Wall clock time and date at job start Tue Mar 31 2020 19:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42896 * 114.00084 * 2 1 4 4 C 1.53001 * 109.47052 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47037 * 179.97438 * 4 3 2 6 6 C 1.35038 * 124.88126 * 124.97261 * 5 4 3 7 7 C 1.35367 * 107.22655 * 179.72654 * 6 5 4 8 8 C 1.41497 * 105.50407 * 0.41758 * 7 6 5 9 9 C 1.47707 * 126.52198 * 179.84318 * 8 7 6 10 10 O 1.21573 * 119.99854 * 352.92212 * 9 8 7 11 11 N 1.34770 * 120.00519 * 172.92465 * 9 8 7 12 12 C 1.46930 * 120.62878 * 353.04798 * 11 9 8 13 13 C 1.53198 * 108.77399 * 233.58715 * 12 11 9 14 14 C 1.53042 * 109.31490 * 305.36579 * 13 12 11 15 15 C 1.53039 * 109.53896 * 61.36444 * 14 13 12 16 16 H 1.08999 * 109.52579 * 58.59968 * 15 14 13 17 17 C 1.52994 * 109.49654 * 178.68491 * 15 14 13 18 18 N 1.46502 * 109.47130 * 184.83909 * 17 15 14 19 19 C 1.36929 * 120.00409 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99871 * 0.02562 * 19 18 17 21 21 C 1.38809 * 120.00311 * 179.97438 * 19 18 17 22 22 N 1.31628 * 119.99972 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00008 * 359.97438 * 21 19 18 24 24 H 1.48492 * 109.47283 * 270.00059 * 23 21 19 25 25 H 1.48502 * 109.46948 * 30.00232 * 23 21 19 26 26 H 1.48500 * 109.46751 * 149.99962 * 23 21 19 27 27 C 1.46929 * 120.63541 * 173.02637 * 11 9 8 28 28 N 1.28459 * 124.88921 * 304.97852 * 5 4 3 29 29 H 1.08995 * 109.46875 * 300.00476 * 1 2 3 30 30 H 1.08997 * 109.46676 * 60.00754 * 1 2 3 31 31 H 1.08999 * 109.47169 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47578 * 59.99276 * 3 2 1 33 33 H 1.09001 * 109.46960 * 299.99406 * 3 2 1 34 34 H 1.09007 * 109.46923 * 60.00035 * 4 3 2 35 35 H 1.08993 * 109.47118 * 299.99359 * 4 3 2 36 36 H 1.07998 * 126.38314 * 0.02562 * 6 5 4 37 37 H 1.08004 * 127.24792 * 180.25935 * 7 6 5 38 38 H 1.09000 * 109.58652 * 353.37155 * 12 11 9 39 39 H 1.09000 * 109.58768 * 113.66066 * 12 11 9 40 40 H 1.09000 * 109.49840 * 65.31635 * 13 12 11 41 41 H 1.08999 * 109.49481 * 185.37778 * 13 12 11 42 42 H 1.09008 * 109.45438 * 301.34556 * 14 13 12 43 43 H 1.08991 * 109.45759 * 181.38773 * 14 13 12 44 44 H 1.09004 * 109.47391 * 64.84436 * 17 15 14 45 45 H 1.08999 * 109.47074 * 304.83912 * 17 15 14 46 46 H 0.97003 * 119.99545 * 359.97438 * 18 17 15 47 47 H 0.97002 * 119.99318 * 180.02562 * 22 21 19 48 48 H 1.09007 * 109.58365 * 6.62589 * 27 11 9 49 49 H 1.08992 * 109.70367 * 246.27236 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1314 2.5229 0.0000 6 6 5.0253 2.9707 0.9078 7 6 5.3397 4.2425 0.5672 8 6 4.5735 4.5251 -0.5883 9 6 4.5595 5.7933 -1.3454 10 8 5.1538 6.7635 -0.9170 11 7 3.8879 5.8751 -2.5109 12 6 3.2931 4.6764 -3.1179 13 6 3.7924 4.5551 -4.5611 14 6 3.4920 5.8546 -5.3116 15 6 4.2304 7.0153 -4.6410 16 1 5.3015 6.8133 -4.6394 17 6 3.9557 8.3084 -5.4113 18 7 4.7529 9.3963 -4.8394 19 6 4.6711 10.6565 -5.3686 20 1 4.0186 10.8486 -6.2075 21 6 5.4261 11.6874 -4.8264 22 7 5.3471 12.8989 -5.3349 23 14 6.5531 11.3557 -3.3740 24 1 5.8062 11.5704 -2.1087 25 1 7.0355 9.9524 -3.4322 26 1 7.7137 12.2807 -3.4268 27 6 3.7360 7.1645 -3.1987 28 7 3.8788 3.4393 -0.8640 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5137 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8463 -0.8901 34 1 3.8575 0.6434 -0.8892 35 1 3.8568 0.6439 0.8909 36 1 5.4197 2.4157 1.7462 37 1 6.0283 4.9034 1.0727 38 1 3.5922 3.7938 -2.5524 39 1 2.2067 4.7641 -3.1110 40 1 4.8675 4.3757 -4.5603 41 1 3.2854 3.7249 -5.0528 42 1 2.4191 6.0462 -5.2907 43 1 3.8241 5.7619 -6.3455 44 1 2.8968 8.5568 -5.3385 45 1 4.2256 8.1718 -6.4585 46 1 5.3381 9.2240 -4.0852 47 1 5.8750 13.6192 -4.9561 48 1 4.3273 7.9237 -2.6865 49 1 2.6866 7.4586 -3.2007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713235914.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:49 Heat of formation + Delta-G solvation = 27.681367 kcal Electronic energy + Delta-G solvation = -29469.827325 eV Core-core repulsion = 25434.981129 eV Total energy + Delta-G solvation = -4034.846196 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.03116 -39.90096 -38.58826 -37.54327 -35.06268 -34.38471 -32.89797 -31.69633 -31.11978 -30.27247 -29.74244 -27.10063 -26.00178 -25.59421 -24.10224 -22.85610 -22.32833 -21.66812 -21.06741 -20.20240 -19.22814 -17.86234 -17.53968 -17.06170 -16.84808 -16.62208 -16.13786 -15.80940 -15.31021 -15.02404 -14.62579 -14.55407 -14.20880 -14.15090 -13.90212 -13.66807 -13.40599 -13.25101 -12.99984 -12.85830 -12.60596 -12.53008 -12.33154 -12.25355 -11.96581 -11.75069 -11.43414 -11.14025 -10.89084 -10.73080 -10.53791 -10.37948 -10.30251 -10.18554 -10.02461 -9.84350 -9.52056 -9.46924 -9.36912 -8.80478 -8.48366 -7.13583 -5.67999 -3.03136 1.31718 1.82173 1.91095 3.00577 3.23028 3.37433 3.51163 3.56445 3.59678 3.91955 4.21005 4.31250 4.45607 4.54588 4.68941 4.70625 4.74742 4.79346 4.87313 4.98936 4.99382 5.04698 5.09879 5.11458 5.20242 5.36439 5.39209 5.44937 5.61286 5.63754 5.69385 5.76891 5.87344 5.95160 5.98098 6.10966 6.12764 6.16876 6.34316 6.38995 6.41666 6.44421 6.68999 6.75918 6.84540 7.41998 7.62246 8.07953 8.24162 8.51129 9.30598 10.03615 10.23258 11.50206 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017751 B = 0.002604 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.977056 B =10751.600642 C =11841.694964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.049 3.951 4 C 0.124 3.876 5 N -0.288 5.288 6 C -0.012 4.012 7 C -0.177 4.177 8 C -0.001 4.001 9 C 0.596 3.404 10 O -0.528 6.528 11 N -0.598 5.598 12 C 0.087 3.913 13 C -0.132 4.132 14 C -0.112 4.112 15 C -0.111 4.111 16 H 0.074 0.926 17 C 0.165 3.835 18 N -0.757 5.757 19 C -0.243 4.243 20 H 0.090 0.910 21 C 0.004 3.996 22 N -0.935 5.935 23 Si 0.882 3.118 24 H -0.282 1.282 25 H -0.275 1.275 26 H -0.292 1.292 27 C 0.119 3.881 28 N -0.263 5.263 29 H 0.044 0.956 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.183 0.817 37 H 0.165 0.835 38 H 0.122 0.878 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.029 0.971 45 H 0.030 0.970 46 H 0.362 0.638 47 H 0.259 0.741 48 H 0.096 0.904 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.918 -32.462 12.601 35.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.028 4.028 4 C 0.004 3.996 5 N -0.076 5.076 6 C -0.154 4.154 7 C -0.205 4.205 8 C -0.161 4.161 9 C 0.382 3.618 10 O -0.402 6.402 11 N -0.330 5.330 12 C -0.036 4.036 13 C -0.171 4.171 14 C -0.150 4.150 15 C -0.130 4.130 16 H 0.092 0.908 17 C 0.037 3.963 18 N -0.403 5.403 19 C -0.373 4.373 20 H 0.108 0.892 21 C -0.191 4.191 22 N -0.584 5.584 23 Si 0.712 3.288 24 H -0.209 1.209 25 H -0.201 1.201 26 H -0.218 1.218 27 C -0.003 4.003 28 N -0.098 5.098 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.122 0.878 35 H 0.131 0.869 36 H 0.200 0.800 37 H 0.182 0.818 38 H 0.139 0.861 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.046 0.954 45 H 0.048 0.952 46 H 0.196 0.804 47 H 0.069 0.931 48 H 0.115 0.885 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.394 -32.475 11.949 35.608 hybrid contribution 1.157 0.378 1.552 1.972 sum -7.237 -32.097 13.501 35.565 Atomic orbital electron populations 1.22805 0.79663 1.03246 1.00576 1.87772 1.20795 1.26631 1.95641 1.22649 0.92123 0.85648 1.02417 1.21677 0.93075 0.78622 1.06253 1.45497 1.31375 1.11606 1.19157 1.22886 0.97693 0.96616 0.98236 1.21829 1.04354 0.96007 0.98263 1.22071 1.01043 0.93777 0.99187 1.17028 0.78883 0.85437 0.80454 1.90839 1.43546 1.36902 1.68894 1.47980 1.53591 1.10019 1.21427 1.22415 0.97703 0.89092 0.94389 1.21913 1.01678 0.98132 0.95342 1.21519 1.00562 0.93691 0.99227 1.21737 1.00662 0.96194 0.94449 0.90798 1.20615 0.94984 0.85475 0.95178 1.42784 1.51879 1.06712 1.38928 1.19040 1.21629 0.83828 1.12774 0.89244 1.24659 0.99933 0.95373 0.99157 1.69715 1.44794 1.00276 1.43572 0.86583 0.81131 0.77404 0.83709 1.20860 1.20141 1.21796 1.21765 1.01877 0.84223 0.92413 1.73356 1.23517 0.97939 1.14980 0.93737 0.93479 0.89056 0.92426 0.91211 0.87844 0.86943 0.79952 0.81790 0.86100 0.91870 0.91821 0.91003 0.91642 0.91456 0.95358 0.95208 0.80449 0.93148 0.88526 0.91041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.39 -2.42 10.70 -35.23 -0.38 -2.80 16 3 C 0.05 0.28 6.04 37.16 0.22 0.50 16 4 C 0.12 0.60 6.77 -4.04 -0.03 0.57 16 5 N -0.29 -2.28 3.41 -61.33 -0.21 -2.49 16 6 C -0.01 -0.09 11.40 -17.16 -0.20 -0.29 16 7 C -0.18 -1.93 10.81 -39.36 -0.43 -2.36 16 8 C 0.00 -0.01 6.83 -82.77 -0.56 -0.57 16 9 C 0.60 9.90 7.69 -12.39 -0.10 9.80 16 10 O -0.53 -10.76 16.36 5.30 0.09 -10.67 16 11 N -0.60 -9.03 2.97 -173.92 -0.52 -9.54 16 12 C 0.09 1.02 6.11 -3.71 -0.02 0.99 16 13 C -0.13 -1.44 6.08 -26.61 -0.16 -1.60 16 14 C -0.11 -1.40 5.17 -26.69 -0.14 -1.54 16 15 C -0.11 -1.81 2.38 -90.50 -0.22 -2.02 16 16 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 17 C 0.17 3.29 5.65 -4.04 -0.02 3.27 16 18 N -0.76 -18.98 5.18 -59.91 -0.31 -19.29 16 19 C -0.24 -7.17 10.47 -15.06 -0.16 -7.32 16 20 H 0.09 2.79 8.06 -52.49 -0.42 2.36 16 21 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 22 N -0.94 -30.42 13.97 55.49 0.78 -29.64 16 23 Si 0.88 23.77 27.74 -169.99 -4.71 19.06 16 24 H -0.28 -7.63 7.11 56.52 0.40 -7.22 16 25 H -0.28 -7.19 6.52 56.52 0.37 -6.82 16 26 H -0.29 -7.86 7.11 56.52 0.40 -7.45 16 27 C 0.12 2.01 5.53 -3.71 -0.02 1.99 16 28 N -0.26 -2.83 8.15 33.42 0.27 -2.56 16 29 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 34 H 0.10 0.44 8.14 -51.92 -0.42 0.02 16 35 H 0.11 0.27 8.04 -51.93 -0.42 -0.15 16 36 H 0.18 0.63 8.06 -52.49 -0.42 0.20 16 37 H 0.16 1.71 8.06 -52.48 -0.42 1.29 16 38 H 0.12 1.35 4.17 -69.81 -0.29 1.06 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.36 9.16 4.75 -40.82 -0.19 8.96 16 47 H 0.26 8.01 8.31 -40.82 -0.34 7.67 16 48 H 0.10 1.96 6.20 -51.92 -0.32 1.64 16 49 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 394.37 15.07 5.94 5.94 Total: -1.00 -37.17 394.37 -7.86 -45.03 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -8.00 Total: 4.25 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -0.81 Total: 2.71 kcal Atomic # 7 Polarization: -63.54 SS G_CDS: 0.01 Total: -63.52 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.29 Total: -13.47 kcal Atomic # 14 Polarization: 23.77 SS G_CDS: -4.71 Total: 19.06 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.17 -7.86 -45.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713235914.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.713 kcal (2) G-P(sol) polarization free energy of solvation -37.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds