Wall clock time and date at job start Tue Mar 31 2020 19:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42896 * 114.00084 * 2 1 4 4 C 1.53001 * 109.47052 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47037 * 179.97438 * 4 3 2 6 6 C 1.35038 * 124.88126 * 124.97261 * 5 4 3 7 7 C 1.35367 * 107.22655 * 179.72654 * 6 5 4 8 8 C 1.41497 * 105.50407 * 0.41758 * 7 6 5 9 9 C 1.47707 * 126.52198 * 179.84318 * 8 7 6 10 10 O 1.21573 * 119.99854 * 352.92212 * 9 8 7 11 11 N 1.34770 * 120.00519 * 172.92465 * 9 8 7 12 12 C 1.46930 * 120.62878 * 353.04798 * 11 9 8 13 13 C 1.53198 * 108.77399 * 233.58715 * 12 11 9 14 14 C 1.53042 * 109.31490 * 305.36579 * 13 12 11 15 15 C 1.53039 * 109.53896 * 61.36444 * 14 13 12 16 16 H 1.08999 * 109.52579 * 58.59968 * 15 14 13 17 17 C 1.52994 * 109.49654 * 178.68491 * 15 14 13 18 18 N 1.46502 * 109.47130 * 184.83909 * 17 15 14 19 19 C 1.36929 * 120.00409 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99871 * 0.02562 * 19 18 17 21 21 C 1.38809 * 120.00311 * 179.97438 * 19 18 17 22 22 N 1.31628 * 119.99972 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00008 * 359.97438 * 21 19 18 24 24 H 1.48492 * 109.47283 * 270.00059 * 23 21 19 25 25 H 1.48502 * 109.46948 * 30.00232 * 23 21 19 26 26 H 1.48500 * 109.46751 * 149.99962 * 23 21 19 27 27 C 1.46929 * 120.63541 * 173.02637 * 11 9 8 28 28 N 1.28459 * 124.88921 * 304.97852 * 5 4 3 29 29 H 1.08995 * 109.46875 * 300.00476 * 1 2 3 30 30 H 1.08997 * 109.46676 * 60.00754 * 1 2 3 31 31 H 1.08999 * 109.47169 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47578 * 59.99276 * 3 2 1 33 33 H 1.09001 * 109.46960 * 299.99406 * 3 2 1 34 34 H 1.09007 * 109.46923 * 60.00035 * 4 3 2 35 35 H 1.08993 * 109.47118 * 299.99359 * 4 3 2 36 36 H 1.07998 * 126.38314 * 0.02562 * 6 5 4 37 37 H 1.08004 * 127.24792 * 180.25935 * 7 6 5 38 38 H 1.09000 * 109.58652 * 353.37155 * 12 11 9 39 39 H 1.09000 * 109.58768 * 113.66066 * 12 11 9 40 40 H 1.09000 * 109.49840 * 65.31635 * 13 12 11 41 41 H 1.08999 * 109.49481 * 185.37778 * 13 12 11 42 42 H 1.09008 * 109.45438 * 301.34556 * 14 13 12 43 43 H 1.08991 * 109.45759 * 181.38773 * 14 13 12 44 44 H 1.09004 * 109.47391 * 64.84436 * 17 15 14 45 45 H 1.08999 * 109.47074 * 304.83912 * 17 15 14 46 46 H 0.97003 * 119.99545 * 359.97438 * 18 17 15 47 47 H 0.97002 * 119.99318 * 180.02562 * 22 21 19 48 48 H 1.09007 * 109.58365 * 6.62589 * 27 11 9 49 49 H 1.08992 * 109.70367 * 246.27236 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1314 2.5229 0.0000 6 6 5.0253 2.9707 0.9078 7 6 5.3397 4.2425 0.5672 8 6 4.5735 4.5251 -0.5883 9 6 4.5595 5.7933 -1.3454 10 8 5.1538 6.7635 -0.9170 11 7 3.8879 5.8751 -2.5109 12 6 3.2931 4.6764 -3.1179 13 6 3.7924 4.5551 -4.5611 14 6 3.4920 5.8546 -5.3116 15 6 4.2304 7.0153 -4.6410 16 1 5.3015 6.8133 -4.6394 17 6 3.9557 8.3084 -5.4113 18 7 4.7529 9.3963 -4.8394 19 6 4.6711 10.6565 -5.3686 20 1 4.0186 10.8486 -6.2075 21 6 5.4261 11.6874 -4.8264 22 7 5.3471 12.8989 -5.3349 23 14 6.5531 11.3557 -3.3740 24 1 5.8062 11.5704 -2.1087 25 1 7.0355 9.9524 -3.4322 26 1 7.7137 12.2807 -3.4268 27 6 3.7360 7.1645 -3.1987 28 7 3.8788 3.4393 -0.8640 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5137 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8463 -0.8901 34 1 3.8575 0.6434 -0.8892 35 1 3.8568 0.6439 0.8909 36 1 5.4197 2.4157 1.7462 37 1 6.0283 4.9034 1.0727 38 1 3.5922 3.7938 -2.5524 39 1 2.2067 4.7641 -3.1110 40 1 4.8675 4.3757 -4.5603 41 1 3.2854 3.7249 -5.0528 42 1 2.4191 6.0462 -5.2907 43 1 3.8241 5.7619 -6.3455 44 1 2.8968 8.5568 -5.3385 45 1 4.2256 8.1718 -6.4585 46 1 5.3381 9.2240 -4.0852 47 1 5.8750 13.6192 -4.9561 48 1 4.3273 7.9237 -2.6865 49 1 2.6866 7.4586 -3.2007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713235914.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:47 Heat of formation + Delta-G solvation = 1.176437 kcal Electronic energy + Delta-G solvation = -29470.976665 eV Core-core repulsion = 25434.981129 eV Total energy + Delta-G solvation = -4035.995536 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.77028 -41.09898 -39.01736 -38.82627 -36.78127 -35.09677 -34.41898 -33.29053 -32.12663 -31.58013 -30.51548 -27.84474 -27.21976 -26.72894 -24.83364 -24.55711 -23.11773 -22.72367 -22.22972 -21.42833 -20.23298 -19.66998 -18.49035 -17.94322 -17.62113 -17.10368 -16.98834 -16.74728 -16.67816 -16.18023 -15.95293 -15.78501 -15.41005 -15.27042 -14.91848 -14.78043 -14.40239 -14.29497 -14.20639 -14.18447 -13.99116 -13.80229 -13.37157 -13.05192 -13.00244 -12.83270 -12.59428 -12.33079 -12.24331 -12.22427 -11.97623 -11.90719 -11.74220 -11.47886 -11.41825 -11.03307 -10.94050 -10.75392 -10.29297 -10.12713 -9.66825 -9.32213 -8.07004 -5.38628 0.41173 1.13009 1.27597 1.32886 1.36565 1.41844 1.93144 2.26732 2.42775 2.76982 3.24925 3.27990 3.50611 3.65767 3.83409 3.84528 3.86491 3.95784 3.97043 4.09284 4.13975 4.23702 4.29296 4.43559 4.47018 4.49748 4.58051 4.63995 4.67423 4.70238 4.74003 4.74692 4.76759 4.86370 4.89376 4.95472 5.01136 5.06545 5.16516 5.25667 5.32363 5.45592 5.55607 5.72686 5.84765 6.03069 6.18193 6.30475 6.77948 7.03674 7.07137 7.81259 7.98179 9.14431 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017751 B = 0.002604 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.977056 B =10751.600642 C =11841.694964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.401 6.401 3 C 0.052 3.948 4 C 0.121 3.879 5 N -0.277 5.277 6 C 0.017 3.983 7 C -0.205 4.205 8 C -0.034 4.034 9 C 0.587 3.413 10 O -0.582 6.582 11 N -0.596 5.596 12 C 0.085 3.915 13 C -0.125 4.125 14 C -0.106 4.106 15 C -0.098 4.098 16 H 0.057 0.943 17 C 0.161 3.839 18 N -0.763 5.763 19 C -0.229 4.229 20 H 0.066 0.934 21 C -0.057 4.057 22 N -0.978 5.978 23 Si 0.944 3.056 24 H -0.284 1.284 25 H -0.266 1.266 26 H -0.288 1.288 27 C 0.121 3.879 28 N -0.262 5.262 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.104 0.896 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.114 0.886 35 H 0.146 0.854 36 H 0.231 0.769 37 H 0.158 0.842 38 H 0.131 0.869 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.035 0.965 45 H 0.035 0.965 46 H 0.361 0.639 47 H 0.258 0.742 48 H 0.056 0.944 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.539 -36.909 13.661 40.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.026 4.026 4 C 0.002 3.998 5 N -0.066 5.066 6 C -0.126 4.126 7 C -0.233 4.233 8 C -0.192 4.192 9 C 0.375 3.625 10 O -0.461 6.461 11 N -0.327 5.327 12 C -0.037 4.037 13 C -0.163 4.163 14 C -0.144 4.144 15 C -0.118 4.118 16 H 0.076 0.924 17 C 0.035 3.965 18 N -0.408 5.408 19 C -0.360 4.360 20 H 0.084 0.916 21 C -0.249 4.249 22 N -0.629 5.629 23 Si 0.772 3.228 24 H -0.210 1.210 25 H -0.192 1.192 26 H -0.214 1.214 27 C -0.001 4.001 28 N -0.099 5.099 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.122 0.878 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.132 0.868 35 H 0.164 0.836 36 H 0.248 0.752 37 H 0.176 0.824 38 H 0.148 0.852 39 H 0.096 0.904 40 H 0.072 0.928 41 H 0.125 0.875 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.194 0.806 47 H 0.067 0.933 48 H 0.075 0.925 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.056 -37.004 12.978 40.246 hybrid contribution 1.213 1.610 1.200 2.345 sum -7.843 -35.394 14.178 38.927 Atomic orbital electron populations 1.22959 0.78811 1.04241 1.00884 1.87749 1.21796 1.26762 1.95678 1.22591 0.92700 0.85484 1.01841 1.22015 0.92410 0.76922 1.08496 1.45849 1.30598 1.11946 1.18165 1.23464 0.95717 0.95235 0.98169 1.21990 1.05156 0.97866 0.98315 1.21682 1.03611 0.93432 1.00461 1.17585 0.78055 0.86182 0.80664 1.90787 1.45970 1.39066 1.70268 1.48080 1.53247 1.10300 1.21104 1.22674 0.98364 0.87834 0.94819 1.21896 1.01530 0.98224 0.94616 1.21511 1.00759 0.92600 0.99526 1.21597 1.00285 0.95917 0.93966 0.92429 1.20834 0.94369 0.85663 0.95618 1.42884 1.52518 1.06509 1.38899 1.19079 1.19928 0.85586 1.11406 0.91632 1.25343 1.02110 0.95330 1.02102 1.69852 1.46397 1.01244 1.45447 0.85578 0.79263 0.77605 0.80305 1.21046 1.19178 1.21433 1.21557 1.01435 0.84651 0.92500 1.73223 1.23116 0.97724 1.15834 0.93287 0.93349 0.87805 0.92606 0.92305 0.86797 0.83606 0.75230 0.82400 0.85231 0.90393 0.92760 0.87467 0.90240 0.90330 0.94740 0.94747 0.80600 0.93264 0.92495 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 113.37 1.25 1.41 16 2 O -0.40 -3.86 10.70 -148.98 -1.59 -5.45 16 3 C 0.05 0.43 6.04 71.98 0.44 0.87 16 4 C 0.12 0.67 6.77 86.38 0.58 1.25 16 5 N -0.28 -3.48 3.41 -347.94 -1.19 -4.67 16 6 C 0.02 0.20 11.40 83.54 0.95 1.15 16 7 C -0.21 -4.32 10.81 22.41 0.24 -4.07 16 8 C -0.03 -0.89 6.83 42.45 0.29 -0.60 16 9 C 0.59 20.14 7.69 86.75 0.67 20.81 16 10 O -0.58 -25.23 16.36 -3.94 -0.06 -25.29 16 11 N -0.60 -18.02 2.97 -822.44 -2.44 -20.47 16 12 C 0.08 1.80 6.11 86.36 0.53 2.33 16 13 C -0.12 -2.35 6.08 30.67 0.19 -2.16 16 14 C -0.11 -2.39 5.17 30.62 0.16 -2.23 16 15 C -0.10 -3.16 2.38 -10.72 -0.03 -3.18 16 16 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 17 C 0.16 6.40 5.65 86.38 0.49 6.89 16 18 N -0.76 -38.80 5.18 -343.46 -1.78 -40.58 16 19 C -0.23 -13.81 10.47 84.03 0.88 -12.93 16 20 H 0.07 4.21 8.06 -2.91 -0.02 4.19 16 21 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 22 N -0.98 -65.26 13.97 21.65 0.30 -64.95 16 23 Si 0.94 50.59 27.74 68.60 1.90 52.49 16 24 H -0.28 -15.19 7.11 99.48 0.71 -14.49 16 25 H -0.27 -13.70 6.52 99.48 0.65 -13.05 16 26 H -0.29 -15.17 7.11 99.48 0.71 -14.47 16 27 C 0.12 4.17 5.53 86.36 0.48 4.65 16 28 N -0.26 -5.14 8.15 -48.18 -0.39 -5.53 16 29 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.06 0.62 8.08 -2.39 -0.02 0.60 16 34 H 0.11 0.50 8.14 -2.38 -0.02 0.48 16 35 H 0.15 -0.09 8.04 -2.39 -0.02 -0.11 16 36 H 0.23 0.31 8.06 -2.91 -0.02 0.29 16 37 H 0.16 3.38 8.06 -2.91 -0.02 3.35 16 38 H 0.13 2.61 4.17 -25.52 -0.11 2.50 16 39 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 43 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 45 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.36 18.57 4.75 -92.71 -0.44 18.13 16 47 H 0.26 16.42 8.31 -92.71 -0.77 15.65 16 48 H 0.06 2.42 6.20 -2.38 -0.01 2.41 16 49 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -84.94 394.37 2.67 -82.27 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.35 Total: 21.10 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 7.58 Total: 11.08 kcal Atomic # 7 Polarization: -130.70 SS G_CDS: -5.50 Total: -136.20 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -1.66 Total: -30.74 kcal Atomic # 14 Polarization: 50.59 SS G_CDS: 1.90 Total: 52.49 kcal Total: -84.94 2.67 -82.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713235914.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.449 kcal (2) G-P(sol) polarization free energy of solvation -84.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds