Wall clock time and date at job start Tue Mar 31 2020 19:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42908 * 114.00044 * 2 1 4 4 C 1.52999 * 109.47064 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46943 * 179.97438 * 4 3 2 6 6 C 1.34258 * 125.75138 * 125.00477 * 5 4 3 7 7 C 1.38043 * 107.41632 * 180.02562 * 6 5 4 8 8 C 1.47434 * 126.41431 * 179.97438 * 7 6 5 9 9 O 1.21605 * 119.99891 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99993 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00124 * 185.03210 * 10 8 7 12 12 C 1.52997 * 110.01289 * 62.42142 * 11 10 8 13 13 N 1.46499 * 109.47354 * 53.32993 * 12 11 10 14 14 C 1.36941 * 120.00603 * 174.87985 * 13 12 11 15 15 H 1.08001 * 119.99257 * 4.81050 * 14 13 12 16 16 C 1.38810 * 120.00149 * 184.81104 * 14 13 12 17 17 N 1.31622 * 119.99488 * 173.93185 * 16 14 13 18 18 Si 1.86796 * 120.00132 * 354.20995 * 16 14 13 19 19 H 1.48497 * 109.47223 * 94.18194 * 18 16 14 20 20 H 1.48498 * 109.46947 * 214.18032 * 18 16 14 21 21 H 1.48497 * 109.47006 * 334.17753 * 18 16 14 22 22 C 1.54262 * 110.07525 * 183.83812 * 11 10 8 23 23 C 1.54893 * 104.19434 * 95.69885 * 22 11 10 24 24 C 1.54880 * 102.74794 * 37.94473 * 23 22 11 25 25 C 1.53870 * 110.03402 * 301.03208 * 11 10 8 26 26 C 1.41283 * 107.17282 * 0.22461 * 7 6 5 27 27 N 1.30457 * 108.01982 * 359.61685 * 26 7 6 28 28 H 1.08998 * 109.47307 * 300.00291 * 1 2 3 29 29 H 1.09004 * 109.47020 * 59.99722 * 1 2 3 30 30 H 1.09000 * 109.47262 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46911 * 59.99652 * 3 2 1 32 32 H 1.08992 * 109.46852 * 299.99729 * 3 2 1 33 33 H 1.08999 * 109.47312 * 60.00177 * 4 3 2 34 34 H 1.08995 * 109.47154 * 300.00246 * 4 3 2 35 35 H 1.07997 * 126.29103 * 359.97438 * 6 5 4 36 36 H 0.97003 * 119.99780 * 5.04473 * 10 8 7 37 37 H 1.08996 * 109.47911 * 293.32629 * 12 11 10 38 38 H 1.09009 * 109.47230 * 173.32728 * 12 11 10 39 39 H 0.97000 * 119.99898 * 354.87931 * 13 12 11 40 40 H 0.97004 * 119.99433 * 179.97438 * 17 16 14 41 41 H 1.08994 * 110.49202 * 214.37870 * 22 11 10 42 42 H 1.09002 * 110.48558 * 337.02170 * 22 11 10 43 43 H 1.09004 * 110.75422 * 279.63031 * 23 22 11 44 44 H 1.09002 * 110.75152 * 156.25974 * 23 22 11 45 45 H 1.09009 * 110.48742 * 203.37776 * 24 23 22 46 46 H 1.09000 * 110.48676 * 80.73517 * 24 23 22 47 47 H 1.08998 * 110.03434 * 359.94918 * 25 11 10 48 48 H 1.09005 * 110.03292 * 121.38026 * 25 11 10 49 49 H 1.07999 * 125.99581 * 179.74113 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0210 2.9860 0.8926 7 6 5.3261 4.2844 0.5365 8 6 6.2609 5.1864 1.2337 9 8 6.8501 4.8027 2.2259 10 7 6.4632 6.4359 0.7708 11 6 7.4722 7.2944 1.3962 12 6 8.8606 6.6715 1.2375 13 7 9.1051 6.3770 -0.1766 14 6 10.3283 5.9096 -0.5772 15 1 11.0873 5.6844 0.1574 16 6 10.5927 5.7254 -1.9274 17 7 11.8034 5.3913 -2.3213 18 14 9.2323 5.9591 -3.1859 19 1 9.2775 7.3471 -3.7118 20 1 9.4218 4.9999 -4.3036 21 1 7.9160 5.7160 -2.5429 22 6 7.4457 8.6968 0.7543 23 6 6.5441 9.5299 1.6989 24 6 6.9366 9.0008 3.1006 25 6 7.1486 7.4876 2.8880 26 6 4.5704 4.5889 -0.6177 27 7 3.8687 3.5345 -0.9305 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8574 0.6436 -0.8891 34 1 3.8567 0.6439 0.8908 35 1 5.4234 2.4428 1.7348 36 1 5.9405 6.7669 0.0237 37 1 8.9132 5.7487 1.8152 38 1 9.6156 7.3698 1.5990 39 1 8.4004 6.5130 -0.8291 40 1 11.9880 5.2622 -3.2648 41 1 8.4503 9.1180 0.7161 42 1 7.0121 8.6510 -0.2447 43 1 5.4905 9.3390 1.4950 44 1 6.7696 10.5927 1.6101 45 1 6.1314 9.1767 3.8140 46 1 7.8590 9.4710 3.4414 47 1 6.2402 6.9434 3.1466 48 1 7.9807 7.1376 3.4990 49 1 4.5745 5.5290 -1.1493 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714148391.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:09 Heat of formation + Delta-G solvation = -16.208307 kcal Electronic energy + Delta-G solvation = -29728.642064 eV Core-core repulsion = 25691.892669 eV Total energy + Delta-G solvation = -4036.749395 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.46208 -41.09471 -39.03979 -38.56532 -36.28590 -35.09144 -34.35105 -33.30381 -31.52649 -30.62051 -29.69919 -29.44412 -27.27958 -26.28185 -24.65035 -24.08025 -23.61141 -21.80160 -21.71097 -21.16172 -20.41661 -19.49275 -18.99645 -17.67932 -17.37461 -17.21763 -16.66504 -16.46945 -16.44730 -16.25223 -15.81937 -15.59725 -15.44796 -15.08058 -15.04861 -14.83347 -14.55917 -14.31672 -14.06189 -13.80103 -13.68066 -13.57216 -13.08799 -12.85794 -12.77122 -12.58007 -12.37306 -12.24267 -12.12641 -11.97065 -11.91099 -11.87691 -11.82060 -11.67914 -11.34978 -11.01861 -10.80436 -10.66085 -10.65191 -10.01090 -9.65277 -9.24617 -8.02357 -5.34145 0.50005 1.14130 1.16243 1.33607 1.40226 1.47212 2.32385 2.48415 2.58507 2.71391 3.27355 3.45806 3.51742 3.71929 3.76785 3.82338 3.83431 3.89439 4.02554 4.12830 4.16051 4.27561 4.41691 4.43571 4.47341 4.53465 4.59883 4.60087 4.65377 4.72996 4.73733 4.81146 4.86967 4.92202 4.96218 5.12616 5.16018 5.23958 5.30160 5.34716 5.41370 5.55162 5.73944 5.74242 5.80293 6.00786 6.21061 6.43679 6.74211 7.09101 7.44247 7.84293 8.08736 9.19739 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009847 B = 0.003427 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2842.885561 B = 8167.301493 C =10031.221803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.060 3.940 4 C 0.128 3.872 5 N -0.358 5.358 6 C 0.134 3.866 7 C -0.311 4.311 8 C 0.596 3.404 9 O -0.578 6.578 10 N -0.706 5.706 11 C 0.173 3.827 12 C 0.151 3.849 13 N -0.743 5.743 14 C -0.231 4.231 15 H 0.046 0.954 16 C -0.066 4.066 17 N -0.986 5.986 18 Si 0.955 3.045 19 H -0.270 1.270 20 H -0.300 1.300 21 H -0.248 1.248 22 C -0.122 4.122 23 C -0.112 4.112 24 C -0.120 4.120 25 C -0.110 4.110 26 C 0.086 3.914 27 N -0.316 5.316 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.132 0.868 35 H 0.205 0.795 36 H 0.407 0.593 37 H 0.011 0.989 38 H 0.030 0.970 39 H 0.367 0.633 40 H 0.257 0.743 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.064 0.936 48 H 0.053 0.947 49 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.152 -0.399 7.444 28.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.325 6.325 3 C -0.017 4.017 4 C 0.008 3.992 5 N -0.137 5.137 6 C -0.018 4.018 7 C -0.326 4.326 8 C 0.385 3.615 9 O -0.459 6.459 10 N -0.357 5.357 11 C 0.087 3.913 12 C 0.024 3.976 13 N -0.389 5.389 14 C -0.362 4.362 15 H 0.064 0.936 16 C -0.257 4.257 17 N -0.636 5.636 18 Si 0.782 3.218 19 H -0.196 1.196 20 H -0.228 1.228 21 H -0.172 1.172 22 C -0.160 4.160 23 C -0.149 4.149 24 C -0.157 4.157 25 C -0.149 4.149 26 C -0.102 4.102 27 N -0.136 5.136 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.122 0.878 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.118 0.882 34 H 0.150 0.850 35 H 0.222 0.778 36 H 0.243 0.757 37 H 0.029 0.971 38 H 0.048 0.952 39 H 0.201 0.799 40 H 0.066 0.934 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.103 0.897 45 H 0.099 0.901 46 H 0.087 0.913 47 H 0.083 0.917 48 H 0.072 0.928 49 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -27.341 -1.547 7.349 28.354 hybrid contribution 0.442 0.227 -0.745 0.895 sum -26.899 -1.319 6.604 27.729 Atomic orbital electron populations 1.22972 0.78633 1.04285 1.00977 1.87761 1.22071 1.26952 1.95683 1.22510 0.92176 0.85300 1.01741 1.21740 0.92904 0.77509 1.07060 1.48464 1.32714 1.12515 1.20040 1.23277 0.90097 0.93992 0.94404 1.20356 1.10798 0.97130 1.04276 1.17397 0.80066 0.81288 0.82745 1.90724 1.51208 1.76248 1.27721 1.45764 1.39630 1.13564 1.36736 1.21180 0.85836 0.90265 0.94023 1.21171 0.94759 0.96949 0.84715 1.42435 1.11666 1.80166 1.04611 1.18986 0.90686 1.34661 0.91837 0.93621 1.25522 0.98870 1.02430 0.98848 1.69922 1.21413 1.56856 1.15458 0.85373 0.80178 0.77807 0.78460 1.19591 1.22758 1.17201 1.22642 1.01670 0.92049 0.99603 1.22486 0.99422 0.99617 0.93392 1.22391 1.01992 0.93350 0.97991 1.22319 1.01422 0.97702 0.93483 1.24450 0.92762 0.98631 0.94324 1.77089 1.25424 0.97169 1.13917 0.92989 0.93308 0.87797 0.92266 0.92393 0.88199 0.84973 0.77830 0.75694 0.97126 0.95168 0.79929 0.93429 0.90810 0.90197 0.90164 0.89729 0.90126 0.91281 0.91705 0.92824 0.77085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.41 -6.33 10.70 -148.98 -1.59 -7.92 16 3 C 0.06 0.90 6.11 71.98 0.44 1.34 16 4 C 0.13 1.98 6.86 86.38 0.59 2.57 16 5 N -0.36 -7.78 3.65 -346.31 -1.26 -9.05 16 6 C 0.13 3.23 11.25 84.28 0.95 4.18 16 7 C -0.31 -8.66 6.13 -20.15 -0.12 -8.79 16 8 C 0.60 19.57 6.97 86.67 0.60 20.18 16 9 O -0.58 -22.94 14.12 -4.05 -0.06 -22.99 16 10 N -0.71 -20.18 4.39 -422.88 -1.86 -22.03 16 11 C 0.17 5.29 0.58 4.32 0.00 5.29 16 12 C 0.15 6.40 4.59 86.38 0.40 6.79 16 13 N -0.74 -36.09 5.10 -343.45 -1.75 -37.84 16 14 C -0.23 -13.84 10.47 84.03 0.88 -12.96 16 15 H 0.05 3.06 8.06 -2.91 -0.02 3.04 16 16 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 17 N -0.99 -65.19 13.97 21.65 0.30 -64.89 16 18 Si 0.96 46.03 27.77 68.60 1.91 47.94 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 20 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 21 H -0.25 -10.59 6.49 99.48 0.65 -9.94 16 22 C -0.12 -3.01 5.82 31.67 0.18 -2.83 16 23 C -0.11 -2.00 6.91 31.88 0.22 -1.78 16 24 C -0.12 -2.40 6.83 31.67 0.22 -2.18 16 25 C -0.11 -3.04 5.17 31.32 0.16 -2.88 16 26 C 0.09 2.07 11.51 85.65 0.99 3.05 16 27 N -0.32 -7.87 12.33 -56.27 -0.69 -8.56 16 28 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.13 1.42 8.06 -2.39 -0.02 1.40 16 35 H 0.21 4.07 8.06 -2.91 -0.02 4.05 16 36 H 0.41 9.08 7.20 -92.71 -0.67 8.41 16 37 H 0.01 0.52 6.75 -2.39 -0.02 0.51 16 38 H 0.03 1.31 8.00 -2.38 -0.02 1.29 16 39 H 0.37 16.45 5.04 -92.71 -0.47 15.98 16 40 H 0.26 16.12 8.31 -92.71 -0.77 15.35 16 41 H 0.07 2.07 7.75 -2.39 -0.02 2.05 16 42 H 0.08 1.79 7.71 -2.39 -0.02 1.78 16 43 H 0.08 1.22 8.14 -2.38 -0.02 1.21 16 44 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.08 1.34 8.14 -2.38 -0.02 1.33 16 46 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.06 1.86 6.97 -2.39 -0.02 1.85 16 48 H 0.05 1.67 7.67 -2.38 -0.02 1.65 16 49 H 0.21 3.66 7.51 -2.91 -0.02 3.64 16 Total: -1.00 -82.15 396.94 1.98 -80.17 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: -0.24 Total: 35.20 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 7.22 Total: 9.98 kcal Atomic # 7 Polarization: -137.10 SS G_CDS: -5.26 Total: -142.37 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -1.65 Total: -30.91 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.91 Total: 47.94 kcal Total: -82.15 1.98 -80.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714148391.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.960 kcal (2) G-P(sol) polarization free energy of solvation -82.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds