Wall clock time and date at job start Tue Mar 31 2020 19:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46823 * 2 1 4 4 C 1.50692 * 109.47189 * 120.00162 * 2 1 3 5 5 N 1.31075 * 126.66584 * 300.17555 * 4 2 1 6 6 N 1.28833 * 107.99279 * 180.24487 * 5 4 2 7 7 N 1.28735 * 109.39977 * 359.74718 * 6 5 4 8 8 N 1.29017 * 108.80972 * 0.02562 * 7 6 5 9 9 C 1.46499 * 126.44168 * 179.97438 * 8 7 6 10 10 C 1.50705 * 109.47105 * 90.02012 * 9 8 7 11 11 O 1.21281 * 119.99892 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00046 * 180.02562 * 10 9 8 13 13 C 1.46494 * 120.00039 * 179.97438 * 12 10 9 14 14 H 1.09003 * 110.67701 * 328.23393 * 13 12 10 15 15 C 1.54961 * 110.76455 * 91.63448 * 13 12 10 16 16 C 1.54270 * 104.16191 * 156.22179 * 15 13 12 17 17 C 1.53869 * 106.63967 * 336.44607 * 16 15 13 18 18 C 1.54268 * 106.60115 * 359.97438 * 17 16 15 19 19 H 1.09001 * 110.48482 * 264.93365 * 18 17 16 20 20 C 1.53001 * 110.49168 * 142.28754 * 18 17 16 21 21 N 1.46497 * 109.46665 * 66.45212 * 20 18 17 22 22 C 1.36945 * 119.99808 * 180.02562 * 21 20 18 23 23 H 1.08005 * 119.99830 * 359.97438 * 22 21 20 24 24 C 1.38808 * 120.00000 * 180.02562 * 22 21 20 25 25 N 1.31616 * 120.00092 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99979 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47212 * 90.00101 * 26 24 22 28 28 H 1.48502 * 109.47379 * 209.99793 * 26 24 22 29 29 H 1.48501 * 109.47317 * 330.00148 * 26 24 22 30 30 H 1.08999 * 109.47144 * 299.99635 * 1 2 3 31 31 H 1.09002 * 109.47221 * 59.99821 * 1 2 3 32 32 H 1.09005 * 109.47086 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47144 * 240.00365 * 2 1 3 34 34 H 1.08994 * 109.47109 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47368 * 300.00090 * 3 2 1 36 36 H 1.08999 * 109.46962 * 60.00254 * 3 2 1 37 37 H 1.08996 * 109.47014 * 330.02149 * 9 8 7 38 38 H 1.08995 * 109.47133 * 210.02131 * 9 8 7 39 39 H 0.97000 * 119.99722 * 0.02562 * 12 10 9 40 40 H 1.08997 * 110.47708 * 37.56776 * 15 13 12 41 41 H 1.09002 * 110.53308 * 274.90168 * 15 13 12 42 42 H 1.09002 * 110.03399 * 217.13605 * 16 15 13 43 43 H 1.08995 * 110.02943 * 95.75505 * 16 15 13 44 44 H 1.08999 * 110.03405 * 119.26051 * 17 16 15 45 45 H 1.08996 * 110.03529 * 240.68999 * 17 16 15 46 46 H 1.08997 * 109.47502 * 186.45464 * 20 18 17 47 47 H 1.09000 * 109.46777 * 306.45746 * 20 18 17 48 48 H 0.96996 * 120.00581 * 0.02562 * 21 20 18 49 49 H 0.97003 * 120.00222 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7950 -0.3803 2.4765 6 7 2.4016 -1.2269 3.2349 7 7 3.0154 -2.0917 2.5050 8 7 2.8096 -1.8088 1.2631 9 6 3.3290 -2.5420 0.1060 10 6 2.3501 -3.6183 -0.2873 11 8 1.3203 -3.7592 0.3377 12 7 2.6195 -4.4248 -1.3330 13 6 1.6682 -5.4713 -1.7150 14 1 1.1400 -5.8494 -0.8397 15 6 0.6705 -4.9455 -2.7778 16 6 0.1842 -6.2183 -3.5012 17 6 1.2756 -7.2840 -3.2996 18 6 2.3884 -6.6221 -2.4609 19 1 3.1702 -6.2262 -3.1091 20 6 2.9742 -7.6230 -1.4630 21 7 3.6743 -8.6847 -2.1903 22 6 4.2823 -9.7003 -1.5017 23 1 4.2461 -9.7183 -0.4224 24 6 4.9461 -10.7060 -2.1908 25 7 4.9906 -10.6838 -3.5060 26 14 5.7761 -12.0909 -1.2515 27 1 4.8121 -13.2033 -1.0552 28 1 6.9465 -12.5807 -2.0232 29 1 6.2296 -11.5899 0.0709 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 4.2852 -2.9972 0.3637 38 1 3.4670 -1.8540 -0.7280 39 1 3.4436 -4.3127 -1.8322 40 1 1.1746 -4.2784 -3.4769 41 1 -0.1655 -4.4362 -2.2984 42 1 0.0515 -6.0161 -4.5641 43 1 -0.7553 -6.5591 -3.0662 44 1 0.8660 -8.1417 -2.7660 45 1 1.6727 -7.5991 -4.2645 46 1 3.6752 -7.1110 -0.8038 47 1 2.1697 -8.0582 -0.8703 48 1 3.7071 -8.6684 -3.1596 49 1 5.4541 -11.3867 -3.9876 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716070764.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:17 Heat of formation + Delta-G solvation = 74.483592 kcal Electronic energy + Delta-G solvation = -29448.980870 eV Core-core repulsion = 25448.456921 eV Total energy + Delta-G solvation = -4000.523948 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.40117 -40.36316 -38.31443 -36.54503 -35.60900 -34.62646 -33.93960 -31.72926 -31.49024 -29.84246 -28.66297 -27.66705 -27.38410 -24.71442 -24.60257 -23.62891 -22.27815 -21.55108 -20.86773 -20.66707 -19.64806 -18.15757 -18.08957 -17.14452 -16.67910 -16.42041 -16.02104 -15.70490 -15.03479 -14.90900 -14.60503 -14.48987 -13.86195 -13.70915 -13.68150 -13.45580 -13.24698 -13.14798 -12.96719 -12.65398 -12.41490 -12.32313 -12.13744 -12.05007 -11.80111 -11.62198 -11.57766 -11.39742 -11.19732 -11.09118 -10.99499 -10.81756 -10.66984 -10.52622 -10.34516 -10.24750 -10.12372 -10.03620 -9.77771 -9.26876 -8.93138 -6.98584 -5.82546 -3.11247 0.95799 1.53110 2.05757 2.08604 2.74863 3.40231 3.46073 3.47132 3.51870 3.78451 4.02962 4.09303 4.33906 4.46702 4.49726 4.61510 4.62415 4.67926 4.78013 4.88915 5.15195 5.17382 5.28966 5.29834 5.37236 5.42034 5.42748 5.46282 5.49718 5.53402 5.57647 5.68198 5.72456 5.75645 5.80681 5.85032 5.94284 5.98869 6.09531 6.19101 6.28051 6.43486 6.50301 6.66495 6.78604 7.07607 7.65545 7.73087 8.36506 8.43272 9.48160 10.04554 10.39529 11.40206 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015272 B = 0.002481 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.039214 B =11281.705652 C =12553.567909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.010 4.010 3 C -0.144 4.144 4 C 0.200 3.800 5 N -0.301 5.301 6 N -0.073 5.073 7 N -0.082 5.082 8 N -0.294 5.294 9 C 0.090 3.910 10 C 0.501 3.499 11 O -0.519 6.519 12 N -0.706 5.706 13 C 0.145 3.855 14 H 0.100 0.900 15 C -0.131 4.131 16 C -0.123 4.123 17 C -0.112 4.112 18 C -0.101 4.101 19 H 0.080 0.920 20 C 0.161 3.839 21 N -0.730 5.730 22 C -0.240 4.240 23 H 0.069 0.931 24 C -0.013 4.013 25 N -0.934 5.934 26 Si 0.906 3.094 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.146 0.854 38 H 0.139 0.861 39 H 0.405 0.595 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.017 0.983 47 H 0.020 0.980 48 H 0.384 0.616 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.767 24.311 -1.730 25.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 C -0.202 4.202 4 C -0.078 4.078 5 N -0.149 5.149 6 N -0.067 5.067 7 N -0.067 5.067 8 N -0.094 5.094 9 C -0.036 4.036 10 C 0.284 3.716 11 O -0.394 6.394 12 N -0.357 5.357 13 C 0.040 3.960 14 H 0.118 0.882 15 C -0.169 4.169 16 C -0.161 4.161 17 C -0.150 4.150 18 C -0.120 4.120 19 H 0.098 0.902 20 C 0.033 3.967 21 N -0.375 5.375 22 C -0.371 4.371 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.582 5.582 26 Si 0.737 3.263 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.207 1.207 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.163 0.837 38 H 0.157 0.843 39 H 0.240 0.760 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.035 0.965 47 H 0.038 0.962 48 H 0.218 0.782 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.325 23.919 0.317 25.018 hybrid contribution 1.060 -1.045 -1.085 1.842 sum -6.265 22.874 -0.769 23.729 Atomic orbital electron populations 1.21831 0.91718 1.03285 1.03400 1.19783 0.97892 0.95999 0.89509 1.21855 1.01239 0.93403 1.03733 1.26074 0.94783 0.88915 0.97996 1.74940 1.19727 1.21918 0.98329 1.78617 1.06765 0.98953 1.22371 1.78937 1.20072 1.20571 0.87153 1.47857 1.34678 1.20021 1.06869 1.22026 0.99537 0.95668 0.86400 1.20235 0.87290 0.82978 0.81135 1.90825 1.26219 1.70175 1.52225 1.45857 1.24320 1.33904 1.31608 1.22196 0.89433 0.86288 0.98039 0.88167 1.22707 0.98778 0.98004 0.97460 1.22101 0.98991 0.94832 1.00143 1.22069 0.94548 0.97873 1.00553 1.22424 0.97591 0.94693 0.97336 0.90199 1.20680 0.94293 0.88859 0.92863 1.42314 1.63869 1.25345 1.05940 1.19225 1.26111 1.00701 0.91081 0.91268 1.24723 1.01430 0.99181 0.95544 1.69651 1.48130 1.35178 1.05290 0.86201 0.78900 0.82437 0.78731 1.21672 1.21742 1.20748 0.91029 0.90903 0.91861 0.89192 0.92353 0.90753 0.90908 0.83660 0.84316 0.75981 0.91386 0.91549 0.91754 0.91816 0.90821 0.91096 0.96536 0.96213 0.78244 0.93506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.18 37.16 0.34 -0.65 16 2 C -0.01 -0.07 3.26 -91.78 -0.30 -0.36 16 3 C -0.14 -0.71 9.18 37.16 0.34 -0.37 16 4 C 0.20 2.13 6.64 -155.43 -1.03 1.10 16 5 N -0.30 -4.12 12.36 32.70 0.40 -3.72 16 6 N -0.07 -1.14 13.43 60.35 0.81 -0.33 16 7 N -0.08 -1.18 13.29 60.35 0.80 -0.38 16 8 N -0.29 -3.22 2.83 -59.44 -0.17 -3.38 16 9 C 0.09 0.60 6.57 -5.19 -0.03 0.57 16 10 C 0.50 5.07 7.90 -10.98 -0.09 4.98 16 11 O -0.52 -7.77 16.07 5.56 0.09 -7.68 16 12 N -0.71 -6.29 5.18 -51.84 -0.27 -6.56 16 13 C 0.14 1.67 2.69 -65.90 -0.18 1.50 16 14 H 0.10 1.42 7.46 -51.93 -0.39 1.03 16 15 C -0.13 -1.29 6.52 -25.03 -0.16 -1.46 16 16 C -0.12 -1.30 6.80 -25.61 -0.17 -1.48 16 17 C -0.11 -1.53 6.05 -25.62 -0.15 -1.68 16 18 C -0.10 -1.39 2.56 -88.95 -0.23 -1.61 16 19 H 0.08 1.05 8.02 -51.93 -0.42 0.63 16 20 C 0.16 3.02 5.57 -4.04 -0.02 2.99 16 21 N -0.73 -17.54 5.44 -59.91 -0.33 -17.86 16 22 C -0.24 -6.57 9.99 -15.06 -0.15 -6.73 16 23 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -27.49 13.06 55.49 0.72 -26.76 16 26 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 29 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.38 6.84 -51.93 -0.36 0.02 16 34 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.15 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.14 0.29 7.12 -51.93 -0.37 -0.08 16 39 H 0.41 2.47 8.57 -40.82 -0.35 2.12 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 1.14 7.77 -51.93 -0.40 0.74 16 45 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.02 0.40 8.05 -51.93 -0.42 -0.02 16 48 H 0.38 9.59 7.52 -40.82 -0.31 9.28 16 49 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 404.27 15.07 6.09 6.09 Total: -1.00 -36.44 404.27 -6.85 -43.29 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -8.05 Total: 3.82 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -1.94 Total: -3.66 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: 1.98 Total: -59.00 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: 0.09 Total: -7.68 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.44 -6.85 -43.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716070764.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.775 kcal (2) G-P(sol) polarization free energy of solvation -36.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds