Wall clock time and date at job start Tue Mar 31 2020 19:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42908 * 114.00044 * 2 1 4 4 C 1.52999 * 109.47064 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46943 * 179.97438 * 4 3 2 6 6 C 1.34258 * 125.75138 * 125.00477 * 5 4 3 7 7 C 1.38043 * 107.41632 * 180.02562 * 6 5 4 8 8 C 1.47434 * 126.41431 * 179.97438 * 7 6 5 9 9 O 1.21605 * 119.99891 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99993 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00124 * 185.03210 * 10 8 7 12 12 C 1.52997 * 110.01289 * 62.42142 * 11 10 8 13 13 N 1.46499 * 109.47354 * 53.32993 * 12 11 10 14 14 C 1.36941 * 120.00603 * 174.87985 * 13 12 11 15 15 H 1.08001 * 119.99257 * 4.81050 * 14 13 12 16 16 C 1.38810 * 120.00149 * 184.81104 * 14 13 12 17 17 N 1.31622 * 119.99488 * 173.93185 * 16 14 13 18 18 Si 1.86796 * 120.00132 * 354.20995 * 16 14 13 19 19 H 1.48497 * 109.47223 * 94.18194 * 18 16 14 20 20 H 1.48498 * 109.46947 * 214.18032 * 18 16 14 21 21 H 1.48497 * 109.47006 * 334.17753 * 18 16 14 22 22 C 1.54262 * 110.07525 * 183.83812 * 11 10 8 23 23 C 1.54893 * 104.19434 * 95.69885 * 22 11 10 24 24 C 1.54880 * 102.74794 * 37.94473 * 23 22 11 25 25 C 1.53870 * 110.03402 * 301.03208 * 11 10 8 26 26 C 1.41283 * 107.17282 * 0.22461 * 7 6 5 27 27 N 1.30457 * 108.01982 * 359.61685 * 26 7 6 28 28 H 1.08998 * 109.47307 * 300.00291 * 1 2 3 29 29 H 1.09004 * 109.47020 * 59.99722 * 1 2 3 30 30 H 1.09000 * 109.47262 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46911 * 59.99652 * 3 2 1 32 32 H 1.08992 * 109.46852 * 299.99729 * 3 2 1 33 33 H 1.08999 * 109.47312 * 60.00177 * 4 3 2 34 34 H 1.08995 * 109.47154 * 300.00246 * 4 3 2 35 35 H 1.07997 * 126.29103 * 359.97438 * 6 5 4 36 36 H 0.97003 * 119.99780 * 5.04473 * 10 8 7 37 37 H 1.08996 * 109.47911 * 293.32629 * 12 11 10 38 38 H 1.09009 * 109.47230 * 173.32728 * 12 11 10 39 39 H 0.97000 * 119.99898 * 354.87931 * 13 12 11 40 40 H 0.97004 * 119.99433 * 179.97438 * 17 16 14 41 41 H 1.08994 * 110.49202 * 214.37870 * 22 11 10 42 42 H 1.09002 * 110.48558 * 337.02170 * 22 11 10 43 43 H 1.09004 * 110.75422 * 279.63031 * 23 22 11 44 44 H 1.09002 * 110.75152 * 156.25974 * 23 22 11 45 45 H 1.09009 * 110.48742 * 203.37776 * 24 23 22 46 46 H 1.09000 * 110.48676 * 80.73517 * 24 23 22 47 47 H 1.08998 * 110.03434 * 359.94918 * 25 11 10 48 48 H 1.09005 * 110.03292 * 121.38026 * 25 11 10 49 49 H 1.07999 * 125.99581 * 179.74113 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0210 2.9860 0.8926 7 6 5.3261 4.2844 0.5365 8 6 6.2609 5.1864 1.2337 9 8 6.8501 4.8027 2.2259 10 7 6.4632 6.4359 0.7708 11 6 7.4722 7.2944 1.3962 12 6 8.8606 6.6715 1.2375 13 7 9.1051 6.3770 -0.1766 14 6 10.3283 5.9096 -0.5772 15 1 11.0873 5.6844 0.1574 16 6 10.5927 5.7254 -1.9274 17 7 11.8034 5.3913 -2.3213 18 14 9.2323 5.9591 -3.1859 19 1 9.2775 7.3471 -3.7118 20 1 9.4218 4.9999 -4.3036 21 1 7.9160 5.7160 -2.5429 22 6 7.4457 8.6968 0.7543 23 6 6.5441 9.5299 1.6989 24 6 6.9366 9.0008 3.1006 25 6 7.1486 7.4876 2.8880 26 6 4.5704 4.5889 -0.6177 27 7 3.8687 3.5345 -0.9305 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8574 0.6436 -0.8891 34 1 3.8567 0.6439 0.8908 35 1 5.4234 2.4428 1.7348 36 1 5.9405 6.7669 0.0237 37 1 8.9132 5.7487 1.8152 38 1 9.6156 7.3698 1.5990 39 1 8.4004 6.5130 -0.8291 40 1 11.9880 5.2622 -3.2648 41 1 8.4503 9.1180 0.7161 42 1 7.0121 8.6510 -0.2447 43 1 5.4905 9.3390 1.4950 44 1 6.7696 10.5927 1.6101 45 1 6.1314 9.1767 3.8140 46 1 7.8590 9.4710 3.4414 47 1 6.2402 6.9434 3.1466 48 1 7.9807 7.1376 3.4990 49 1 4.5745 5.5290 -1.1493 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714148391.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:10 Heat of formation + Delta-G solvation = 10.699120 kcal Electronic energy + Delta-G solvation = -29727.475271 eV Core-core repulsion = 25691.892669 eV Total energy + Delta-G solvation = -4035.582602 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.47333 -39.86073 -38.41796 -37.33965 -34.40946 -34.20369 -33.06812 -31.23099 -30.52583 -29.61012 -28.63356 -28.13148 -26.69303 -24.60889 -23.86446 -22.93270 -21.79291 -20.88811 -20.65928 -20.08363 -18.94954 -18.02377 -17.51669 -16.92056 -16.70135 -15.94048 -15.84428 -15.61627 -15.01943 -14.94326 -14.54226 -14.36704 -14.29417 -14.02894 -13.79385 -13.53844 -13.19801 -12.99257 -12.80523 -12.62016 -12.44859 -12.09794 -12.01565 -11.82549 -11.76989 -11.34838 -11.07501 -10.98070 -10.92253 -10.87160 -10.66081 -10.51390 -10.35696 -10.21635 -10.08252 -9.72593 -9.55029 -9.43211 -8.81670 -8.73911 -8.50947 -7.09418 -5.69218 -3.01867 1.50747 1.99630 2.18287 3.32359 3.39660 3.41530 3.47951 3.51248 3.79375 4.22083 4.43690 4.60783 4.65313 4.68451 4.70177 4.79624 4.81605 4.86822 4.87470 5.02544 5.09882 5.19484 5.22471 5.23863 5.42752 5.45325 5.54869 5.63747 5.64855 5.71097 5.76794 5.83703 5.93474 5.96256 6.07376 6.21664 6.30421 6.38998 6.45984 6.51202 6.51984 6.57604 6.68567 6.90546 7.10046 7.41124 7.90828 8.10658 8.50232 8.66959 9.31173 10.03550 10.25260 11.49719 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009847 B = 0.003427 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2842.885561 B = 8167.301493 C =10031.221803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.390 6.390 3 C 0.052 3.948 4 C 0.135 3.865 5 N -0.364 5.364 6 C 0.130 3.870 7 C -0.282 4.282 8 C 0.601 3.399 9 O -0.540 6.540 10 N -0.713 5.713 11 C 0.168 3.832 12 C 0.151 3.849 13 N -0.750 5.750 14 C -0.233 4.233 15 H 0.088 0.912 16 C 0.001 3.999 17 N -0.936 5.936 18 Si 0.881 3.119 19 H -0.286 1.286 20 H -0.293 1.293 21 H -0.277 1.277 22 C -0.121 4.121 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.115 4.115 26 C 0.084 3.916 27 N -0.299 5.299 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.109 0.891 35 H 0.189 0.811 36 H 0.392 0.608 37 H 0.042 0.958 38 H 0.036 0.964 39 H 0.358 0.642 40 H 0.257 0.743 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.066 0.934 47 H 0.070 0.930 48 H 0.073 0.927 49 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.715 -1.539 8.046 25.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.309 6.309 3 C -0.026 4.026 4 C 0.013 3.987 5 N -0.145 5.145 6 C -0.020 4.020 7 C -0.297 4.297 8 C 0.389 3.611 9 O -0.418 6.418 10 N -0.363 5.363 11 C 0.083 3.917 12 C 0.023 3.977 13 N -0.395 5.395 14 C -0.363 4.363 15 H 0.106 0.894 16 C -0.194 4.194 17 N -0.585 5.585 18 Si 0.712 3.288 19 H -0.213 1.213 20 H -0.220 1.220 21 H -0.204 1.204 22 C -0.159 4.159 23 C -0.162 4.162 24 C -0.163 4.163 25 C -0.154 4.154 26 C -0.104 4.104 27 N -0.119 5.119 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.117 0.883 34 H 0.127 0.873 35 H 0.206 0.794 36 H 0.226 0.774 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.191 0.809 40 H 0.067 0.933 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.092 0.908 49 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -23.836 -2.709 7.945 25.271 hybrid contribution -0.691 0.710 -1.034 1.432 sum -24.527 -1.999 6.910 25.560 Atomic orbital electron populations 1.22777 0.79995 1.03102 1.00349 1.87787 1.20535 1.26931 1.95600 1.22650 0.92559 0.85310 1.02045 1.21468 0.92563 0.78830 1.05815 1.48253 1.33336 1.11975 1.20899 1.22969 0.90587 0.94255 0.94201 1.20383 1.09756 0.96513 1.03028 1.17021 0.80221 0.80789 0.83115 1.90744 1.49607 1.75476 1.25981 1.45841 1.40054 1.13963 1.36471 1.21285 0.88705 0.89417 0.92339 1.21115 0.91217 0.98151 0.87214 1.42576 1.13226 1.80699 1.02998 1.19067 0.89722 1.35131 0.92394 0.89391 1.24636 0.96048 1.02203 0.96494 1.69723 1.18667 1.55109 1.14988 0.86544 0.82633 0.77498 0.82112 1.21273 1.21961 1.20353 1.22639 1.01483 0.93465 0.98335 1.22521 0.99265 0.99191 0.95216 1.22399 1.01030 0.96019 0.96844 1.22399 1.02585 0.95326 0.95069 1.24062 0.93631 0.97764 0.94894 1.77117 1.24947 0.96696 1.13152 0.93830 0.93720 0.89169 0.92606 0.91470 0.88320 0.87271 0.79390 0.77412 0.94055 0.94571 0.80915 0.93267 0.89335 0.91384 0.91832 0.91629 0.92077 0.91526 0.91175 0.90819 0.79534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.35 10.70 -35.23 -0.38 -3.73 16 3 C 0.05 0.43 6.11 37.16 0.23 0.66 16 4 C 0.13 1.16 6.86 -4.04 -0.03 1.13 16 5 N -0.36 -4.28 3.65 -60.81 -0.22 -4.50 16 6 C 0.13 1.65 11.25 -16.56 -0.19 1.46 16 7 C -0.28 -4.12 6.13 -105.07 -0.64 -4.76 16 8 C 0.60 10.06 6.97 -12.52 -0.09 9.97 16 9 O -0.54 -10.52 14.12 5.27 0.07 -10.45 16 10 N -0.71 -10.75 4.39 -47.64 -0.21 -10.96 16 11 C 0.17 2.65 0.58 -130.71 -0.08 2.57 16 12 C 0.15 3.11 4.59 -4.04 -0.02 3.09 16 13 N -0.75 -18.15 5.10 -59.91 -0.31 -18.46 16 14 C -0.23 -6.80 10.47 -15.06 -0.16 -6.96 16 15 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 16 C 0.00 0.04 5.50 -17.43 -0.10 -0.06 16 17 N -0.94 -30.15 13.97 55.49 0.78 -29.38 16 18 Si 0.88 22.53 27.77 -169.99 -4.72 17.81 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 20 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 21 H -0.28 -6.60 6.49 56.52 0.37 -6.23 16 22 C -0.12 -1.65 5.82 -25.07 -0.15 -1.80 16 23 C -0.12 -1.35 6.91 -24.74 -0.17 -1.52 16 24 C -0.13 -1.41 6.83 -25.08 -0.17 -1.59 16 25 C -0.11 -1.62 5.17 -25.62 -0.13 -1.76 16 26 C 0.08 1.11 11.51 -16.98 -0.20 0.92 16 27 N -0.30 -4.02 12.33 30.86 0.38 -3.64 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.11 0.70 8.06 -51.93 -0.42 0.28 16 35 H 0.19 1.98 8.06 -52.49 -0.42 1.56 16 36 H 0.39 4.95 7.20 -40.82 -0.29 4.66 16 37 H 0.04 0.96 6.75 -51.93 -0.35 0.61 16 38 H 0.04 0.75 8.00 -51.92 -0.42 0.34 16 39 H 0.36 8.34 5.04 -40.82 -0.21 8.13 16 40 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 41 H 0.09 1.31 7.75 -51.93 -0.40 0.91 16 42 H 0.07 0.89 7.71 -51.93 -0.40 0.49 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.07 1.03 6.97 -51.93 -0.36 0.67 16 48 H 0.07 1.11 7.67 -51.93 -0.40 0.71 16 49 H 0.19 1.93 7.51 -52.49 -0.39 1.53 16 LS Contribution 396.94 15.07 5.98 5.98 Total: -1.00 -36.72 396.94 -7.28 -43.99 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -7.89 Total: 10.66 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -0.77 Total: 2.68 kcal Atomic # 7 Polarization: -67.36 SS G_CDS: 0.42 Total: -66.94 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.30 Total: -14.18 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.72 Total: 17.81 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.72 -7.28 -43.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714148391.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.694 kcal (2) G-P(sol) polarization free energy of solvation -36.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds