246.19770 * 12 11 9 39 39 H 1.08997 * 109.58820 * 6.62178 * 12 11 9 40 40 H 1.08995 * 109.63349 * 294.86159 * 13 12 11 41 41 H 1.09002 * 109.42753 * 174.71901 * 13 12 11 42 42 H 1.08999 * 109.45906 * 178.48852 * 14 13 12 43 43 H 1.08996 * 109.44851 * 58.52509 * 14 13 12 44 44 H 1.08999 * 109.47252 * 295.15100 * 17 15 14 45 45 H 1.09004 * 109.47241 * 55.14740 * 17 15 14 46 46 H 0.97001 * 119.99604 * 0.02562 * 18 17 15 47 47 H 0.96995 * 120.00046 * 179.97438 * 22 21 19 48 48 H 1.08998 * 109.58879 * 353.37577 * 27 11 9 49 49 H 1.08997 * 109.58831 * 113.65874 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5355 1.1844 0.0006 5 7 4.1316 2.5227 0.0013 6 6 5.0297 2.9678 0.9060 7 6 5.3352 4.2439 0.5736 8 6 4.5736 4.5254 -0.5853 9 6 4.5594 5.7945 -1.3411 10 8 5.3428 6.6798 -1.0571 11 7 3.6781 5.9710 -2.3453 12 6 2.6302 4.9744 -2.6055 13 6 1.2697 5.6878 -2.6175 14 6 1.3107 6.8351 -3.6295 15 6 2.3809 7.8467 -3.2132 16 1 2.1565 8.2239 -2.2155 17 6 2.3989 9.0101 -4.2068 18 7 3.3411 10.0323 -3.7449 19 6 3.5262 11.1741 -4.4778 20 1 2.9773 11.3212 -5.3962 21 6 4.4186 12.1430 -4.0398 22 7 4.5969 13.2402 -4.7445 23 14 5.3676 11.8888 -2.4510 24 1 6.6481 11.1966 -2.7445 25 1 5.6490 13.2064 -1.8264 26 1 4.5599 11.0616 -1.5190 27 6 3.7506 7.1606 -3.2045 28 7 3.8789 3.4400 -0.8621 29 1 -0.3632 0.5138 0.8901 30 1 -0.3632 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6888 1.8463 0.8900 33 1 1.6887 1.8463 -0.8899 34 1 3.8575 0.6434 -0.8892 35 1 3.8569 0.6436 0.8908 36 1 5.4282 2.4103 1.7408 37 1 6.0196 4.9062 1.0828 38 1 2.8069 4.5023 -3.5719 39 1 2.6414 4.2189 -1.8199 40 1 1.0558 6.0853 -1.6254 41 1 0.4914 4.9795 -2.9018 42 1 0.3385 7.3269 -3.6604 43 1 1.5491 6.4397 -4.6169 44 1 2.7088 8.6464 -5.1865 45 1 1.4007 9.4420 -4.2787 46 1 3.8339 9.9003 -2.9199 47 1 5.2202 13.9174 -4.4383 48 1 4.5011 7.8480 -2.8142 49 1 4.0192 6.8634 -4.2181 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713235913.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:43 Heat of formation + Delta-G solvation = 1.140051 kcal Electronic energy + Delta-G solvation = -29557.344285 eV Core-core repulsion = 25521.347171 eV Total energy + Delta-G solvation = -4035.997114 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.77082 -41.09509 -39.00986 -38.81822 -36.77839 -35.09339 -34.42225 -33.28613 -32.12676 -31.57695 -30.50818 -27.83859 -27.21190 -26.73331 -24.81028 -24.56579 -23.12471 -22.72625 -22.23317 -21.42187 -20.23966 -19.67156 -18.48997 -18.02390 -17.49355 -17.14272 -16.99971 -16.68833 -16.67152 -16.32411 -15.87261 -15.68895 -15.45319 -15.29257 -14.92921 -14.76459 -14.41068 -14.33710 -14.20888 -14.11479 -14.01637 -13.80193 -13.37103 -13.07860 -12.98661 -12.80873 -12.58816 -12.33539 -12.23545 -12.21243 -11.98228 -11.90840 -11.74482 -11.48155 -11.42261 -11.03417 -10.94602 -10.73943 -10.29806 -10.12546 -9.66851 -9.32342 -8.07078 -5.38726 0.40989 1.13375 1.27445 1.32729 1.36590 1.41690 1.93172 2.25912 2.42705 2.78272 3.24868 3.27887 3.50434 3.66107 3.84243 3.84797 3.85500 3.95761 3.97085 4.08245 4.13538 4.23764 4.29109 4.43687 4.48438 4.51471 4.57578 4.64854 4.67964 4.70227 4.73981 4.74578 4.76640 4.88152 4.89093 4.95026 5.00852 5.05823 5.15943 5.25367 5.31809 5.45231 5.55215 5.72638 5.84848 6.04622 6.18110 6.30295 6.77741 7.03610 7.06981 7.81194 7.98075 9.14396 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017592 B = 0.002683 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.254083 B =10431.699257 C =11747.538004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.051 3.949 4 C 0.120 3.880 5 N -0.277 5.277 6 C 0.017 3.983 7 C -0.205 4.205 8 C -0.034 4.034 9 C 0.587 3.413 10 O -0.582 6.582 11 N -0.596 5.596 12 C 0.084 3.916 13 C -0.124 4.124 14 C -0.106 4.106 15 C -0.098 4.098 16 H 0.058 0.942 17 C 0.161 3.839 18 N -0.763 5.763 19 C -0.229 4.229 20 H 0.066 0.934 21 C -0.057 4.057 22 N -0.979 5.979 23 Si 0.944 3.056 24 H -0.284 1.284 25 H -0.288 1.288 26 H -0.266 1.266 27 C 0.121 3.879 28 N -0.262 5.262 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.102 0.898 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.111 0.889 35 H 0.146 0.854 36 H 0.231 0.769 37 H 0.158 0.842 38 H 0.078 0.922 39 H 0.131 0.869 40 H 0.054 0.946 41 H 0.107 0.893 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.034 0.966 45 H 0.035 0.965 46 H 0.361 0.639 47 H 0.258 0.742 48 H 0.056 0.944 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.866 -36.762 13.850 40.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.026 4.026 4 C 0.001 3.999 5 N -0.066 5.066 6 C -0.126 4.126 7 C -0.233 4.233 8 C -0.192 4.192 9 C 0.375 3.625 10 O -0.461 6.461 11 N -0.327 5.327 12 C -0.038 4.038 13 C -0.162 4.162 14 C -0.144 4.144 15 C -0.117 4.117 16 H 0.076 0.924 17 C 0.035 3.965 18 N -0.408 5.408 19 C -0.360 4.360 20 H 0.084 0.916 21 C -0.249 4.249 22 N -0.629 5.629 23 Si 0.772 3.228 24 H -0.211 1.211 25 H -0.214 1.214 26 H -0.192 1.192 27 C -0.002 4.002 28 N -0.099 5.099 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.120 0.880 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.129 0.871 35 H 0.164 0.836 36 H 0.248 0.752 37 H 0.176 0.824 38 H 0.096 0.904 39 H 0.148 0.852 40 H 0.073 0.927 41 H 0.125 0.875 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.194 0.806 47 H 0.067 0.933 48 H 0.075 0.925 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.241 -36.920 13.058 40.236 hybrid contribution 1.319 1.557 1.127 2.332 sum -7.922 -35.362 14.185 38.916 Atomic orbital electron populations 1.22962 0.78752 1.04206 1.00991 1.87750 1.21856 1.26804 1.95693 1.22596 0.92487 0.85546 1.02011 1.22010 0.92639 0.76927 1.08348 1.45849 1.30439 1.11878 1.18392 1.23460 0.95714 0.95149 0.98247 1.21989 1.05212 0.97813 0.98311 1.21687 1.03597 0.93393 1.00512 1.17592 0.80281 0.85280 0.79353 1.90788 1.42762 1.44136 1.68400 1.48081 1.31124 1.23046 1.30496 1.22782 0.85485 0.90861 1.04636 1.21971 0.97017 0.97943 0.99278 1.21514 0.97890 0.95182 0.99843 1.21594 0.95450 0.95478 0.99206 0.92389 1.20833 0.92442 0.87426 0.95784 1.42884 1.50981 1.20037 1.26916 1.19081 1.18607 0.94709 1.03622 0.91633 1.25340 1.01307 0.96538 1.01675 1.69844 1.41225 1.10400 1.41476 0.85581 0.79271 0.76765 0.81151 1.21067 1.21426 1.19151 1.21559 0.98005 0.86426 0.94165 1.73226 1.22415 0.97801 1.16480 0.93181 0.93206 0.87950 0.92345 0.92110 0.87095 0.83626 0.75229 0.82393 0.90419 0.85210 0.92671 0.87478 0.90286 0.90277 0.94772 0.94731 0.80598 0.93255 0.92494 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 113.37 1.25 1.40 16 2 O -0.40 -3.74 10.70 -148.98 -1.59 -5.33 16 3 C 0.05 0.40 6.04 71.98 0.43 0.83 16 4 C 0.12 0.67 6.77 86.38 0.58 1.26 16 5 N -0.28 -3.50 3.41 -347.95 -1.19 -4.68 16 6 C 0.02 0.20 11.40 83.54 0.95 1.15 16 7 C -0.21 -4.32 10.81 22.41 0.24 -4.08 16 8 C -0.03 -0.89 6.83 42.46 0.29 -0.60 16 9 C 0.59 20.15 7.69 86.75 0.67 20.82 16 10 O -0.58 -25.24 16.36 -3.95 -0.06 -25.31 16 11 N -0.60 -18.02 2.97 -821.62 -2.44 -20.46 16 12 C 0.08 1.78 6.14 86.51 0.53 2.31 16 13 C -0.12 -2.28 6.10 30.82 0.19 -2.09 16 14 C -0.11 -2.37 5.17 30.62 0.16 -2.21 16 15 C -0.10 -3.13 2.37 -10.71 -0.03 -3.16 16 16 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 17 C 0.16 6.39 5.66 86.38 0.49 6.88 16 18 N -0.76 -38.78 5.18 -343.45 -1.78 -40.56 16 19 C -0.23 -13.82 10.47 84.03 0.88 -12.94 16 20 H 0.07 4.21 8.06 -2.91 -0.02 4.19 16 21 C -0.06 -3.55 5.50 84.86 0.47 -3.09 16 22 N -0.98 -65.25 13.97 21.65 0.30 -64.95 16 23 Si 0.94 50.55 27.74 68.60 1.90 52.46 16 24 H -0.28 -15.21 7.11 99.48 0.71 -14.51 16 25 H -0.29 -15.16 7.11 99.48 0.71 -14.45 16 26 H -0.27 -13.67 6.52 99.48 0.65 -13.02 16 27 C 0.12 4.17 5.53 86.37 0.48 4.65 16 28 N -0.26 -5.15 8.15 -48.17 -0.39 -5.55 16 29 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.10 0.31 8.14 -2.39 -0.02 0.30 16 32 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.06 0.58 8.08 -2.39 -0.02 0.56 16 34 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.15 -0.08 8.04 -2.38 -0.02 -0.09 16 36 H 0.23 0.32 8.06 -2.91 -0.02 0.29 16 37 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.13 2.57 4.17 -26.10 -0.11 2.46 16 40 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.03 1.33 8.14 -2.39 -0.02 1.32 16 45 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.36 18.55 4.75 -92.71 -0.44 18.11 16 47 H 0.26 16.42 8.31 -92.71 -0.77 15.65 16 48 H 0.06 2.43 6.20 -2.39 -0.01 2.41 16 49 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -85.07 394.40 2.68 -82.38 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.35 Total: 20.86 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 7.58 Total: 11.14 kcal Atomic # 7 Polarization: -130.70 SS G_CDS: -5.49 Total: -136.19 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -1.66 Total: -30.64 kcal Atomic # 14 Polarization: 50.55 SS G_CDS: 1.90 Total: 52.46 kcal Total: -85.07 2.68 -82.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713235913.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.523 kcal (2) G-P(sol) polarization free energy of solvation -85.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds