Wall clock time and date at job start Tue Mar 31 2020 19:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46541 * 2 1 4 4 C 1.50696 * 109.47084 * 119.99686 * 2 1 3 5 5 N 1.31070 * 126.66247 * 300.17632 * 4 2 1 6 6 N 1.28840 * 107.99127 * 180.24395 * 5 4 2 7 7 N 1.28745 * 109.39581 * 359.74957 * 6 5 4 8 8 N 1.29012 * 108.80742 * 0.02562 * 7 6 5 9 9 C 1.46509 * 126.43748 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.46835 * 90.02264 * 9 8 7 11 11 O 1.21280 * 120.00248 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99584 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99802 * 180.02562 * 12 10 9 14 14 H 1.09001 * 110.01863 * 326.39350 * 13 12 10 15 15 C 1.54463 * 110.12163 * 87.67539 * 13 12 10 16 16 C 1.54890 * 104.10368 * 142.72720 * 15 13 12 17 17 C 1.54887 * 102.91108 * 322.30112 * 16 15 13 18 18 C 1.53877 * 110.03146 * 204.99958 * 13 12 10 19 19 H 1.08995 * 110.02951 * 121.43420 * 18 13 12 20 20 C 1.52998 * 110.03089 * 0.02562 * 18 13 12 21 21 N 1.46503 * 109.46978 * 176.38178 * 20 18 13 22 22 C 1.36932 * 120.00503 * 180.02562 * 21 20 18 23 23 H 1.08006 * 119.99402 * 359.97438 * 22 21 20 24 24 C 1.38808 * 120.00512 * 179.97438 * 22 21 20 25 25 N 1.31616 * 119.99819 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00041 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47306 * 0.02562 * 26 24 22 28 28 H 1.48495 * 109.47159 * 120.00080 * 26 24 22 29 29 H 1.48503 * 109.47286 * 239.99887 * 26 24 22 30 30 H 1.08994 * 109.47060 * 299.99712 * 1 2 3 31 31 H 1.08995 * 109.47222 * 60.00572 * 1 2 3 32 32 H 1.09007 * 109.46874 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47060 * 240.00288 * 2 1 3 34 34 H 1.09013 * 109.46589 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47336 * 299.99325 * 3 2 1 36 36 H 1.08994 * 109.47208 * 60.00379 * 3 2 1 37 37 H 1.08999 * 109.46906 * 330.02806 * 9 8 7 38 38 H 1.08995 * 109.46916 * 210.02218 * 9 8 7 39 39 H 0.96998 * 120.00309 * 359.97438 * 12 10 9 40 40 H 1.09003 * 110.40626 * 24.13745 * 15 13 12 41 41 H 1.09003 * 110.65885 * 261.43970 * 15 13 12 42 42 H 1.09002 * 110.75897 * 203.89231 * 16 15 13 43 43 H 1.09006 * 110.75292 * 80.70460 * 16 15 13 44 44 H 1.09004 * 110.48468 * 156.53190 * 17 16 15 45 45 H 1.09006 * 110.48476 * 279.16949 * 17 16 15 46 46 H 1.09003 * 109.47068 * 296.37646 * 20 18 13 47 47 H 1.08993 * 109.47243 * 56.38220 * 20 18 13 48 48 H 0.97005 * 119.99590 * 359.97438 * 21 20 18 49 49 H 0.97004 * 119.99742 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7949 -0.3801 2.4765 6 7 2.4015 -1.2267 3.2350 7 7 3.0154 -2.0915 2.5051 8 7 2.8097 -1.8087 1.2633 9 6 3.3291 -2.5420 0.1062 10 6 2.3502 -3.6182 -0.2871 11 8 1.3204 -3.7591 0.3378 12 7 2.6197 -4.4247 -1.3327 13 6 1.6678 -5.4706 -1.7155 14 1 1.1687 -5.8632 -0.8296 15 6 0.6218 -4.9026 -2.6999 16 6 0.3696 -6.0635 -3.6938 17 6 1.7777 -6.6858 -3.8636 18 6 2.3998 -6.6046 -2.4543 19 1 2.2551 -7.5478 -1.9275 20 6 3.8925 -6.2852 -2.5573 21 7 4.5904 -7.4101 -3.1850 22 6 5.9441 -7.3516 -3.3829 23 1 6.4972 -6.4759 -3.0767 24 6 6.6054 -8.4176 -3.9771 25 7 5.9314 -9.4848 -4.3498 26 14 8.4520 -8.3373 -4.2477 27 1 8.9702 -7.0401 -3.7440 28 1 9.1084 -9.4500 -3.5154 29 1 8.7454 -8.4585 -5.6984 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 4.2853 -2.9972 0.3640 38 1 3.4672 -1.8540 -0.7278 39 1 3.4435 -4.3123 -1.8323 40 1 1.0234 -4.0340 -3.2218 41 1 -0.2979 -4.6424 -2.1759 42 1 -0.0022 -5.6835 -4.6454 43 1 -0.3253 -6.7895 -3.2715 44 1 1.6995 -7.7239 -4.1870 45 1 2.3673 -6.1072 -4.5748 46 1 4.0314 -5.3887 -3.1616 47 1 4.2978 -6.1173 -1.5596 48 1 4.0936 -8.1967 -3.4596 49 1 6.3936 -10.2296 -4.7654 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716070766.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:24 Heat of formation + Delta-G solvation = 58.955392 kcal Electronic energy + Delta-G solvation = -29753.327260 eV Core-core repulsion = 25752.129958 eV Total energy + Delta-G solvation = -4001.197302 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.30253 -41.40625 -39.41805 -37.15719 -36.46035 -36.17541 -34.90866 -33.27819 -32.56156 -30.66395 -30.11536 -28.22707 -28.10214 -26.32727 -25.48098 -24.55743 -24.21369 -22.40178 -21.60959 -21.48381 -20.42366 -19.43525 -18.97654 -18.64708 -17.61926 -17.04908 -16.76793 -16.52100 -16.44321 -16.24247 -15.55182 -15.42090 -15.23465 -15.13092 -14.73004 -14.51668 -14.36534 -14.18889 -13.82304 -13.45411 -13.24130 -13.10944 -13.08433 -12.89273 -12.79511 -12.68008 -12.49516 -12.37652 -12.29174 -12.27752 -12.10490 -11.93267 -11.88950 -11.76510 -11.71294 -11.53868 -11.43710 -11.23158 -10.97025 -10.91751 -10.18985 -8.96673 -7.92777 -5.20767 0.09530 0.81834 1.12772 1.29476 1.49777 1.50903 1.59795 2.00062 2.57721 2.87920 3.14810 3.31763 3.42477 3.54056 3.59516 3.67698 3.86687 3.89733 4.02637 4.06229 4.18946 4.19992 4.37744 4.39551 4.47747 4.50711 4.54938 4.63866 4.69487 4.76145 4.78908 4.84871 4.90965 4.91213 4.94670 5.00755 5.07102 5.14160 5.23685 5.26993 5.29846 5.36316 5.36936 5.46058 5.50214 5.54692 6.28321 6.31651 6.96530 7.36531 7.48047 8.13166 8.33828 9.31164 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013004 B = 0.002731 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.709253 B =10248.823701 C =11418.985828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.012 4.012 3 C -0.140 4.140 4 C 0.210 3.790 5 N -0.329 5.329 6 N -0.107 5.107 7 N -0.107 5.107 8 N -0.291 5.291 9 C 0.083 3.917 10 C 0.504 3.496 11 O -0.570 6.570 12 N -0.699 5.699 13 C 0.156 3.844 14 H 0.073 0.927 15 C -0.121 4.121 16 C -0.116 4.116 17 C -0.109 4.109 18 C -0.101 4.101 19 H 0.065 0.935 20 C 0.157 3.843 21 N -0.743 5.743 22 C -0.237 4.237 23 H 0.084 0.916 24 C -0.077 4.077 25 N -0.971 5.971 26 Si 0.968 3.032 27 H -0.261 1.261 28 H -0.301 1.301 29 H -0.296 1.296 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.040 0.960 33 H 0.123 0.877 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.055 0.945 37 H 0.167 0.833 38 H 0.193 0.807 39 H 0.420 0.580 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.068 0.932 44 H 0.053 0.947 45 H 0.066 0.934 46 H 0.041 0.959 47 H 0.024 0.976 48 H 0.373 0.627 49 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.314 21.204 0.608 23.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.033 4.033 3 C -0.198 4.198 4 C -0.068 4.068 5 N -0.178 5.178 6 N -0.101 5.101 7 N -0.093 5.093 8 N -0.091 5.091 9 C -0.041 4.041 10 C 0.288 3.712 11 O -0.449 6.449 12 N -0.354 5.354 13 C 0.051 3.949 14 H 0.091 0.909 15 C -0.159 4.159 16 C -0.154 4.154 17 C -0.147 4.147 18 C -0.120 4.120 19 H 0.083 0.917 20 C 0.030 3.970 21 N -0.385 5.385 22 C -0.369 4.369 23 H 0.102 0.898 24 C -0.269 4.269 25 N -0.622 5.622 26 Si 0.798 3.202 27 H -0.185 1.185 28 H -0.229 1.229 29 H -0.224 1.224 30 H 0.075 0.925 31 H 0.121 0.879 32 H 0.060 0.940 33 H 0.140 0.860 34 H 0.082 0.918 35 H 0.119 0.881 36 H 0.074 0.926 37 H 0.184 0.816 38 H 0.210 0.790 39 H 0.260 0.740 40 H 0.104 0.896 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.087 0.913 44 H 0.072 0.928 45 H 0.085 0.915 46 H 0.059 0.941 47 H 0.042 0.958 48 H 0.205 0.795 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -10.727 21.027 2.513 23.739 hybrid contribution 1.251 -1.311 -0.966 2.054 sum -9.477 19.716 1.547 21.930 Atomic orbital electron populations 1.21815 0.91962 1.01998 1.04139 1.20143 0.97586 0.96923 0.88671 1.21857 1.01583 0.92173 1.04206 1.26833 0.93287 0.88374 0.98343 1.74848 1.20652 1.22487 0.99791 1.78565 1.07973 0.99923 1.23651 1.78817 1.20769 1.20977 0.88721 1.48084 1.34283 1.20095 1.06673 1.22526 0.98828 0.95982 0.86745 1.20684 0.86966 0.83145 0.80403 1.90803 1.28468 1.71673 1.53971 1.46147 1.24794 1.32966 1.31469 1.21586 0.89340 0.86533 0.97431 0.90891 1.22721 0.98051 0.98866 0.96284 1.22447 0.96007 0.97153 0.99767 1.22286 0.96304 1.00859 0.95247 1.22104 0.94921 0.97832 0.97171 0.91657 1.20883 0.89975 0.90805 0.95324 1.42562 1.04996 1.18287 1.72698 1.19699 0.85411 1.00855 1.30964 0.89828 1.25525 1.02016 0.96699 1.02700 1.69818 1.36078 1.07569 1.48727 0.85145 0.80740 0.77579 0.76734 1.18455 1.22864 1.22364 0.92534 0.87947 0.94046 0.85950 0.91825 0.88083 0.92605 0.81555 0.78957 0.73956 0.89587 0.91273 0.89780 0.91296 0.92845 0.91512 0.94141 0.95806 0.79547 0.94226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.18 71.98 0.66 -1.09 16 2 C -0.01 -0.13 3.26 -11.54 -0.04 -0.17 16 3 C -0.14 -1.11 9.17 71.98 0.66 -0.45 16 4 C 0.21 4.35 6.64 138.13 0.92 5.26 16 5 N -0.33 -9.27 12.36 -50.46 -0.62 -9.89 16 6 N -0.11 -3.47 13.43 37.01 0.50 -2.97 16 7 N -0.11 -3.13 13.29 37.02 0.49 -2.63 16 8 N -0.29 -6.18 2.83 -341.96 -0.97 -7.15 16 9 C 0.08 1.00 6.57 85.63 0.56 1.56 16 10 C 0.50 9.68 7.90 87.66 0.69 10.38 16 11 O -0.57 -16.66 16.08 -3.03 -0.05 -16.71 16 12 N -0.70 -12.26 4.41 -438.77 -1.94 -14.20 16 13 C 0.16 3.42 3.22 45.78 0.15 3.56 16 14 H 0.07 1.91 7.56 -2.39 -0.02 1.89 16 15 C -0.12 -2.15 6.56 31.74 0.21 -1.94 16 16 C -0.12 -2.17 6.90 31.88 0.22 -1.95 16 17 C -0.11 -2.75 6.02 31.67 0.19 -2.56 16 18 C -0.10 -2.70 2.98 -10.07 -0.03 -2.73 16 19 H 0.06 1.99 8.14 -2.39 -0.02 1.98 16 20 C 0.16 4.96 4.18 86.38 0.36 5.32 16 21 N -0.74 -33.59 5.43 -343.46 -1.87 -35.46 16 22 C -0.24 -12.03 9.99 84.03 0.84 -11.19 16 23 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 24 C -0.08 -4.19 5.50 84.86 0.47 -3.72 16 25 N -0.97 -57.09 13.06 21.65 0.28 -56.80 16 26 Si 0.97 43.60 29.55 68.60 2.03 45.62 16 27 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 28 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 29 H -0.30 -13.45 7.11 99.48 0.71 -12.75 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.12 0.59 6.84 -2.39 -0.02 0.57 16 34 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 35 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.17 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.19 0.20 7.12 -2.39 -0.02 0.18 16 39 H 0.42 5.88 5.88 -92.71 -0.55 5.34 16 40 H 0.09 1.28 8.05 -2.39 -0.02 1.26 16 41 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 44 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 45 H 0.07 1.77 7.78 -2.38 -0.02 1.76 16 46 H 0.04 1.13 7.06 -2.39 -0.02 1.12 16 47 H 0.02 0.76 7.51 -2.39 -0.02 0.74 16 48 H 0.37 18.57 7.51 -92.70 -0.70 17.87 16 49 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -78.95 398.99 3.44 -75.50 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: -0.27 Total: 24.39 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: 5.86 Total: 0.29 kcal Atomic # 7 Polarization: -124.98 SS G_CDS: -4.12 Total: -129.10 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.05 Total: -16.71 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -78.95 3.44 -75.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716070766.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.459 kcal (2) G-P(sol) polarization free energy of solvation -78.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds