Wall clock time and date at job start Tue Mar 31 2020 19:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46902 * 2 1 4 4 C 1.50695 * 109.47331 * 120.00109 * 2 1 3 5 5 N 1.31070 * 126.66298 * 300.17169 * 4 2 1 6 6 N 1.28840 * 107.99264 * 180.24351 * 5 4 2 7 7 N 1.28743 * 109.39605 * 359.75425 * 6 5 4 8 8 N 1.29022 * 108.80816 * 359.97438 * 7 6 5 9 9 C 1.46500 * 126.43603 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.47148 * 90.02400 * 9 8 7 11 11 O 1.21282 * 120.00090 * 359.97438 * 10 9 8 12 12 N 1.34771 * 119.99845 * 179.97438 * 10 9 8 13 13 C 1.46506 * 120.00040 * 179.97438 * 12 10 9 14 14 H 1.09001 * 110.53465 * 36.15895 * 13 12 10 15 15 C 1.54266 * 110.48818 * 273.54848 * 13 12 10 16 16 C 1.53872 * 106.59640 * 217.70889 * 15 13 12 17 17 C 1.54266 * 106.60044 * 359.97438 * 16 15 13 18 18 C 1.54887 * 110.48485 * 158.76961 * 13 12 10 19 19 H 1.09000 * 110.75698 * 38.31266 * 18 13 12 20 20 C 1.53001 * 110.75563 * 274.93505 * 18 13 12 21 21 N 1.46501 * 109.46614 * 175.00283 * 20 18 13 22 22 C 1.36942 * 119.99828 * 180.02562 * 21 20 18 23 23 H 1.08003 * 119.99818 * 359.97438 * 22 21 20 24 24 C 1.38814 * 120.00208 * 180.02562 * 22 21 20 25 25 N 1.31622 * 119.99673 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00149 * 179.97438 * 24 22 21 27 27 H 1.48510 * 109.46979 * 89.99764 * 26 24 22 28 28 H 1.48497 * 109.47278 * 209.99770 * 26 24 22 29 29 H 1.48501 * 109.47277 * 330.00090 * 26 24 22 30 30 H 1.09000 * 109.47154 * 299.99440 * 1 2 3 31 31 H 1.09002 * 109.46871 * 59.99930 * 1 2 3 32 32 H 1.09004 * 109.46665 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47154 * 240.00560 * 2 1 3 34 34 H 1.09003 * 109.46986 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47350 * 300.00520 * 3 2 1 36 36 H 1.09000 * 109.47160 * 59.99957 * 3 2 1 37 37 H 1.08998 * 109.46945 * 330.02569 * 9 8 7 38 38 H 1.08999 * 109.46954 * 210.02397 * 9 8 7 39 39 H 0.97005 * 120.00351 * 0.02562 * 12 10 9 40 40 H 1.09003 * 110.03179 * 336.99661 * 15 13 12 41 41 H 1.09005 * 110.03005 * 98.42401 * 15 13 12 42 42 H 1.09002 * 110.03208 * 119.28196 * 16 15 13 43 43 H 1.09000 * 110.03462 * 240.66592 * 16 15 13 44 44 H 1.09002 * 110.48438 * 142.28717 * 17 16 15 45 45 H 1.08998 * 110.48431 * 264.79545 * 17 16 15 46 46 H 1.09000 * 109.47234 * 295.00059 * 20 18 13 47 47 H 1.08996 * 109.46795 * 55.00568 * 20 18 13 48 48 H 0.96997 * 120.00825 * 0.02562 * 21 20 18 49 49 H 0.97002 * 119.99547 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7951 -0.3803 2.4764 6 7 2.4017 -1.2269 3.2349 7 7 3.0156 -2.0916 2.5049 8 7 2.8089 -1.8093 1.2631 9 6 3.3280 -2.5428 0.1060 10 6 2.3494 -3.6196 -0.2864 11 8 1.3201 -3.7609 0.3391 12 7 2.6183 -4.4257 -1.3325 13 6 1.6673 -5.4730 -1.7137 14 1 0.6428 -5.1307 -1.5675 15 6 1.9275 -6.7596 -0.9034 16 6 1.6902 -7.9389 -1.8629 17 6 1.2933 -7.3277 -3.2226 18 6 1.8916 -5.8992 -3.1858 19 1 2.9549 -5.9190 -3.4244 20 6 1.1372 -4.9710 -4.1399 21 7 1.4630 -5.3242 -5.5239 22 6 0.9023 -4.6248 -6.5591 23 1 0.2196 -3.8131 -6.3553 24 6 1.2105 -4.9597 -7.8705 25 7 2.0421 -5.9492 -8.1189 26 14 0.4451 -4.0061 -9.2826 27 1 1.3169 -2.8561 -9.6334 28 1 0.3027 -4.8972 -10.4620 29 1 -0.8928 -3.5068 -8.8751 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9564 0.8900 37 1 4.2846 -2.9974 0.3634 38 1 3.4653 -1.8550 -0.7284 39 1 3.4418 -4.3131 -1.8326 40 1 2.9562 -6.7724 -0.5432 41 1 1.2363 -6.8175 -0.0624 42 1 2.6037 -8.5240 -1.9685 43 1 0.8844 -8.5696 -1.4873 44 1 1.7284 -7.9020 -4.0405 45 1 0.2085 -7.2875 -3.3207 46 1 0.0645 -5.0796 -3.9801 47 1 1.4303 -3.9385 -3.9498 48 1 2.0758 -6.0534 -5.7071 49 1 2.2572 -6.1835 -9.0353 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716070765.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:21 Heat of formation + Delta-G solvation = 74.330030 kcal Electronic energy + Delta-G solvation = -29586.582643 eV Core-core repulsion = 25586.052036 eV Total energy + Delta-G solvation = -4000.530607 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.38763 -40.37207 -38.29898 -36.46038 -35.59191 -34.63719 -33.93912 -31.69822 -31.51719 -29.83086 -28.70241 -27.55002 -27.36038 -24.69109 -24.62833 -23.61186 -22.28550 -21.55360 -20.86223 -20.43304 -19.80199 -18.16248 -18.07911 -17.15373 -16.60241 -16.39466 -16.12322 -15.56966 -15.06084 -14.85928 -14.56629 -14.48348 -13.84970 -13.70211 -13.60499 -13.47002 -13.32547 -13.09484 -12.97935 -12.53789 -12.42161 -12.30856 -12.10508 -11.99926 -11.69240 -11.57234 -11.53275 -11.41298 -11.15642 -11.09150 -11.00316 -10.86190 -10.60865 -10.46310 -10.36832 -10.31803 -10.10892 -10.07640 -9.80128 -9.29750 -8.96200 -7.01736 -5.85579 -3.14472 0.96775 1.54114 2.06701 2.09751 2.75968 3.36786 3.42826 3.44223 3.58143 3.81589 4.07836 4.13648 4.32407 4.44727 4.60140 4.61429 4.68364 4.71364 4.85585 4.88224 5.19555 5.29923 5.30066 5.38864 5.42442 5.45853 5.47735 5.50546 5.52496 5.55505 5.59684 5.68070 5.78080 5.81609 5.86241 5.94966 5.96469 5.98830 6.05581 6.16875 6.30542 6.42303 6.43994 6.61603 6.75371 7.08373 7.61492 7.73719 8.33295 8.43707 9.44879 10.01502 10.36182 11.37121 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011171 B = 0.002899 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.882888 B = 9656.731763 C =11620.900604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.012 4.012 3 C -0.144 4.144 4 C 0.206 3.794 5 N -0.301 5.301 6 N -0.074 5.074 7 N -0.087 5.087 8 N -0.294 5.294 9 C 0.090 3.910 10 C 0.501 3.499 11 O -0.520 6.520 12 N -0.707 5.707 13 C 0.148 3.852 14 H 0.096 0.904 15 C -0.132 4.132 16 C -0.123 4.123 17 C -0.111 4.111 18 C -0.101 4.101 19 H 0.083 0.917 20 C 0.162 3.838 21 N -0.730 5.730 22 C -0.241 4.241 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.933 5.933 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.406 0.594 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.020 0.980 47 H 0.017 0.983 48 H 0.384 0.616 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.494 6.771 15.351 17.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 C -0.202 4.202 4 C -0.073 4.073 5 N -0.149 5.149 6 N -0.068 5.068 7 N -0.073 5.073 8 N -0.095 5.095 9 C -0.036 4.036 10 C 0.283 3.717 11 O -0.395 6.395 12 N -0.358 5.358 13 C 0.043 3.957 14 H 0.114 0.886 15 C -0.171 4.171 16 C -0.161 4.161 17 C -0.149 4.149 18 C -0.121 4.121 19 H 0.101 0.899 20 C 0.034 3.966 21 N -0.375 5.375 22 C -0.372 4.372 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.581 5.581 26 Si 0.737 3.263 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.207 1.207 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.241 0.759 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.038 0.962 47 H 0.034 0.966 48 H 0.218 0.782 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.753 6.605 17.158 18.765 hybrid contribution 0.341 0.077 -2.161 2.190 sum 4.094 6.683 14.997 16.921 Atomic orbital electron populations 1.21833 0.91599 1.03345 1.03464 1.19829 0.98025 0.96075 0.89497 1.21854 1.01166 0.93378 1.03789 1.26123 0.94432 0.88688 0.98011 1.74952 1.19750 1.21866 0.98355 1.78596 1.06760 0.98997 1.22434 1.78874 1.20356 1.20833 0.87221 1.47842 1.34768 1.20074 1.06802 1.22028 0.99245 0.95833 0.86517 1.20240 0.87317 0.82708 0.81427 1.90823 1.26045 1.70474 1.52136 1.45939 1.24505 1.33968 1.31385 1.22016 0.93434 0.85965 0.94267 0.88561 1.22509 1.01843 0.94291 0.98470 1.22124 1.01374 0.97142 0.95481 1.22298 1.01314 0.94737 0.96559 1.22580 1.01152 0.96211 0.92128 0.89909 1.20637 0.96044 0.94710 0.85184 1.42319 1.55390 1.40598 0.99159 1.19209 1.21007 1.11229 0.85778 0.91268 1.24731 1.00040 0.98780 0.97289 1.69654 1.38516 1.30826 1.19144 0.86207 0.78757 0.78994 0.82329 1.21701 1.21734 1.20736 0.91119 0.90683 0.91851 0.88962 0.92398 0.90598 0.90979 0.83911 0.84107 0.75922 0.91616 0.91520 0.91789 0.91862 0.90596 0.91109 0.96192 0.96552 0.78245 0.93475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.18 37.16 0.34 -0.90 16 2 C -0.01 -0.10 3.26 -91.77 -0.30 -0.40 16 3 C -0.14 -0.92 9.18 37.16 0.34 -0.58 16 4 C 0.21 2.32 6.64 -155.43 -1.03 1.28 16 5 N -0.30 -4.22 12.36 32.70 0.40 -3.81 16 6 N -0.07 -1.14 13.43 60.35 0.81 -0.33 16 7 N -0.09 -1.21 13.29 60.35 0.80 -0.41 16 8 N -0.29 -3.24 2.83 -59.44 -0.17 -3.41 16 9 C 0.09 0.61 6.57 -5.19 -0.03 0.58 16 10 C 0.50 5.09 7.89 -10.99 -0.09 5.00 16 11 O -0.52 -7.76 16.14 5.56 0.09 -7.67 16 12 N -0.71 -6.38 5.11 -52.20 -0.27 -6.65 16 13 C 0.15 1.71 2.60 -66.27 -0.17 1.53 16 14 H 0.10 1.31 7.58 -51.93 -0.39 0.92 16 15 C -0.13 -1.43 6.53 -25.61 -0.17 -1.60 16 16 C -0.12 -1.34 6.80 -25.61 -0.17 -1.51 16 17 C -0.11 -1.48 6.20 -25.06 -0.16 -1.64 16 18 C -0.10 -1.36 2.50 -88.61 -0.22 -1.58 16 19 H 0.08 1.08 8.02 -51.93 -0.42 0.67 16 20 C 0.16 2.89 5.70 -4.04 -0.02 2.87 16 21 N -0.73 -16.97 5.52 -59.91 -0.33 -17.30 16 22 C -0.24 -6.39 9.99 -15.06 -0.15 -6.54 16 23 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 25 N -0.93 -26.95 13.06 55.49 0.72 -26.22 16 26 Si 0.91 21.53 29.55 -169.99 -5.02 16.50 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.58 6.84 -51.93 -0.36 0.22 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.14 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.14 0.44 7.12 -51.93 -0.37 0.07 16 39 H 0.41 2.58 8.53 -40.82 -0.35 2.23 16 40 H 0.07 0.65 8.04 -51.93 -0.42 0.24 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 45 H 0.07 1.01 7.94 -51.93 -0.41 0.60 16 46 H 0.02 0.38 7.99 -51.93 -0.41 -0.03 16 47 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.38 9.37 7.67 -40.82 -0.31 9.06 16 49 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 404.74 15.07 6.10 6.10 Total: -1.00 -35.23 404.74 -6.85 -42.08 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -8.06 Total: 5.05 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -1.93 Total: -3.93 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: 1.97 Total: -58.13 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: 0.09 Total: -7.67 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.23 -6.85 -42.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716070765.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.409 kcal (2) G-P(sol) polarization free energy of solvation -35.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds