Wall clock time and date at job start Tue Mar 31 2020 19:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47449 * 2 1 4 4 C 1.50697 * 109.47114 * 120.00011 * 2 1 3 5 5 N 1.31073 * 126.65998 * 300.17243 * 4 2 1 6 6 N 1.28846 * 107.99066 * 180.24256 * 5 4 2 7 7 N 1.28737 * 109.39633 * 359.75161 * 6 5 4 8 8 N 1.29018 * 108.80714 * 0.02562 * 7 6 5 9 9 C 1.46509 * 126.43694 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47002 * 90.01922 * 9 8 7 11 11 O 1.21283 * 120.00472 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99538 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 9 14 14 H 1.09000 * 110.02007 * 35.21543 * 13 12 10 15 15 C 1.53884 * 110.03428 * 273.82208 * 13 12 10 16 16 C 1.54259 * 106.60140 * 240.71862 * 15 13 12 17 17 C 1.54894 * 104.19724 * 23.60476 * 16 15 13 18 18 C 1.54262 * 110.03309 * 156.66022 * 13 12 10 19 19 H 1.09005 * 110.48630 * 214.35636 * 18 13 12 20 20 C 1.53000 * 110.48483 * 336.99216 * 18 13 12 21 21 N 1.46499 * 109.47351 * 184.99802 * 20 18 13 22 22 C 1.36939 * 120.00237 * 179.97438 * 21 20 18 23 23 H 1.08000 * 119.99739 * 0.02562 * 22 21 20 24 24 C 1.38815 * 120.00047 * 180.02562 * 22 21 20 25 25 N 1.31615 * 119.99968 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99827 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47306 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47193 * 120.00092 * 26 24 22 29 29 H 1.48500 * 109.46755 * 239.99819 * 26 24 22 30 30 H 1.08997 * 109.47524 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46994 * 300.00289 * 1 2 3 32 32 H 1.08998 * 109.46944 * 59.99944 * 1 2 3 33 33 H 1.08997 * 109.47276 * 239.99905 * 2 1 3 34 34 H 1.08999 * 109.47473 * 180.02562 * 3 2 1 35 35 H 1.09007 * 109.47168 * 300.00110 * 3 2 1 36 36 H 1.08997 * 109.46959 * 59.99711 * 3 2 1 37 37 H 1.09003 * 109.46564 * 330.02349 * 9 8 7 38 38 H 1.08993 * 109.46901 * 210.02685 * 9 8 7 39 39 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 40 40 H 1.08998 * 110.02954 * 0.02562 * 15 13 12 41 41 H 1.09001 * 110.02844 * 121.42802 * 15 13 12 42 42 H 1.08990 * 110.49077 * 142.28926 * 16 15 13 43 43 H 1.09001 * 110.48321 * 264.79865 * 16 15 13 44 44 H 1.09002 * 110.74601 * 80.37330 * 17 16 15 45 45 H 1.08993 * 110.75742 * 203.55887 * 17 16 15 46 46 H 1.08994 * 109.47205 * 305.00501 * 20 18 13 47 47 H 1.09006 * 109.46795 * 65.00337 * 20 18 13 48 48 H 0.97001 * 120.00057 * 0.02562 * 21 20 18 49 49 H 0.97002 * 120.00067 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7949 -0.3802 2.4765 6 7 2.4015 -1.2268 3.2350 7 7 3.0153 -2.0916 2.5052 8 7 2.8096 -1.8087 1.2633 9 6 3.3290 -2.5421 0.1062 10 6 2.3501 -3.6182 -0.2871 11 8 1.3199 -3.7586 0.3372 12 7 2.6192 -4.4241 -1.3334 13 6 1.6704 -5.4741 -1.7121 14 1 0.6491 -5.1322 -1.5450 15 6 1.9402 -6.7487 -0.8931 16 6 2.2902 -7.8579 -1.9064 17 6 2.7993 -7.0887 -3.1508 18 6 1.8660 -5.8535 -3.1945 19 1 0.9108 -6.1130 -3.6511 20 6 2.5314 -4.7063 -3.9575 21 7 2.5981 -5.0411 -5.3821 22 6 3.1568 -4.1584 -6.2676 23 1 3.5486 -3.2156 -5.9155 24 6 3.2195 -4.4755 -7.6175 25 7 2.7416 -5.6243 -8.0466 26 14 3.9822 -3.2717 -8.8252 27 1 4.4408 -2.0622 -8.0957 28 1 5.1400 -3.9128 -9.4987 29 1 2.9716 -2.8828 -9.8414 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 4.2853 -2.9973 0.3640 38 1 3.4672 -1.8540 -0.7278 39 1 3.4430 -4.3116 -1.8330 40 1 2.7767 -6.5857 -0.2136 41 1 1.0494 -7.0256 -0.3292 42 1 3.0738 -8.5034 -1.5099 43 1 1.4040 -8.4426 -2.1531 44 1 3.8375 -6.7840 -3.0183 45 1 2.6875 -7.6931 -4.0509 46 1 1.9478 -3.7953 -3.8252 47 1 3.5396 -4.5510 -3.5732 48 1 2.2459 -5.8878 -5.6984 49 1 2.7850 -5.8457 -8.9900 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716070767.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:30 Heat of formation + Delta-G solvation = 80.051845 kcal Electronic energy + Delta-G solvation = -29854.090804 eV Core-core repulsion = 25853.808313 eV Total energy + Delta-G solvation = -4000.282491 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.35553 -40.45905 -38.34505 -36.43203 -35.54962 -34.55644 -33.83877 -31.66541 -31.56801 -29.78067 -28.72651 -27.53216 -27.41429 -24.69758 -24.61987 -23.61698 -22.49730 -21.58497 -20.75704 -20.47758 -19.48960 -18.35606 -17.96960 -17.19736 -16.63330 -16.10644 -15.92569 -15.53503 -15.08558 -14.92066 -14.73403 -14.52167 -14.01852 -13.78993 -13.61031 -13.57911 -13.21006 -13.04453 -12.98181 -12.52534 -12.50049 -12.31798 -11.97978 -11.73997 -11.67301 -11.52206 -11.50697 -11.41754 -11.12865 -11.01809 -11.00095 -10.93938 -10.64127 -10.50597 -10.46951 -10.28135 -10.09710 -10.05184 -9.82666 -9.29212 -9.01116 -7.06715 -5.89404 -3.19012 1.00466 1.57976 2.11153 2.13246 2.82483 3.33825 3.38800 3.41986 3.61243 3.86239 4.13839 4.18345 4.38259 4.43227 4.58282 4.62866 4.65676 4.73879 4.88815 4.91404 5.22611 5.30022 5.31980 5.38934 5.41677 5.49042 5.50057 5.50350 5.52810 5.57617 5.60926 5.70214 5.75816 5.84157 5.88678 5.89391 5.93138 5.95984 6.06546 6.12804 6.32159 6.38077 6.40107 6.56168 6.62704 7.14761 7.55901 7.79088 8.28818 8.46806 9.40619 9.97049 10.31147 11.33178 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010581 B = 0.003132 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.517931 B = 8937.709399 C =10924.683753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.013 4.013 3 C -0.144 4.144 4 C 0.205 3.795 5 N -0.301 5.301 6 N -0.075 5.075 7 N -0.087 5.087 8 N -0.293 5.293 9 C 0.089 3.911 10 C 0.500 3.500 11 O -0.523 6.523 12 N -0.706 5.706 13 C 0.150 3.850 14 H 0.090 0.910 15 C -0.132 4.132 16 C -0.126 4.126 17 C -0.113 4.113 18 C -0.107 4.107 19 H 0.090 0.910 20 C 0.165 3.835 21 N -0.729 5.729 22 C -0.244 4.244 23 H 0.070 0.930 24 C -0.011 4.011 25 N -0.930 5.930 26 Si 0.906 3.094 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.408 0.592 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.075 0.925 46 H 0.019 0.981 47 H 0.014 0.986 48 H 0.385 0.615 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.514 5.530 14.663 15.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 C -0.202 4.202 4 C -0.073 4.073 5 N -0.150 5.150 6 N -0.069 5.069 7 N -0.073 5.073 8 N -0.094 5.094 9 C -0.037 4.037 10 C 0.283 3.717 11 O -0.399 6.399 12 N -0.360 5.360 13 C 0.045 3.955 14 H 0.108 0.892 15 C -0.170 4.170 16 C -0.163 4.163 17 C -0.150 4.150 18 C -0.126 4.126 19 H 0.108 0.892 20 C 0.036 3.964 21 N -0.373 5.373 22 C -0.375 4.375 23 H 0.088 0.912 24 C -0.207 4.207 25 N -0.578 5.578 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.218 1.218 29 H -0.218 1.218 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.246 0.754 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.037 0.963 47 H 0.031 0.969 48 H 0.219 0.781 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.029 5.401 16.485 17.347 hybrid contribution 0.802 0.168 -2.105 2.259 sum 0.773 5.569 14.380 15.440 Atomic orbital electron populations 1.21824 0.91662 1.03274 1.03417 1.19826 0.97970 0.96097 0.89553 1.21853 1.01226 0.93369 1.03744 1.26112 0.94442 0.88738 0.97995 1.74949 1.19805 1.21871 0.98351 1.78591 1.06814 0.99015 1.22454 1.78870 1.20336 1.20817 0.87237 1.47843 1.34672 1.20063 1.06805 1.22042 0.99281 0.95901 0.86481 1.20235 0.87299 0.82764 0.81416 1.90810 1.26057 1.70690 1.52324 1.46170 1.24852 1.33681 1.31268 1.21712 0.93124 0.86314 0.94305 0.89168 1.22570 1.01822 0.94610 0.98020 1.22391 1.00919 0.97239 0.95787 1.22513 0.98873 0.95913 0.97727 1.22493 1.00788 0.96815 0.92509 0.89161 1.20570 0.95784 0.93991 0.86012 1.42335 1.72734 1.21628 1.00636 1.19217 1.31597 0.98406 0.88306 0.91199 1.24749 1.01595 0.97304 0.97084 1.69660 1.51263 1.22359 1.14539 0.86140 0.78551 0.80133 0.81446 1.20565 1.21806 1.21797 0.91895 0.91144 0.90727 0.88921 0.92363 0.90612 0.91003 0.83888 0.84068 0.75370 0.91508 0.91357 0.91789 0.91542 0.91401 0.90653 0.96286 0.96868 0.78127 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.18 37.16 0.34 -0.91 16 2 C -0.01 -0.11 3.26 -91.77 -0.30 -0.41 16 3 C -0.14 -0.98 9.18 37.16 0.34 -0.64 16 4 C 0.21 2.38 6.64 -155.43 -1.03 1.35 16 5 N -0.30 -4.30 12.36 32.70 0.40 -3.89 16 6 N -0.08 -1.17 13.43 60.35 0.81 -0.36 16 7 N -0.09 -1.24 13.29 60.35 0.80 -0.44 16 8 N -0.29 -3.36 2.83 -59.44 -0.17 -3.53 16 9 C 0.09 0.68 6.57 -5.19 -0.03 0.64 16 10 C 0.50 5.35 7.89 -10.99 -0.09 5.26 16 11 O -0.52 -7.89 16.11 5.55 0.09 -7.80 16 12 N -0.71 -6.97 4.38 -52.72 -0.23 -7.20 16 13 C 0.15 1.74 3.09 -66.81 -0.21 1.54 16 14 H 0.09 1.17 7.61 -51.93 -0.40 0.78 16 15 C -0.13 -1.42 6.58 -25.61 -0.17 -1.59 16 16 C -0.13 -1.33 6.83 -25.07 -0.17 -1.50 16 17 C -0.11 -1.43 6.19 -24.74 -0.15 -1.59 16 18 C -0.11 -1.43 2.85 -88.96 -0.25 -1.69 16 19 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 20 C 0.16 2.71 4.72 -4.04 -0.02 2.70 16 21 N -0.73 -16.46 5.49 -59.91 -0.33 -16.79 16 22 C -0.24 -6.26 9.99 -15.06 -0.15 -6.41 16 23 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 24 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 25 N -0.93 -26.61 13.06 55.49 0.72 -25.88 16 26 Si 0.91 21.06 29.55 -169.99 -5.02 16.04 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.63 6.84 -51.93 -0.36 0.27 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.14 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.14 0.59 7.12 -51.93 -0.37 0.22 16 39 H 0.41 3.40 6.50 -40.82 -0.27 3.14 16 40 H 0.07 0.72 7.92 -51.93 -0.41 0.31 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.87 7.97 -51.93 -0.41 0.45 16 45 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.01 0.21 6.40 -51.93 -0.33 -0.12 16 48 H 0.38 9.31 7.64 -40.82 -0.31 9.00 16 49 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 400.26 15.07 6.03 6.03 Total: -1.00 -34.21 400.26 -6.77 -40.98 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -7.90 Total: 6.47 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -1.99 Total: -3.63 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: 2.01 Total: -58.09 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: 0.09 Total: -7.80 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.21 -6.77 -40.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716070767.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.033 kcal (2) G-P(sol) polarization free energy of solvation -34.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds