Wall clock time and date at job start Tue Mar 31 2020 19:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46823 * 2 1 4 4 C 1.50692 * 109.47189 * 120.00162 * 2 1 3 5 5 N 1.31075 * 126.66584 * 300.17555 * 4 2 1 6 6 N 1.28833 * 107.99279 * 180.24487 * 5 4 2 7 7 N 1.28735 * 109.39977 * 359.74718 * 6 5 4 8 8 N 1.29017 * 108.80972 * 0.02562 * 7 6 5 9 9 C 1.46499 * 126.44168 * 179.97438 * 8 7 6 10 10 C 1.50705 * 109.47105 * 90.02012 * 9 8 7 11 11 O 1.21281 * 119.99892 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00046 * 180.02562 * 10 9 8 13 13 C 1.46494 * 120.00039 * 179.97438 * 12 10 9 14 14 H 1.09003 * 110.67701 * 328.23393 * 13 12 10 15 15 C 1.54961 * 110.76455 * 91.63448 * 13 12 10 16 16 C 1.54270 * 104.16191 * 156.22179 * 15 13 12 17 17 C 1.53869 * 106.63967 * 336.44607 * 16 15 13 18 18 C 1.54268 * 106.60115 * 359.97438 * 17 16 15 19 19 H 1.09001 * 110.48482 * 264.93365 * 18 17 16 20 20 C 1.53001 * 110.49168 * 142.28754 * 18 17 16 21 21 N 1.46497 * 109.46665 * 66.45212 * 20 18 17 22 22 C 1.36945 * 119.99808 * 180.02562 * 21 20 18 23 23 H 1.08005 * 119.99830 * 359.97438 * 22 21 20 24 24 C 1.38808 * 120.00000 * 180.02562 * 22 21 20 25 25 N 1.31616 * 120.00092 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99979 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47212 * 90.00101 * 26 24 22 28 28 H 1.48502 * 109.47379 * 209.99793 * 26 24 22 29 29 H 1.48501 * 109.47317 * 330.00148 * 26 24 22 30 30 H 1.08999 * 109.47144 * 299.99635 * 1 2 3 31 31 H 1.09002 * 109.47221 * 59.99821 * 1 2 3 32 32 H 1.09005 * 109.47086 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47144 * 240.00365 * 2 1 3 34 34 H 1.08994 * 109.47109 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47368 * 300.00090 * 3 2 1 36 36 H 1.08999 * 109.46962 * 60.00254 * 3 2 1 37 37 H 1.08996 * 109.47014 * 330.02149 * 9 8 7 38 38 H 1.08995 * 109.47133 * 210.02131 * 9 8 7 39 39 H 0.97000 * 119.99722 * 0.02562 * 12 10 9 40 40 H 1.08997 * 110.47708 * 37.56776 * 15 13 12 41 41 H 1.09002 * 110.53308 * 274.90168 * 15 13 12 42 42 H 1.09002 * 110.03399 * 217.13605 * 16 15 13 43 43 H 1.08995 * 110.02943 * 95.75505 * 16 15 13 44 44 H 1.08999 * 110.03405 * 119.26051 * 17 16 15 45 45 H 1.08996 * 110.03529 * 240.68999 * 17 16 15 46 46 H 1.08997 * 109.47502 * 186.45464 * 20 18 17 47 47 H 1.09000 * 109.46777 * 306.45746 * 20 18 17 48 48 H 0.96996 * 120.00581 * 0.02562 * 21 20 18 49 49 H 0.97003 * 120.00222 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7950 -0.3803 2.4765 6 7 2.4016 -1.2269 3.2349 7 7 3.0154 -2.0917 2.5050 8 7 2.8096 -1.8088 1.2631 9 6 3.3290 -2.5420 0.1060 10 6 2.3501 -3.6183 -0.2873 11 8 1.3203 -3.7592 0.3377 12 7 2.6195 -4.4248 -1.3330 13 6 1.6682 -5.4713 -1.7150 14 1 1.1400 -5.8494 -0.8397 15 6 0.6705 -4.9455 -2.7778 16 6 0.1842 -6.2183 -3.5012 17 6 1.2756 -7.2840 -3.2996 18 6 2.3884 -6.6221 -2.4609 19 1 3.1702 -6.2262 -3.1091 20 6 2.9742 -7.6230 -1.4630 21 7 3.6743 -8.6847 -2.1903 22 6 4.2823 -9.7003 -1.5017 23 1 4.2461 -9.7183 -0.4224 24 6 4.9461 -10.7060 -2.1908 25 7 4.9906 -10.6838 -3.5060 26 14 5.7761 -12.0909 -1.2515 27 1 4.8121 -13.2033 -1.0552 28 1 6.9465 -12.5807 -2.0232 29 1 6.2296 -11.5899 0.0709 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 4.2852 -2.9972 0.3637 38 1 3.4670 -1.8540 -0.7280 39 1 3.4436 -4.3127 -1.8322 40 1 1.1746 -4.2784 -3.4769 41 1 -0.1655 -4.4362 -2.2984 42 1 0.0515 -6.0161 -4.5641 43 1 -0.7553 -6.5591 -3.0662 44 1 0.8660 -8.1417 -2.7660 45 1 1.6727 -7.5991 -4.2645 46 1 3.6752 -7.1110 -0.8038 47 1 2.1697 -8.0582 -0.8703 48 1 3.7071 -8.6684 -3.1596 49 1 5.4541 -11.3867 -3.9876 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716070764.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:15 Heat of formation + Delta-G solvation = 47.805315 kcal Electronic energy + Delta-G solvation = -29450.137727 eV Core-core repulsion = 25448.456921 eV Total energy + Delta-G solvation = -4001.680805 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -45.29954 -41.25182 -39.36302 -37.15869 -36.48439 -36.27883 -34.94823 -33.31965 -32.56009 -30.65528 -30.14576 -28.29870 -28.10023 -26.31865 -25.48092 -24.62633 -23.88490 -22.33402 -21.67413 -21.52518 -20.71902 -19.39261 -18.88345 -18.73547 -17.58515 -17.31512 -16.76247 -16.67050 -16.41057 -16.04238 -15.52679 -15.41081 -15.19475 -14.98311 -14.74918 -14.51901 -14.29267 -14.18611 -13.82926 -13.55756 -13.22660 -13.17633 -13.12311 -13.08377 -12.83442 -12.68848 -12.50464 -12.38774 -12.28957 -12.27424 -12.17179 -12.06780 -11.90166 -11.88363 -11.66346 -11.61872 -11.26420 -11.23607 -10.98040 -10.94559 -10.16420 -9.01218 -7.97780 -5.25597 0.09559 0.83608 1.13192 1.30373 1.45826 1.46705 1.54985 1.99334 2.53503 2.88471 3.15489 3.33735 3.36474 3.51190 3.60200 3.66563 3.87630 3.90952 4.02889 4.06513 4.19551 4.19601 4.37866 4.42381 4.47327 4.48359 4.51802 4.64589 4.66936 4.71789 4.78884 4.85043 4.91767 4.94717 4.96318 5.03460 5.11237 5.15169 5.15892 5.26842 5.29997 5.31577 5.37125 5.45996 5.49481 5.54705 6.25278 6.34652 7.01571 7.32677 7.48374 8.07564 8.32690 9.25173 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015272 B = 0.002481 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.039214 B =11281.705652 C =12553.567909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.010 4.010 3 C -0.140 4.140 4 C 0.209 3.791 5 N -0.330 5.330 6 N -0.109 5.109 7 N -0.108 5.108 8 N -0.291 5.291 9 C 0.085 3.915 10 C 0.503 3.497 11 O -0.573 6.573 12 N -0.693 5.693 13 C 0.153 3.847 14 H 0.069 0.931 15 C -0.118 4.118 16 C -0.115 4.115 17 C -0.113 4.113 18 C -0.089 4.089 19 H 0.096 0.904 20 C 0.161 3.839 21 N -0.738 5.738 22 C -0.247 4.247 23 H 0.067 0.933 24 C -0.069 4.069 25 N -0.964 5.964 26 Si 0.967 3.033 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.273 1.273 30 H 0.054 0.946 31 H 0.103 0.897 32 H 0.039 0.961 33 H 0.125 0.875 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.053 0.947 37 H 0.169 0.831 38 H 0.197 0.803 39 H 0.423 0.577 40 H 0.095 0.905 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.044 0.956 45 H 0.064 0.936 46 H 0.017 0.983 47 H 0.003 0.997 48 H 0.378 0.622 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.098 26.294 -3.793 27.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.032 4.032 3 C -0.198 4.198 4 C -0.069 4.069 5 N -0.179 5.179 6 N -0.102 5.102 7 N -0.094 5.094 8 N -0.092 5.092 9 C -0.038 4.038 10 C 0.287 3.713 11 O -0.452 6.452 12 N -0.344 5.344 13 C 0.047 3.953 14 H 0.087 0.913 15 C -0.156 4.156 16 C -0.153 4.153 17 C -0.151 4.151 18 C -0.108 4.108 19 H 0.114 0.886 20 C 0.034 3.966 21 N -0.381 5.381 22 C -0.379 4.379 23 H 0.085 0.915 24 C -0.261 4.261 25 N -0.614 5.614 26 Si 0.797 3.203 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.198 1.198 30 H 0.073 0.927 31 H 0.121 0.879 32 H 0.058 0.942 33 H 0.143 0.857 34 H 0.083 0.917 35 H 0.120 0.880 36 H 0.072 0.928 37 H 0.186 0.814 38 H 0.214 0.786 39 H 0.261 0.739 40 H 0.114 0.886 41 H 0.085 0.915 42 H 0.103 0.897 43 H 0.080 0.920 44 H 0.063 0.937 45 H 0.082 0.918 46 H 0.035 0.965 47 H 0.021 0.979 48 H 0.210 0.790 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.635 25.922 -1.748 26.815 hybrid contribution 0.799 -1.680 -0.459 1.917 sum -5.836 24.241 -2.208 25.031 Atomic orbital electron populations 1.21822 0.92131 1.01932 1.04123 1.20143 0.97439 0.96939 0.88671 1.21856 1.01635 0.92144 1.04174 1.26858 0.93277 0.88388 0.98338 1.74845 1.20635 1.22542 0.99888 1.78567 1.08006 0.99943 1.23709 1.78821 1.20803 1.20923 0.88805 1.48113 1.34319 1.20091 1.06701 1.22543 0.98682 0.95882 0.86741 1.20746 0.87004 0.83227 0.80292 1.90823 1.28759 1.71737 1.53886 1.45678 1.24518 1.32731 1.31520 1.21883 0.89828 0.86360 0.97214 0.91266 1.22633 0.98276 0.97775 0.96951 1.22056 0.97642 0.94066 1.01580 1.22020 0.95478 0.98015 0.99614 1.22266 0.97953 0.94135 0.96445 0.88611 1.20788 0.93331 0.88667 0.93781 1.42453 1.63960 1.25927 1.05784 1.19550 1.25615 1.01493 0.91275 0.91490 1.25457 1.02705 1.01568 0.96416 1.69779 1.49251 1.35913 1.06503 0.85236 0.77704 0.79576 0.77819 1.21640 1.21773 1.19833 0.92668 0.87867 0.94158 0.85699 0.91695 0.88029 0.92764 0.81377 0.78562 0.73851 0.88649 0.91533 0.89742 0.91978 0.93714 0.91761 0.96497 0.97909 0.78966 0.93874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.18 71.98 0.66 -1.02 16 2 C -0.01 -0.10 3.26 -11.54 -0.04 -0.14 16 3 C -0.14 -0.95 9.18 71.98 0.66 -0.29 16 4 C 0.21 4.18 6.64 138.13 0.92 5.09 16 5 N -0.33 -9.21 12.36 -50.45 -0.62 -9.83 16 6 N -0.11 -3.49 13.43 37.01 0.50 -3.00 16 7 N -0.11 -3.11 13.29 37.02 0.49 -2.62 16 8 N -0.29 -5.93 2.83 -341.98 -0.97 -6.89 16 9 C 0.09 0.85 6.57 85.63 0.56 1.41 16 10 C 0.50 9.02 7.90 87.66 0.69 9.71 16 11 O -0.57 -16.85 16.07 -3.03 -0.05 -16.90 16 12 N -0.69 -10.38 5.18 -436.31 -2.26 -12.64 16 13 C 0.15 3.29 2.69 46.31 0.12 3.41 16 14 H 0.07 1.98 7.46 -2.39 -0.02 1.96 16 15 C -0.12 -1.98 6.52 31.70 0.21 -1.77 16 16 C -0.12 -2.22 6.80 31.32 0.21 -2.01 16 17 C -0.11 -3.02 6.05 31.32 0.19 -2.83 16 18 C -0.09 -2.34 2.56 -9.72 -0.02 -2.36 16 19 H 0.10 2.27 8.02 -2.39 -0.02 2.25 16 20 C 0.16 6.08 5.57 86.38 0.48 6.56 16 21 N -0.74 -35.76 5.44 -343.45 -1.87 -37.63 16 22 C -0.25 -13.64 9.99 84.03 0.84 -12.80 16 23 H 0.07 3.65 7.83 -2.91 -0.02 3.62 16 24 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 25 N -0.96 -57.13 13.06 21.65 0.28 -56.84 16 26 Si 0.97 45.67 29.55 68.60 2.03 47.69 16 27 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 28 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 29 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.04 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.13 0.38 6.84 -2.39 -0.02 0.37 16 34 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 36 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.17 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.20 -0.39 7.12 -2.39 -0.02 -0.40 16 39 H 0.42 3.42 8.57 -92.71 -0.79 2.62 16 40 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.04 1.43 7.77 -2.39 -0.02 1.42 16 45 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.00 0.12 8.05 -2.39 -0.02 0.10 16 48 H 0.38 19.04 7.52 -92.71 -0.70 18.35 16 49 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -84.25 404.27 2.96 -81.29 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -0.52 Total: 17.81 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: 5.95 Total: -0.44 kcal Atomic # 7 Polarization: -125.00 SS G_CDS: -4.45 Total: -129.45 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.05 Total: -16.90 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -84.25 2.96 -81.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716070764.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.096 kcal (2) G-P(sol) polarization free energy of solvation -84.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds