Wall clock time and date at job start Tue Mar 31 2020 19:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46902 * 2 1 4 4 C 1.50695 * 109.47331 * 120.00109 * 2 1 3 5 5 N 1.31070 * 126.66298 * 300.17169 * 4 2 1 6 6 N 1.28840 * 107.99264 * 180.24351 * 5 4 2 7 7 N 1.28743 * 109.39605 * 359.75425 * 6 5 4 8 8 N 1.29022 * 108.80816 * 359.97438 * 7 6 5 9 9 C 1.46500 * 126.43603 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.47148 * 90.02400 * 9 8 7 11 11 O 1.21282 * 120.00090 * 359.97438 * 10 9 8 12 12 N 1.34771 * 119.99845 * 179.97438 * 10 9 8 13 13 C 1.46506 * 120.00040 * 179.97438 * 12 10 9 14 14 H 1.09001 * 110.53465 * 36.15895 * 13 12 10 15 15 C 1.54266 * 110.48818 * 273.54848 * 13 12 10 16 16 C 1.53872 * 106.59640 * 217.70889 * 15 13 12 17 17 C 1.54266 * 106.60044 * 359.97438 * 16 15 13 18 18 C 1.54887 * 110.48485 * 158.76961 * 13 12 10 19 19 H 1.09000 * 110.75698 * 38.31266 * 18 13 12 20 20 C 1.53001 * 110.75563 * 274.93505 * 18 13 12 21 21 N 1.46501 * 109.46614 * 175.00283 * 20 18 13 22 22 C 1.36942 * 119.99828 * 180.02562 * 21 20 18 23 23 H 1.08003 * 119.99818 * 359.97438 * 22 21 20 24 24 C 1.38814 * 120.00208 * 180.02562 * 22 21 20 25 25 N 1.31622 * 119.99673 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00149 * 179.97438 * 24 22 21 27 27 H 1.48510 * 109.46979 * 89.99764 * 26 24 22 28 28 H 1.48497 * 109.47278 * 209.99770 * 26 24 22 29 29 H 1.48501 * 109.47277 * 330.00090 * 26 24 22 30 30 H 1.09000 * 109.47154 * 299.99440 * 1 2 3 31 31 H 1.09002 * 109.46871 * 59.99930 * 1 2 3 32 32 H 1.09004 * 109.46665 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47154 * 240.00560 * 2 1 3 34 34 H 1.09003 * 109.46986 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47350 * 300.00520 * 3 2 1 36 36 H 1.09000 * 109.47160 * 59.99957 * 3 2 1 37 37 H 1.08998 * 109.46945 * 330.02569 * 9 8 7 38 38 H 1.08999 * 109.46954 * 210.02397 * 9 8 7 39 39 H 0.97005 * 120.00351 * 0.02562 * 12 10 9 40 40 H 1.09003 * 110.03179 * 336.99661 * 15 13 12 41 41 H 1.09005 * 110.03005 * 98.42401 * 15 13 12 42 42 H 1.09002 * 110.03208 * 119.28196 * 16 15 13 43 43 H 1.09000 * 110.03462 * 240.66592 * 16 15 13 44 44 H 1.09002 * 110.48438 * 142.28717 * 17 16 15 45 45 H 1.08998 * 110.48431 * 264.79545 * 17 16 15 46 46 H 1.09000 * 109.47234 * 295.00059 * 20 18 13 47 47 H 1.08996 * 109.46795 * 55.00568 * 20 18 13 48 48 H 0.96997 * 120.00825 * 0.02562 * 21 20 18 49 49 H 0.97002 * 119.99547 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7951 -0.3803 2.4764 6 7 2.4017 -1.2269 3.2349 7 7 3.0156 -2.0916 2.5049 8 7 2.8089 -1.8093 1.2631 9 6 3.3280 -2.5428 0.1060 10 6 2.3494 -3.6196 -0.2864 11 8 1.3201 -3.7609 0.3391 12 7 2.6183 -4.4257 -1.3325 13 6 1.6673 -5.4730 -1.7137 14 1 0.6428 -5.1307 -1.5675 15 6 1.9275 -6.7596 -0.9034 16 6 1.6902 -7.9389 -1.8629 17 6 1.2933 -7.3277 -3.2226 18 6 1.8916 -5.8992 -3.1858 19 1 2.9549 -5.9190 -3.4244 20 6 1.1372 -4.9710 -4.1399 21 7 1.4630 -5.3242 -5.5239 22 6 0.9023 -4.6248 -6.5591 23 1 0.2196 -3.8131 -6.3553 24 6 1.2105 -4.9597 -7.8705 25 7 2.0421 -5.9492 -8.1189 26 14 0.4451 -4.0061 -9.2826 27 1 1.3169 -2.8561 -9.6334 28 1 0.3027 -4.8972 -10.4620 29 1 -0.8928 -3.5068 -8.8751 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9564 0.8900 37 1 4.2846 -2.9974 0.3634 38 1 3.4653 -1.8550 -0.7284 39 1 3.4418 -4.3131 -1.8326 40 1 2.9562 -6.7724 -0.5432 41 1 1.2363 -6.8175 -0.0624 42 1 2.6037 -8.5240 -1.9685 43 1 0.8844 -8.5696 -1.4873 44 1 1.7284 -7.9020 -4.0405 45 1 0.2085 -7.2875 -3.3207 46 1 0.0645 -5.0796 -3.9801 47 1 1.4303 -3.9385 -3.9498 48 1 2.0758 -6.0534 -5.7071 49 1 2.2572 -6.1835 -9.0353 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716070765.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:20 Heat of formation + Delta-G solvation = 49.318463 kcal Electronic energy + Delta-G solvation = -29587.667226 eV Core-core repulsion = 25586.052036 eV Total energy + Delta-G solvation = -4001.615190 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -45.30345 -41.26928 -39.34273 -37.17495 -36.48175 -36.25663 -34.93748 -33.28742 -32.56499 -30.65683 -30.15543 -28.28965 -28.13485 -26.31249 -25.49703 -24.60839 -23.83595 -22.37389 -21.68453 -21.42154 -20.81551 -19.35815 -18.87570 -18.72636 -17.55140 -17.32787 -16.87226 -16.59695 -16.36317 -16.01825 -15.54699 -15.41248 -15.14640 -15.03520 -14.68574 -14.53492 -14.33947 -14.21870 -13.84688 -13.55008 -13.31174 -13.11482 -13.10139 -13.06337 -12.78775 -12.70521 -12.51579 -12.39235 -12.32116 -12.29627 -12.13490 -12.07290 -11.91172 -11.87292 -11.60750 -11.59887 -11.32617 -11.23899 -10.97324 -10.89370 -10.20070 -8.96163 -7.93166 -5.20721 0.08150 0.81970 1.12139 1.30604 1.49809 1.50826 1.58869 1.98739 2.57640 2.85979 3.13918 3.33661 3.41233 3.50255 3.58570 3.65789 3.88226 3.90308 3.99614 4.03865 4.17823 4.18629 4.36299 4.41237 4.46554 4.50517 4.55674 4.62961 4.67265 4.68758 4.75758 4.81180 4.88503 4.93099 4.96311 5.02903 5.09774 5.12520 5.18717 5.22881 5.25572 5.30216 5.33570 5.47055 5.51281 5.55293 6.29389 6.34195 7.00646 7.37080 7.47554 8.12884 8.36417 9.29966 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011171 B = 0.002899 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.882888 B = 9656.731763 C =11620.900604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.013 4.013 3 C -0.139 4.139 4 C 0.210 3.790 5 N -0.328 5.328 6 N -0.107 5.107 7 N -0.101 5.101 8 N -0.290 5.290 9 C 0.085 3.915 10 C 0.503 3.497 11 O -0.572 6.572 12 N -0.694 5.694 13 C 0.157 3.843 14 H 0.074 0.926 15 C -0.125 4.125 16 C -0.114 4.114 17 C -0.113 4.113 18 C -0.088 4.088 19 H 0.094 0.906 20 C 0.162 3.838 21 N -0.740 5.740 22 C -0.243 4.243 23 H 0.072 0.928 24 C -0.071 4.071 25 N -0.966 5.966 26 Si 0.967 3.033 27 H -0.285 1.285 28 H -0.298 1.298 29 H -0.273 1.273 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.038 0.962 33 H 0.118 0.882 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.057 0.943 37 H 0.179 0.821 38 H 0.187 0.813 39 H 0.423 0.577 40 H 0.081 0.919 41 H 0.057 0.943 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.008 0.992 47 H 0.026 0.974 48 H 0.376 0.624 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.779 7.725 14.754 17.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.034 4.034 3 C -0.197 4.197 4 C -0.069 4.069 5 N -0.177 5.177 6 N -0.101 5.101 7 N -0.087 5.087 8 N -0.091 5.091 9 C -0.039 4.039 10 C 0.287 3.713 11 O -0.451 6.451 12 N -0.346 5.346 13 C 0.052 3.948 14 H 0.092 0.908 15 C -0.164 4.164 16 C -0.152 4.152 17 C -0.151 4.151 18 C -0.107 4.107 19 H 0.112 0.888 20 C 0.036 3.964 21 N -0.382 5.382 22 C -0.375 4.375 23 H 0.090 0.910 24 C -0.263 4.263 25 N -0.617 5.617 26 Si 0.796 3.204 27 H -0.212 1.212 28 H -0.225 1.225 29 H -0.198 1.198 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.057 0.943 33 H 0.136 0.864 34 H 0.085 0.915 35 H 0.114 0.886 36 H 0.077 0.923 37 H 0.196 0.804 38 H 0.204 0.796 39 H 0.261 0.739 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.026 0.974 47 H 0.044 0.956 48 H 0.208 0.792 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.059 7.577 16.573 18.912 hybrid contribution -0.118 -0.237 -1.983 2.001 sum 4.941 7.340 14.590 17.063 Atomic orbital electron populations 1.21816 0.92310 1.01871 1.04062 1.20090 0.97363 0.97117 0.88859 1.21846 1.01705 0.92065 1.04119 1.26692 0.93474 0.88541 0.98149 1.74864 1.20583 1.22545 0.99719 1.78555 1.07982 0.99933 1.23604 1.78762 1.20627 1.20809 0.88498 1.48091 1.34261 1.19965 1.06822 1.22537 0.99007 0.95759 0.86568 1.20736 0.87009 0.82871 0.80656 1.90822 1.28480 1.71948 1.53843 1.45766 1.24549 1.33048 1.31258 1.21694 0.93070 0.87075 0.92976 0.90792 1.22443 1.02554 0.93527 0.97864 1.22061 1.02238 0.97223 0.93662 1.22260 1.00254 0.94890 0.97734 1.22396 1.00985 0.95205 0.92152 0.88758 1.20756 0.95898 0.96165 0.83589 1.42485 1.54971 1.40072 1.00715 1.19579 1.20219 1.10908 0.86779 0.90977 1.25464 1.01166 1.00074 0.99645 1.69792 1.40249 1.32553 1.19113 0.85238 0.78327 0.77634 0.79158 1.21152 1.22507 1.19799 0.92153 0.88499 0.94262 0.86420 0.91502 0.88573 0.92349 0.80406 0.79605 0.73904 0.89991 0.92409 0.90339 0.91296 0.92036 0.92657 0.97415 0.95626 0.79157 0.94048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.18 71.98 0.66 -1.65 16 2 C -0.01 -0.18 3.26 -11.54 -0.04 -0.21 16 3 C -0.14 -1.44 9.18 71.98 0.66 -0.78 16 4 C 0.21 4.47 6.64 138.13 0.92 5.39 16 5 N -0.33 -9.26 12.36 -50.46 -0.62 -9.88 16 6 N -0.11 -3.33 13.43 37.01 0.50 -2.83 16 7 N -0.10 -2.74 13.29 37.02 0.49 -2.25 16 8 N -0.29 -5.87 2.83 -341.98 -0.97 -6.84 16 9 C 0.09 0.86 6.57 85.63 0.56 1.42 16 10 C 0.50 9.02 7.89 87.66 0.69 9.72 16 11 O -0.57 -16.68 16.14 -3.03 -0.05 -16.73 16 12 N -0.69 -10.58 5.11 -437.44 -2.24 -12.82 16 13 C 0.16 3.39 2.60 46.06 0.12 3.51 16 14 H 0.07 1.99 7.58 -2.39 -0.02 1.97 16 15 C -0.13 -2.47 6.53 31.32 0.20 -2.26 16 16 C -0.11 -2.28 6.80 31.32 0.21 -2.06 16 17 C -0.11 -2.96 6.20 31.68 0.20 -2.76 16 18 C -0.09 -2.24 2.50 -9.49 -0.02 -2.26 16 19 H 0.09 2.23 8.02 -2.39 -0.02 2.21 16 20 C 0.16 5.65 5.70 86.38 0.49 6.14 16 21 N -0.74 -34.03 5.52 -343.44 -1.90 -35.93 16 22 C -0.24 -12.73 9.99 84.03 0.84 -11.89 16 23 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 24 C -0.07 -3.86 5.50 84.86 0.47 -3.40 16 25 N -0.97 -56.04 13.06 21.65 0.28 -55.75 16 26 Si 0.97 43.91 29.55 68.60 2.03 45.94 16 27 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 28 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 29 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.10 1.12 8.14 -2.39 -0.02 1.11 16 32 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.12 1.02 6.84 -2.39 -0.02 1.00 16 34 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.18 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.19 0.18 7.12 -2.39 -0.02 0.17 16 39 H 0.42 3.70 8.53 -92.70 -0.79 2.91 16 40 H 0.08 1.37 8.04 -2.39 -0.02 1.36 16 41 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.05 1.60 7.94 -2.39 -0.02 1.58 16 46 H 0.01 0.30 7.99 -2.39 -0.02 0.28 16 47 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.38 18.34 7.67 -92.71 -0.71 17.63 16 49 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -79.08 404.74 2.95 -76.13 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -0.54 Total: 22.07 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 5.96 Total: -1.10 kcal Atomic # 7 Polarization: -121.85 SS G_CDS: -4.45 Total: -126.30 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.05 Total: -16.73 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -79.08 2.95 -76.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716070765.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.445 kcal (2) G-P(sol) polarization free energy of solvation -79.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds