Wall clock time and date at job start Tue Mar 31 2020 19:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47163 * 2 1 4 4 C 1.53005 * 109.47266 * 240.00468 * 2 1 3 5 5 N 1.46495 * 109.47429 * 120.00138 * 2 1 3 6 6 N 1.28780 * 125.45502 * 240.00049 * 5 2 1 7 7 N 1.28994 * 108.72711 * 179.72724 * 6 5 2 8 8 C 1.33312 * 107.35526 * 0.43278 * 7 6 5 9 9 C 1.50706 * 126.54943 * 179.84203 * 8 7 6 10 10 C 1.50703 * 109.46719 * 269.68515 * 9 8 7 11 11 O 1.21279 * 119.99926 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99773 * 180.02562 * 10 9 8 13 13 C 1.46504 * 119.99531 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46883 * 179.97438 * 13 12 10 15 15 H 1.08995 * 110.64266 * 308.14784 * 14 13 12 16 16 C 1.55151 * 110.71849 * 184.99998 * 14 13 12 17 17 C 1.54910 * 101.58008 * 206.13638 * 16 14 13 18 18 N 1.47422 * 104.83370 * 37.01045 * 17 16 14 19 19 C 1.36935 * 125.64924 * 155.81983 * 18 17 16 20 20 H 1.08000 * 120.00218 * 180.02562 * 19 18 17 21 21 C 1.38813 * 120.00024 * 0.03196 * 19 18 17 22 22 N 1.31620 * 119.99921 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00149 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46668 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.46820 * 119.99851 * 23 21 19 26 26 H 1.48495 * 109.46903 * 240.00175 * 23 21 19 27 27 C 1.47022 * 108.70125 * 335.87461 * 18 17 16 28 28 N 1.28884 * 125.44535 * 59.99955 * 5 2 1 29 29 H 1.08999 * 109.47302 * 299.99493 * 1 2 3 30 30 H 1.09006 * 109.47036 * 59.99446 * 1 2 3 31 31 H 1.08997 * 109.47096 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47353 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47285 * 300.00217 * 3 2 1 34 34 H 1.08999 * 109.46598 * 60.00076 * 3 2 1 35 35 H 1.08997 * 109.47150 * 300.00073 * 4 2 1 36 36 H 1.09006 * 109.47023 * 60.00078 * 4 2 1 37 37 H 1.09002 * 109.47034 * 179.97438 * 4 2 1 38 38 H 1.08998 * 109.46844 * 149.68807 * 9 8 7 39 39 H 1.08993 * 109.47028 * 29.68117 * 9 8 7 40 40 H 0.96992 * 120.00503 * 359.97438 * 12 10 9 41 41 H 1.09001 * 109.46891 * 60.00097 * 13 12 10 42 42 H 1.08993 * 109.47378 * 299.99469 * 13 12 10 43 43 H 1.08995 * 111.01027 * 324.21324 * 16 14 13 44 44 H 1.09004 * 111.00109 * 88.02905 * 16 14 13 45 45 H 1.09005 * 110.36420 * 155.85299 * 17 16 14 46 46 H 1.09003 * 110.36913 * 278.06293 * 17 16 14 47 47 H 0.96998 * 119.99944 * 180.02562 * 22 21 19 48 48 H 1.09003 * 109.87811 * 241.63637 * 27 18 17 49 49 H 1.09003 * 109.88190 * 120.47630 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1961 6 7 2.7619 -0.1686 2.1088 7 7 2.9940 -1.0586 3.0132 8 6 2.3753 -2.1781 2.6374 9 6 2.3653 -3.4902 3.3786 10 6 3.5221 -4.3377 2.9153 11 8 4.2797 -3.9177 2.0664 12 7 3.7142 -5.5626 3.4435 13 6 4.8385 -6.3866 2.9926 14 6 4.8285 -7.7187 3.7452 15 1 4.7751 -7.5519 4.8210 16 6 6.0780 -8.5637 3.3820 17 6 5.5668 -10.0026 3.6427 18 7 4.1592 -9.9882 3.2049 19 6 3.4366 -11.0804 2.8048 20 1 2.4067 -10.9647 2.5008 21 6 4.0277 -12.3362 2.7899 22 7 5.2829 -12.4772 3.1600 23 14 3.0418 -13.8263 2.2447 24 1 1.6652 -13.4033 1.8822 25 1 3.6959 -14.4480 1.0654 26 1 2.9803 -14.8119 3.3537 27 6 3.6601 -8.6067 3.2679 28 7 1.7726 -1.9179 1.5032 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7488 -1.2494 36 1 1.6767 -0.2072 -2.1393 37 1 3.1300 -0.7207 -1.2495 38 1 1.4296 -4.0127 3.1798 39 1 2.4572 -3.3037 4.4486 40 1 3.1081 -5.8986 4.1221 41 1 5.7744 -5.8644 3.1914 42 1 4.7464 -6.5728 1.9226 43 1 6.3498 -8.4293 2.3351 44 1 6.9164 -8.3220 4.0353 45 1 6.1394 -10.7208 3.0556 46 1 5.6333 -10.2425 4.7039 47 1 5.6961 -13.3547 3.1492 48 1 2.8332 -8.5432 3.9753 49 1 3.3305 -8.2862 2.2796 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713529107.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:51 Heat of formation + Delta-G solvation = 107.906301 kcal Electronic energy + Delta-G solvation = -28681.456952 eV Core-core repulsion = 24682.382321 eV Total energy + Delta-G solvation = -3999.074631 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.48412 -39.73853 -38.02807 -37.62397 -34.68468 -33.72496 -33.36215 -32.51762 -30.33307 -29.41781 -28.19328 -28.07567 -27.81900 -25.51208 -24.76956 -23.71637 -22.52025 -20.93744 -20.70230 -19.97619 -19.59503 -17.68209 -17.38171 -16.95722 -16.61420 -16.26409 -15.57923 -15.11308 -14.79232 -14.66292 -14.63751 -14.30254 -13.87736 -13.76909 -13.54185 -13.46733 -13.04993 -13.00737 -12.87116 -12.50621 -12.38394 -12.35937 -12.06386 -12.00150 -11.77544 -11.69395 -11.57178 -11.50043 -11.03328 -10.96636 -10.95355 -10.82659 -10.47509 -10.38063 -10.12454 -10.01176 -9.89904 -9.73119 -9.49767 -8.98758 -8.65885 -6.83796 -5.66051 -3.07726 1.12929 1.63353 2.00004 2.59882 3.18794 3.39117 3.44456 3.47076 3.60491 3.87592 4.00698 4.11119 4.34925 4.47938 4.69653 4.85452 4.89007 4.95350 4.97739 5.04641 5.10295 5.12674 5.13287 5.23131 5.27336 5.39963 5.40641 5.48617 5.52525 5.55756 5.61551 5.70767 5.77068 5.89046 6.07181 6.08680 6.11514 6.34893 6.42035 6.55341 6.59152 6.71994 6.90942 7.49241 7.51383 7.62651 7.85456 8.19343 8.27207 8.36109 9.21623 9.82646 10.47403 11.37929 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.020727 B = 0.001915 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.542585 B =14619.602276 C =15327.118981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.179 3.821 3 C -0.152 4.152 4 C -0.160 4.160 5 N -0.130 5.130 6 N -0.063 5.063 7 N -0.278 5.278 8 C 0.187 3.813 9 C -0.046 4.046 10 C 0.519 3.481 11 O -0.536 6.536 12 N -0.721 5.721 13 C 0.133 3.867 14 C -0.114 4.114 15 H 0.077 0.923 16 C -0.136 4.136 17 C 0.151 3.849 18 N -0.605 5.605 19 C -0.222 4.222 20 H 0.077 0.923 21 C -0.013 4.013 22 N -0.922 5.922 23 Si 0.914 3.086 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.291 1.291 27 C 0.141 3.859 28 N -0.294 5.294 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.403 0.597 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.107 0.893 46 H 0.012 0.988 47 H 0.251 0.749 48 H 0.019 0.981 49 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.798 26.807 -3.781 28.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.098 3.902 3 C -0.211 4.211 4 C -0.218 4.218 5 N -0.044 5.044 6 N -0.056 5.056 7 N -0.148 5.148 8 C -0.097 4.097 9 C -0.088 4.088 10 C 0.303 3.697 11 O -0.413 6.413 12 N -0.373 5.373 13 C 0.010 3.990 14 C -0.133 4.133 15 H 0.095 0.905 16 C -0.175 4.175 17 C 0.027 3.973 18 N -0.331 5.331 19 C -0.350 4.350 20 H 0.095 0.905 21 C -0.208 4.208 22 N -0.571 5.571 23 Si 0.745 3.255 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.218 1.218 27 C 0.015 3.985 28 N -0.144 5.144 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.238 0.762 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.124 0.876 46 H 0.030 0.970 47 H 0.062 0.938 48 H 0.037 0.963 49 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -8.097 27.535 -4.584 29.064 hybrid contribution -0.891 -1.508 0.248 1.769 sum -8.987 26.026 -4.336 27.874 Atomic orbital electron populations 1.22226 0.90888 1.04564 1.03936 1.21381 0.96066 0.92992 0.79781 1.22087 1.03260 0.91537 1.04167 1.22241 1.02657 1.02021 0.94877 1.50413 1.30321 1.05571 1.18066 1.78877 1.08755 1.22452 0.95504 1.75791 1.20043 0.98864 1.20149 1.24585 0.96518 0.96920 0.91627 1.19877 1.00318 0.87806 1.00846 1.20094 0.85754 0.81865 0.82020 1.90735 1.46730 1.71994 1.31843 1.45983 1.31738 1.16311 1.43265 1.21480 0.88277 0.90008 0.99232 1.22447 0.98654 0.92896 0.99343 0.90456 1.23008 0.95192 0.98635 1.00652 1.21931 0.85713 0.91780 0.97918 1.44513 1.09584 1.01526 1.77465 1.19121 0.94503 0.85013 1.36363 0.90474 1.24801 0.96563 0.97579 1.01871 1.69806 1.11264 1.21935 1.54070 0.85996 0.78863 0.82774 0.77860 1.20543 1.21737 1.21773 1.21342 0.93713 0.86174 0.97249 1.74549 1.24345 0.99327 1.16196 0.91459 0.89188 0.90365 0.90565 0.89280 0.90653 0.90315 0.89233 0.91271 0.85819 0.85576 0.76236 0.91582 0.91220 0.91874 0.92102 0.87551 0.96974 0.93777 0.96332 0.95794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 8.66 37.16 0.32 -0.49 16 2 C 0.18 1.27 1.30 -131.82 -0.17 1.10 16 3 C -0.15 -0.79 7.91 37.16 0.29 -0.50 16 4 C -0.16 -1.04 8.66 37.16 0.32 -0.72 16 5 N -0.13 -1.48 3.73 0.48 0.00 -1.48 16 6 N -0.06 -0.84 12.24 60.35 0.74 -0.10 16 7 N -0.28 -4.02 12.50 32.45 0.41 -3.62 16 8 C 0.19 2.46 6.86 -156.62 -1.07 1.38 16 9 C -0.05 -0.45 6.33 -29.03 -0.18 -0.64 16 10 C 0.52 6.97 7.82 -10.98 -0.09 6.88 16 11 O -0.54 -9.69 16.03 5.56 0.09 -9.60 16 12 N -0.72 -8.78 5.47 -60.29 -0.33 -9.11 16 13 C 0.13 1.95 5.02 -4.04 -0.02 1.93 16 14 C -0.11 -1.85 2.96 -88.79 -0.26 -2.12 16 15 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 16 C -0.14 -2.50 6.53 -24.59 -0.16 -2.66 16 17 C 0.15 3.63 5.89 -2.53 -0.01 3.62 16 18 N -0.60 -15.32 3.39 -170.07 -0.58 -15.89 16 19 C -0.22 -6.15 10.27 -15.06 -0.15 -6.31 16 20 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 21 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 22 N -0.92 -26.83 10.09 55.49 0.56 -26.27 16 23 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 C 0.14 2.81 6.75 -3.07 -0.02 2.79 16 28 N -0.29 -3.78 11.83 32.47 0.38 -3.39 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.40 3.82 8.47 -40.82 -0.35 3.48 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.07 1.14 7.93 -51.93 -0.41 0.73 16 43 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.11 2.89 5.87 -51.93 -0.30 2.59 16 46 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 48 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.02 0.49 7.68 -51.93 -0.40 0.09 16 LS Contribution 401.03 15.07 6.04 6.04 Total: -1.00 -36.31 401.03 -7.21 -43.52 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -8.19 Total: -0.91 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -1.31 Total: 3.81 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: 1.18 Total: -59.87 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.31 -7.21 -43.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713529107.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.426 kcal (2) G-P(sol) polarization free energy of solvation -36.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds