Wall clock time and date at job start Tue Mar 31 2020 19:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46541 * 2 1 4 4 C 1.50696 * 109.47084 * 119.99686 * 2 1 3 5 5 N 1.31070 * 126.66247 * 300.17632 * 4 2 1 6 6 N 1.28840 * 107.99127 * 180.24395 * 5 4 2 7 7 N 1.28745 * 109.39581 * 359.74957 * 6 5 4 8 8 N 1.29012 * 108.80742 * 0.02562 * 7 6 5 9 9 C 1.46509 * 126.43748 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.46835 * 90.02264 * 9 8 7 11 11 O 1.21280 * 120.00248 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99584 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99802 * 180.02562 * 12 10 9 14 14 H 1.09001 * 110.01863 * 326.39350 * 13 12 10 15 15 C 1.54463 * 110.12163 * 87.67539 * 13 12 10 16 16 C 1.54890 * 104.10368 * 142.72720 * 15 13 12 17 17 C 1.54887 * 102.91108 * 322.30112 * 16 15 13 18 18 C 1.53877 * 110.03146 * 204.99958 * 13 12 10 19 19 H 1.08995 * 110.02951 * 121.43420 * 18 13 12 20 20 C 1.52998 * 110.03089 * 0.02562 * 18 13 12 21 21 N 1.46503 * 109.46978 * 176.38178 * 20 18 13 22 22 C 1.36932 * 120.00503 * 180.02562 * 21 20 18 23 23 H 1.08006 * 119.99402 * 359.97438 * 22 21 20 24 24 C 1.38808 * 120.00512 * 179.97438 * 22 21 20 25 25 N 1.31616 * 119.99819 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00041 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47306 * 0.02562 * 26 24 22 28 28 H 1.48495 * 109.47159 * 120.00080 * 26 24 22 29 29 H 1.48503 * 109.47286 * 239.99887 * 26 24 22 30 30 H 1.08994 * 109.47060 * 299.99712 * 1 2 3 31 31 H 1.08995 * 109.47222 * 60.00572 * 1 2 3 32 32 H 1.09007 * 109.46874 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47060 * 240.00288 * 2 1 3 34 34 H 1.09013 * 109.46589 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47336 * 299.99325 * 3 2 1 36 36 H 1.08994 * 109.47208 * 60.00379 * 3 2 1 37 37 H 1.08999 * 109.46906 * 330.02806 * 9 8 7 38 38 H 1.08995 * 109.46916 * 210.02218 * 9 8 7 39 39 H 0.96998 * 120.00309 * 359.97438 * 12 10 9 40 40 H 1.09003 * 110.40626 * 24.13745 * 15 13 12 41 41 H 1.09003 * 110.65885 * 261.43970 * 15 13 12 42 42 H 1.09002 * 110.75897 * 203.89231 * 16 15 13 43 43 H 1.09006 * 110.75292 * 80.70460 * 16 15 13 44 44 H 1.09004 * 110.48468 * 156.53190 * 17 16 15 45 45 H 1.09006 * 110.48476 * 279.16949 * 17 16 15 46 46 H 1.09003 * 109.47068 * 296.37646 * 20 18 13 47 47 H 1.08993 * 109.47243 * 56.38220 * 20 18 13 48 48 H 0.97005 * 119.99590 * 359.97438 * 21 20 18 49 49 H 0.97004 * 119.99742 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7949 -0.3801 2.4765 6 7 2.4015 -1.2267 3.2350 7 7 3.0154 -2.0915 2.5051 8 7 2.8097 -1.8087 1.2633 9 6 3.3291 -2.5420 0.1062 10 6 2.3502 -3.6182 -0.2871 11 8 1.3204 -3.7591 0.3378 12 7 2.6197 -4.4247 -1.3327 13 6 1.6678 -5.4706 -1.7155 14 1 1.1687 -5.8632 -0.8296 15 6 0.6218 -4.9026 -2.6999 16 6 0.3696 -6.0635 -3.6938 17 6 1.7777 -6.6858 -3.8636 18 6 2.3998 -6.6046 -2.4543 19 1 2.2551 -7.5478 -1.9275 20 6 3.8925 -6.2852 -2.5573 21 7 4.5904 -7.4101 -3.1850 22 6 5.9441 -7.3516 -3.3829 23 1 6.4972 -6.4759 -3.0767 24 6 6.6054 -8.4176 -3.9771 25 7 5.9314 -9.4848 -4.3498 26 14 8.4520 -8.3373 -4.2477 27 1 8.9702 -7.0401 -3.7440 28 1 9.1084 -9.4500 -3.5154 29 1 8.7454 -8.4585 -5.6984 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 4.2853 -2.9972 0.3640 38 1 3.4672 -1.8540 -0.7278 39 1 3.4435 -4.3123 -1.8323 40 1 1.0234 -4.0340 -3.2218 41 1 -0.2979 -4.6424 -2.1759 42 1 -0.0022 -5.6835 -4.6454 43 1 -0.3253 -6.7895 -3.2715 44 1 1.6995 -7.7239 -4.1870 45 1 2.3673 -6.1072 -4.5748 46 1 4.0314 -5.3887 -3.1616 47 1 4.2978 -6.1173 -1.5596 48 1 4.0936 -8.1967 -3.4596 49 1 6.3936 -10.2296 -4.7654 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716070766.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:25 Heat of formation + Delta-G solvation = 83.242465 kcal Electronic energy + Delta-G solvation = -29752.274094 eV Core-core repulsion = 25752.129958 eV Total energy + Delta-G solvation = -4000.144135 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.36492 -40.45637 -38.37639 -36.50174 -35.56223 -34.51214 -33.96149 -31.69228 -31.54623 -29.80051 -28.69766 -27.62746 -27.30269 -24.72990 -24.65277 -23.61739 -22.65357 -21.55648 -20.80173 -20.60665 -19.28893 -18.33596 -17.97228 -17.19832 -16.63117 -16.21852 -15.78925 -15.65176 -15.27997 -14.94162 -14.68790 -14.49262 -13.99156 -13.79636 -13.66715 -13.54663 -13.15164 -13.13327 -12.99788 -12.61608 -12.39007 -12.33232 -12.04523 -11.82752 -11.76084 -11.58192 -11.52828 -11.48037 -11.16264 -10.98832 -10.97678 -10.95836 -10.64410 -10.54345 -10.41867 -10.28974 -10.08831 -10.04989 -9.81789 -9.28025 -8.99785 -7.06560 -5.88719 -3.18506 0.99973 1.57424 2.10523 2.12652 2.82946 3.34761 3.39914 3.42875 3.56161 3.84103 4.09437 4.15894 4.41161 4.45238 4.54009 4.59767 4.64486 4.66610 4.82593 4.93741 5.19130 5.21318 5.29351 5.33451 5.40441 5.41104 5.44522 5.46003 5.50703 5.53383 5.57826 5.70430 5.75830 5.76646 5.84028 5.88485 5.90030 5.95109 6.07008 6.12595 6.28933 6.34937 6.44530 6.53285 6.64872 7.14653 7.56329 7.78927 8.29380 8.46464 9.41275 9.97357 10.31533 11.33857 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013004 B = 0.002731 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.709253 B =10248.823701 C =11418.985828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.011 4.011 3 C -0.144 4.144 4 C 0.201 3.799 5 N -0.301 5.301 6 N -0.075 5.075 7 N -0.083 5.083 8 N -0.292 5.292 9 C 0.089 3.911 10 C 0.500 3.500 11 O -0.524 6.524 12 N -0.708 5.708 13 C 0.150 3.850 14 H 0.091 0.909 15 C -0.131 4.131 16 C -0.125 4.125 17 C -0.111 4.111 18 C -0.108 4.108 19 H 0.084 0.916 20 C 0.157 3.843 21 N -0.728 5.728 22 C -0.245 4.245 23 H 0.070 0.930 24 C -0.011 4.011 25 N -0.930 5.930 26 Si 0.907 3.093 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.146 0.854 38 H 0.140 0.860 39 H 0.411 0.589 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.017 0.983 47 H 0.020 0.980 48 H 0.385 0.615 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.733 18.614 2.241 21.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.033 4.033 3 C -0.202 4.202 4 C -0.077 4.077 5 N -0.150 5.150 6 N -0.068 5.068 7 N -0.068 5.068 8 N -0.093 5.093 9 C -0.038 4.038 10 C 0.283 3.717 11 O -0.400 6.400 12 N -0.363 5.363 13 C 0.045 3.955 14 H 0.109 0.891 15 C -0.169 4.169 16 C -0.163 4.163 17 C -0.149 4.149 18 C -0.127 4.127 19 H 0.102 0.898 20 C 0.029 3.971 21 N -0.372 5.372 22 C -0.376 4.376 23 H 0.088 0.912 24 C -0.207 4.207 25 N -0.578 5.578 26 Si 0.738 3.262 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.218 1.218 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.164 0.836 38 H 0.157 0.843 39 H 0.250 0.750 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.034 0.966 47 H 0.038 0.962 48 H 0.219 0.781 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.161 18.386 4.141 21.903 hybrid contribution 1.451 -0.527 -1.472 2.133 sum -9.710 17.858 2.669 20.502 Atomic orbital electron populations 1.21825 0.91743 1.03243 1.03366 1.19790 0.97870 0.96028 0.89562 1.21856 1.01286 0.93388 1.03698 1.26066 0.94756 0.88913 0.97980 1.74934 1.19796 1.21917 0.98334 1.78610 1.06822 0.98998 1.22404 1.78922 1.20082 1.20632 0.87197 1.47854 1.34571 1.19999 1.06863 1.22050 0.99588 0.95743 0.86374 1.20250 0.87215 0.83005 0.81280 1.90804 1.26245 1.70336 1.52608 1.46283 1.24851 1.33650 1.31488 1.21790 0.89012 0.86701 0.98017 0.89106 1.22786 0.98585 0.98628 0.96927 1.22491 0.97833 0.97186 0.98771 1.22358 0.94590 1.01762 0.96188 1.22232 0.96382 0.97686 0.96429 0.89784 1.20673 0.88829 0.91998 0.95572 1.42315 1.05516 1.17018 1.72371 1.19220 0.83974 1.01116 1.33295 0.91171 1.24750 0.98052 0.96493 1.01424 1.69663 1.34699 1.06764 1.46679 0.86133 0.85310 0.77282 0.77501 1.20549 1.21794 1.21797 0.91066 0.90906 0.91887 0.89126 0.92324 0.90745 0.90939 0.83619 0.84252 0.75003 0.91243 0.91432 0.91490 0.91508 0.91039 0.90863 0.96557 0.96223 0.78078 0.93428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.18 37.16 0.34 -0.70 16 2 C -0.01 -0.08 3.26 -91.77 -0.30 -0.38 16 3 C -0.14 -0.80 9.17 37.16 0.34 -0.46 16 4 C 0.20 2.24 6.64 -155.43 -1.03 1.20 16 5 N -0.30 -4.23 12.36 32.70 0.40 -3.83 16 6 N -0.07 -1.18 13.43 60.35 0.81 -0.37 16 7 N -0.08 -1.22 13.29 60.35 0.80 -0.42 16 8 N -0.29 -3.37 2.83 -59.44 -0.17 -3.54 16 9 C 0.09 0.69 6.57 -5.19 -0.03 0.65 16 10 C 0.50 5.43 7.90 -10.98 -0.09 5.34 16 11 O -0.52 -7.93 16.08 5.56 0.09 -7.84 16 12 N -0.71 -7.22 4.41 -52.62 -0.23 -7.45 16 13 C 0.15 1.76 3.22 -66.71 -0.22 1.54 16 14 H 0.09 1.21 7.56 -51.93 -0.39 0.82 16 15 C -0.13 -1.34 6.56 -24.97 -0.16 -1.51 16 16 C -0.12 -1.30 6.90 -24.74 -0.17 -1.48 16 17 C -0.11 -1.46 6.02 -25.07 -0.15 -1.61 16 18 C -0.11 -1.49 2.98 -89.50 -0.27 -1.76 16 19 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 20 C 0.16 2.64 4.18 -4.04 -0.02 2.62 16 21 N -0.73 -16.67 5.43 -59.91 -0.33 -17.00 16 22 C -0.25 -6.35 9.99 -15.06 -0.15 -6.50 16 23 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 24 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 25 N -0.93 -26.89 13.06 55.49 0.72 -26.16 16 26 Si 0.91 21.33 29.55 -169.99 -5.02 16.30 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 33 H 0.09 0.45 6.84 -51.93 -0.36 0.10 16 34 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 35 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.15 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.14 0.47 7.12 -51.93 -0.37 0.10 16 39 H 0.41 3.67 5.88 -40.82 -0.24 3.43 16 40 H 0.07 0.66 8.05 -51.93 -0.42 0.24 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.07 1.04 7.78 -51.93 -0.40 0.63 16 46 H 0.02 0.26 7.06 -51.93 -0.37 -0.10 16 47 H 0.02 0.34 7.51 -51.93 -0.39 -0.05 16 48 H 0.39 9.46 7.51 -40.82 -0.31 9.15 16 49 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 398.99 15.07 6.01 6.01 Total: -1.00 -34.75 398.99 -6.77 -41.52 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -7.86 Total: 6.18 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -2.00 Total: -3.42 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: 2.02 Total: -58.77 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.09 Total: -7.84 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.75 -6.77 -41.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716070766.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.766 kcal (2) G-P(sol) polarization free energy of solvation -34.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds