Wall clock time and date at job start Tue Mar 31 2020 19:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47163 * 2 1 4 4 C 1.53005 * 109.47266 * 240.00468 * 2 1 3 5 5 N 1.46495 * 109.47429 * 120.00138 * 2 1 3 6 6 N 1.28780 * 125.45502 * 240.00049 * 5 2 1 7 7 N 1.28994 * 108.72711 * 179.72724 * 6 5 2 8 8 C 1.33312 * 107.35526 * 0.43278 * 7 6 5 9 9 C 1.50706 * 126.54943 * 179.84203 * 8 7 6 10 10 C 1.50703 * 109.46719 * 269.68515 * 9 8 7 11 11 O 1.21279 * 119.99926 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99773 * 180.02562 * 10 9 8 13 13 C 1.46504 * 119.99531 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46883 * 179.97438 * 13 12 10 15 15 H 1.08995 * 110.64266 * 308.14784 * 14 13 12 16 16 C 1.55151 * 110.71849 * 184.99998 * 14 13 12 17 17 C 1.54910 * 101.58008 * 206.13638 * 16 14 13 18 18 N 1.47422 * 104.83370 * 37.01045 * 17 16 14 19 19 C 1.36935 * 125.64924 * 155.81983 * 18 17 16 20 20 H 1.08000 * 120.00218 * 180.02562 * 19 18 17 21 21 C 1.38813 * 120.00024 * 0.03196 * 19 18 17 22 22 N 1.31620 * 119.99921 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00149 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46668 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.46820 * 119.99851 * 23 21 19 26 26 H 1.48495 * 109.46903 * 240.00175 * 23 21 19 27 27 C 1.47022 * 108.70125 * 335.87461 * 18 17 16 28 28 N 1.28884 * 125.44535 * 59.99955 * 5 2 1 29 29 H 1.08999 * 109.47302 * 299.99493 * 1 2 3 30 30 H 1.09006 * 109.47036 * 59.99446 * 1 2 3 31 31 H 1.08997 * 109.47096 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47353 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47285 * 300.00217 * 3 2 1 34 34 H 1.08999 * 109.46598 * 60.00076 * 3 2 1 35 35 H 1.08997 * 109.47150 * 300.00073 * 4 2 1 36 36 H 1.09006 * 109.47023 * 60.00078 * 4 2 1 37 37 H 1.09002 * 109.47034 * 179.97438 * 4 2 1 38 38 H 1.08998 * 109.46844 * 149.68807 * 9 8 7 39 39 H 1.08993 * 109.47028 * 29.68117 * 9 8 7 40 40 H 0.96992 * 120.00503 * 359.97438 * 12 10 9 41 41 H 1.09001 * 109.46891 * 60.00097 * 13 12 10 42 42 H 1.08993 * 109.47378 * 299.99469 * 13 12 10 43 43 H 1.08995 * 111.01027 * 324.21324 * 16 14 13 44 44 H 1.09004 * 111.00109 * 88.02905 * 16 14 13 45 45 H 1.09005 * 110.36420 * 155.85299 * 17 16 14 46 46 H 1.09003 * 110.36913 * 278.06293 * 17 16 14 47 47 H 0.96998 * 119.99944 * 180.02562 * 22 21 19 48 48 H 1.09003 * 109.87811 * 241.63637 * 27 18 17 49 49 H 1.09003 * 109.88190 * 120.47630 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1961 6 7 2.7619 -0.1686 2.1088 7 7 2.9940 -1.0586 3.0132 8 6 2.3753 -2.1781 2.6374 9 6 2.3653 -3.4902 3.3786 10 6 3.5221 -4.3377 2.9153 11 8 4.2797 -3.9177 2.0664 12 7 3.7142 -5.5626 3.4435 13 6 4.8385 -6.3866 2.9926 14 6 4.8285 -7.7187 3.7452 15 1 4.7751 -7.5519 4.8210 16 6 6.0780 -8.5637 3.3820 17 6 5.5668 -10.0026 3.6427 18 7 4.1592 -9.9882 3.2049 19 6 3.4366 -11.0804 2.8048 20 1 2.4067 -10.9647 2.5008 21 6 4.0277 -12.3362 2.7899 22 7 5.2829 -12.4772 3.1600 23 14 3.0418 -13.8263 2.2447 24 1 1.6652 -13.4033 1.8822 25 1 3.6959 -14.4480 1.0654 26 1 2.9803 -14.8119 3.3537 27 6 3.6601 -8.6067 3.2679 28 7 1.7726 -1.9179 1.5032 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7488 -1.2494 36 1 1.6767 -0.2072 -2.1393 37 1 3.1300 -0.7207 -1.2495 38 1 1.4296 -4.0127 3.1798 39 1 2.4572 -3.3037 4.4486 40 1 3.1081 -5.8986 4.1221 41 1 5.7744 -5.8644 3.1914 42 1 4.7464 -6.5728 1.9226 43 1 6.3498 -8.4293 2.3351 44 1 6.9164 -8.3220 4.0353 45 1 6.1394 -10.7208 3.0556 46 1 5.6333 -10.2425 4.7039 47 1 5.6961 -13.3547 3.1492 48 1 2.8332 -8.5432 3.9753 49 1 3.3305 -8.2862 2.2796 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713529107.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:50 Heat of formation + Delta-G solvation = 81.758824 kcal Electronic energy + Delta-G solvation = -28682.590792 eV Core-core repulsion = 24682.382321 eV Total energy + Delta-G solvation = -4000.208471 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -45.38619 -40.86015 -39.26989 -38.58069 -36.07855 -34.66537 -34.35186 -34.11936 -31.81160 -30.75147 -29.55005 -28.52964 -28.41314 -27.22960 -25.64946 -25.24640 -23.55881 -22.20147 -21.65319 -21.45041 -20.96046 -18.93696 -18.53616 -18.06167 -17.69381 -17.41136 -16.78767 -16.63916 -16.24064 -15.56558 -15.49969 -15.21226 -15.17657 -14.78795 -14.59280 -14.48505 -14.25054 -14.00850 -13.53319 -13.44829 -13.42696 -13.23273 -13.22144 -13.07234 -12.86558 -12.85432 -12.78418 -12.69472 -12.56481 -12.16399 -11.97132 -11.94471 -11.88505 -11.85762 -11.80666 -11.57291 -11.41942 -11.30171 -10.82461 -10.73329 -10.11233 -8.86109 -7.76449 -5.20278 0.21976 0.92583 1.05428 1.47121 1.47913 1.57691 1.58194 2.20035 2.50331 2.82678 3.16081 3.33320 3.51723 3.59499 3.64468 3.67329 3.75931 3.87053 4.01265 4.09279 4.23172 4.40568 4.45731 4.47871 4.51757 4.54137 4.59884 4.66575 4.68021 4.71383 4.72495 4.73533 4.78345 4.84856 4.94211 5.01500 5.08201 5.10550 5.14680 5.21761 5.35279 5.35719 5.44785 5.50559 5.67736 5.84549 6.33410 6.52436 7.12600 7.20490 7.33685 7.80871 8.44183 9.25639 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.020727 B = 0.001915 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.542585 B =14619.602276 C =15327.118981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.162 3.838 3 C -0.149 4.149 4 C -0.156 4.156 5 N -0.120 5.120 6 N -0.078 5.078 7 N -0.308 5.308 8 C 0.174 3.826 9 C -0.040 4.040 10 C 0.520 3.480 11 O -0.588 6.588 12 N -0.709 5.709 13 C 0.145 3.855 14 C -0.092 4.092 15 H 0.101 0.899 16 C -0.124 4.124 17 C 0.152 3.848 18 N -0.629 5.629 19 C -0.235 4.235 20 H 0.081 0.919 21 C -0.071 4.071 22 N -0.950 5.950 23 Si 0.979 3.021 24 H -0.266 1.266 25 H -0.293 1.293 26 H -0.292 1.292 27 C 0.137 3.863 28 N -0.308 5.308 29 H 0.063 0.937 30 H 0.124 0.876 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.125 0.875 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.126 0.874 37 H 0.049 0.951 38 H 0.155 0.845 39 H 0.159 0.841 40 H 0.420 0.580 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.059 0.941 44 H 0.088 0.912 45 H 0.069 0.931 46 H -0.008 1.008 47 H 0.246 0.754 48 H 0.034 0.966 49 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.713 28.487 -3.906 30.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.083 3.917 3 C -0.206 4.206 4 C -0.214 4.214 5 N -0.036 5.036 6 N -0.070 5.070 7 N -0.178 5.178 8 C -0.109 4.109 9 C -0.082 4.082 10 C 0.306 3.694 11 O -0.468 6.468 12 N -0.361 5.361 13 C 0.021 3.979 14 C -0.111 4.111 15 H 0.119 0.881 16 C -0.163 4.163 17 C 0.026 3.974 18 N -0.355 5.355 19 C -0.364 4.364 20 H 0.099 0.901 21 C -0.263 4.263 22 N -0.600 5.600 23 Si 0.808 3.192 24 H -0.190 1.190 25 H -0.220 1.220 26 H -0.219 1.219 27 C 0.012 3.988 28 N -0.158 5.158 29 H 0.082 0.918 30 H 0.142 0.858 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.143 0.857 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.145 0.855 37 H 0.069 0.931 38 H 0.172 0.828 39 H 0.177 0.823 40 H 0.257 0.743 41 H 0.089 0.911 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.107 0.893 45 H 0.087 0.913 46 H 0.010 0.990 47 H 0.056 0.944 48 H 0.052 0.948 49 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -10.049 29.243 -4.678 31.273 hybrid contribution -0.323 -1.982 0.214 2.019 sum -10.372 27.261 -4.464 29.507 Atomic orbital electron populations 1.22242 0.89031 1.04259 1.05460 1.21991 0.97530 0.93690 0.78522 1.22132 1.02321 0.90469 1.05721 1.22263 1.01433 1.01573 0.96161 1.50938 1.29037 1.05241 1.18343 1.78791 1.09500 1.22670 0.96056 1.75738 1.21166 0.99660 1.21220 1.25148 0.96215 0.97664 0.91873 1.20058 0.99876 0.86064 1.02171 1.20635 0.85884 0.81916 0.80990 1.90721 1.48776 1.73087 1.34208 1.45806 1.31262 1.15756 1.43275 1.21172 0.89484 0.89430 0.97803 1.22282 0.95607 0.92471 1.00756 0.88063 1.22851 0.96959 0.95326 1.01203 1.21721 0.85351 0.94451 0.95828 1.44837 1.10240 1.03072 1.77364 1.19495 0.94965 0.86175 1.35800 0.90101 1.25648 0.97666 1.00374 1.02662 1.70066 1.12647 1.21978 1.55290 0.84987 0.78100 0.79168 0.76953 1.19029 1.22035 1.21929 1.21534 0.95481 0.84227 0.97541 1.74520 1.24899 1.00102 1.16327 0.91765 0.85785 0.91547 0.92060 0.85712 0.91061 0.91977 0.85527 0.93144 0.82774 0.82345 0.74285 0.91060 0.93204 0.92233 0.89321 0.91288 0.99016 0.94420 0.94791 0.96174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.66 71.98 0.62 -0.63 16 2 C 0.16 2.10 1.30 3.61 0.00 2.11 16 3 C -0.15 -1.32 7.91 71.98 0.57 -0.75 16 4 C -0.16 -1.86 8.66 71.98 0.62 -1.24 16 5 N -0.12 -2.69 3.73 -152.39 -0.57 -3.26 16 6 N -0.08 -2.08 12.24 37.02 0.45 -1.62 16 7 N -0.31 -8.87 12.50 -51.26 -0.64 -9.51 16 8 C 0.17 4.44 6.86 138.55 0.95 5.39 16 9 C -0.04 -0.70 6.33 29.10 0.18 -0.51 16 10 C 0.52 13.10 7.82 87.66 0.69 13.79 16 11 O -0.59 -21.04 16.03 -3.03 -0.05 -21.09 16 12 N -0.71 -15.48 5.47 -463.05 -2.53 -18.01 16 13 C 0.15 3.97 5.02 86.38 0.43 4.40 16 14 C -0.09 -2.78 2.96 -9.61 -0.03 -2.81 16 15 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 16 C -0.12 -4.45 6.53 31.98 0.21 -4.24 16 17 C 0.15 7.38 5.89 86.86 0.51 7.89 16 18 N -0.63 -31.92 3.39 -691.98 -2.35 -34.27 16 19 C -0.24 -13.13 10.27 84.03 0.86 -12.27 16 20 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 21 C -0.07 -4.05 5.49 84.86 0.47 -3.59 16 22 N -0.95 -56.82 10.09 21.65 0.22 -56.60 16 23 Si 0.98 45.71 29.55 68.60 2.03 47.74 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 26 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 27 C 0.14 5.26 6.75 86.73 0.59 5.85 16 28 N -0.31 -7.76 11.83 -51.20 -0.61 -8.37 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.12 0.17 8.14 -2.38 -0.02 0.15 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.12 0.18 8.14 -2.39 -0.02 0.17 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.13 0.52 8.14 -2.38 -0.02 0.50 16 37 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.15 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.16 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.42 6.47 8.47 -92.71 -0.79 5.69 16 41 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.05 1.59 7.93 -2.39 -0.02 1.57 16 43 H 0.06 2.17 8.05 -2.39 -0.02 2.15 16 44 H 0.09 2.69 8.14 -2.38 -0.02 2.67 16 45 H 0.07 3.89 5.87 -2.38 -0.01 3.88 16 46 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 47 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 48 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.02 0.80 7.68 -2.39 -0.02 0.78 16 Total: -1.00 -82.75 401.03 2.80 -79.96 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.16 Total: 11.66 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: 6.68 Total: 13.39 kcal Atomic # 7 Polarization: -125.63 SS G_CDS: -6.02 Total: -131.65 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.05 Total: -21.09 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -82.75 2.80 -79.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713529107.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.715 kcal (2) G-P(sol) polarization free energy of solvation -82.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds