Wall clock time and date at job start Tue Mar 31 2020 19:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47449 * 2 1 4 4 C 1.50697 * 109.47114 * 120.00011 * 2 1 3 5 5 N 1.31073 * 126.65998 * 300.17243 * 4 2 1 6 6 N 1.28846 * 107.99066 * 180.24256 * 5 4 2 7 7 N 1.28737 * 109.39633 * 359.75161 * 6 5 4 8 8 N 1.29018 * 108.80714 * 0.02562 * 7 6 5 9 9 C 1.46509 * 126.43694 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47002 * 90.01922 * 9 8 7 11 11 O 1.21283 * 120.00472 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99538 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 9 14 14 H 1.09000 * 110.02007 * 35.21543 * 13 12 10 15 15 C 1.53884 * 110.03428 * 273.82208 * 13 12 10 16 16 C 1.54259 * 106.60140 * 240.71862 * 15 13 12 17 17 C 1.54894 * 104.19724 * 23.60476 * 16 15 13 18 18 C 1.54262 * 110.03309 * 156.66022 * 13 12 10 19 19 H 1.09005 * 110.48630 * 214.35636 * 18 13 12 20 20 C 1.53000 * 110.48483 * 336.99216 * 18 13 12 21 21 N 1.46499 * 109.47351 * 184.99802 * 20 18 13 22 22 C 1.36939 * 120.00237 * 179.97438 * 21 20 18 23 23 H 1.08000 * 119.99739 * 0.02562 * 22 21 20 24 24 C 1.38815 * 120.00047 * 180.02562 * 22 21 20 25 25 N 1.31615 * 119.99968 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99827 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47306 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47193 * 120.00092 * 26 24 22 29 29 H 1.48500 * 109.46755 * 239.99819 * 26 24 22 30 30 H 1.08997 * 109.47524 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46994 * 300.00289 * 1 2 3 32 32 H 1.08998 * 109.46944 * 59.99944 * 1 2 3 33 33 H 1.08997 * 109.47276 * 239.99905 * 2 1 3 34 34 H 1.08999 * 109.47473 * 180.02562 * 3 2 1 35 35 H 1.09007 * 109.47168 * 300.00110 * 3 2 1 36 36 H 1.08997 * 109.46959 * 59.99711 * 3 2 1 37 37 H 1.09003 * 109.46564 * 330.02349 * 9 8 7 38 38 H 1.08993 * 109.46901 * 210.02685 * 9 8 7 39 39 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 40 40 H 1.08998 * 110.02954 * 0.02562 * 15 13 12 41 41 H 1.09001 * 110.02844 * 121.42802 * 15 13 12 42 42 H 1.08990 * 110.49077 * 142.28926 * 16 15 13 43 43 H 1.09001 * 110.48321 * 264.79865 * 16 15 13 44 44 H 1.09002 * 110.74601 * 80.37330 * 17 16 15 45 45 H 1.08993 * 110.75742 * 203.55887 * 17 16 15 46 46 H 1.08994 * 109.47205 * 305.00501 * 20 18 13 47 47 H 1.09006 * 109.46795 * 65.00337 * 20 18 13 48 48 H 0.97001 * 120.00057 * 0.02562 * 21 20 18 49 49 H 0.97002 * 120.00067 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7949 -0.3802 2.4765 6 7 2.4015 -1.2268 3.2350 7 7 3.0153 -2.0916 2.5052 8 7 2.8096 -1.8087 1.2633 9 6 3.3290 -2.5421 0.1062 10 6 2.3501 -3.6182 -0.2871 11 8 1.3199 -3.7586 0.3372 12 7 2.6192 -4.4241 -1.3334 13 6 1.6704 -5.4741 -1.7121 14 1 0.6491 -5.1322 -1.5450 15 6 1.9402 -6.7487 -0.8931 16 6 2.2902 -7.8579 -1.9064 17 6 2.7993 -7.0887 -3.1508 18 6 1.8660 -5.8535 -3.1945 19 1 0.9108 -6.1130 -3.6511 20 6 2.5314 -4.7063 -3.9575 21 7 2.5981 -5.0411 -5.3821 22 6 3.1568 -4.1584 -6.2676 23 1 3.5486 -3.2156 -5.9155 24 6 3.2195 -4.4755 -7.6175 25 7 2.7416 -5.6243 -8.0466 26 14 3.9822 -3.2717 -8.8252 27 1 4.4408 -2.0622 -8.0957 28 1 5.1400 -3.9128 -9.4987 29 1 2.9716 -2.8828 -9.8414 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 4.2853 -2.9973 0.3640 38 1 3.4672 -1.8540 -0.7278 39 1 3.4430 -4.3116 -1.8330 40 1 2.7767 -6.5857 -0.2136 41 1 1.0494 -7.0256 -0.3292 42 1 3.0738 -8.5034 -1.5099 43 1 1.4040 -8.4426 -2.1531 44 1 3.8375 -6.7840 -3.0183 45 1 2.6875 -7.6931 -4.0509 46 1 1.9478 -3.7953 -3.8252 47 1 3.5396 -4.5510 -3.5732 48 1 2.2459 -5.8878 -5.6984 49 1 2.7850 -5.8457 -8.9900 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716070767.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:29 Heat of formation + Delta-G solvation = 56.545120 kcal Electronic energy + Delta-G solvation = -29855.110132 eV Core-core repulsion = 25853.808313 eV Total energy + Delta-G solvation = -4001.301819 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.30175 -41.39848 -39.37517 -37.16828 -36.46107 -36.19297 -34.78252 -33.27761 -32.55970 -30.64535 -30.13560 -28.33899 -28.13074 -26.29196 -25.49206 -24.57695 -24.02345 -22.44242 -21.55451 -21.43157 -20.58542 -19.42246 -18.97633 -18.65563 -17.61121 -16.95514 -16.82289 -16.62435 -16.29294 -16.14464 -15.60715 -15.45392 -15.22451 -15.11094 -14.71992 -14.54202 -14.40426 -14.21461 -13.82287 -13.58466 -13.23486 -13.10930 -13.09677 -12.84532 -12.70678 -12.68826 -12.49142 -12.31954 -12.29518 -12.28085 -12.10053 -11.98302 -11.90692 -11.80603 -11.64195 -11.53469 -11.47149 -11.22654 -10.96084 -10.87384 -10.21196 -8.93664 -7.90347 -5.18049 0.08715 0.81460 1.12331 1.30932 1.51900 1.52722 1.61736 2.00215 2.59897 2.86250 3.14071 3.33256 3.45238 3.51822 3.58885 3.67692 3.87253 3.89667 4.00137 4.04222 4.18753 4.20048 4.36740 4.38435 4.50721 4.54576 4.56207 4.63112 4.70738 4.76296 4.76317 4.81781 4.83869 4.88696 4.93512 5.03285 5.10295 5.12586 5.22361 5.25997 5.27218 5.33588 5.37058 5.47967 5.49212 5.57087 6.30763 6.33611 6.98501 7.39102 7.47822 8.16145 8.36726 9.33522 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010581 B = 0.003132 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.517931 B = 8937.709399 C =10924.683753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.013 4.013 3 C -0.139 4.139 4 C 0.209 3.791 5 N -0.328 5.328 6 N -0.107 5.107 7 N -0.101 5.101 8 N -0.290 5.290 9 C 0.083 3.917 10 C 0.504 3.496 11 O -0.571 6.571 12 N -0.696 5.696 13 C 0.159 3.841 14 H 0.076 0.924 15 C -0.125 4.125 16 C -0.116 4.116 17 C -0.110 4.110 18 C -0.098 4.098 19 H 0.075 0.925 20 C 0.164 3.836 21 N -0.744 5.744 22 C -0.236 4.236 23 H 0.083 0.917 24 C -0.077 4.077 25 N -0.971 5.971 26 Si 0.967 3.033 27 H -0.260 1.260 28 H -0.298 1.298 29 H -0.300 1.300 30 H 0.039 0.961 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.117 0.883 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.058 0.942 37 H 0.176 0.824 38 H 0.185 0.815 39 H 0.419 0.581 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.054 0.946 46 H 0.021 0.979 47 H 0.039 0.961 48 H 0.373 0.627 49 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.047 6.771 14.574 16.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.035 4.035 3 C -0.198 4.198 4 C -0.069 4.069 5 N -0.176 5.176 6 N -0.100 5.100 7 N -0.087 5.087 8 N -0.091 5.091 9 C -0.040 4.040 10 C 0.288 3.712 11 O -0.449 6.449 12 N -0.350 5.350 13 C 0.054 3.946 14 H 0.094 0.906 15 C -0.164 4.164 16 C -0.154 4.154 17 C -0.148 4.148 18 C -0.118 4.118 19 H 0.094 0.906 20 C 0.037 3.963 21 N -0.386 5.386 22 C -0.368 4.368 23 H 0.101 0.899 24 C -0.269 4.269 25 N -0.622 5.622 26 Si 0.797 3.203 27 H -0.184 1.184 28 H -0.226 1.226 29 H -0.228 1.228 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.135 0.865 34 H 0.084 0.916 35 H 0.114 0.886 36 H 0.077 0.923 37 H 0.194 0.806 38 H 0.202 0.798 39 H 0.259 0.741 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.073 0.927 46 H 0.039 0.961 47 H 0.056 0.944 48 H 0.205 0.795 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.541 6.669 16.429 17.797 hybrid contribution 0.282 -0.232 -2.049 2.082 sum 1.822 6.437 14.379 15.859 Atomic orbital electron populations 1.21809 0.92145 1.01923 1.04080 1.20092 0.97497 0.97065 0.88824 1.21846 1.01656 0.92115 1.04142 1.26696 0.93448 0.88542 0.98175 1.74867 1.20603 1.22497 0.99663 1.78552 1.07983 0.99918 1.23589 1.78764 1.20635 1.20836 0.88475 1.48075 1.34226 1.19993 1.06787 1.22525 0.99081 0.95869 0.86560 1.20675 0.87006 0.82868 0.80620 1.90810 1.28286 1.72023 1.53828 1.46020 1.24742 1.33047 1.31187 1.21479 0.92980 0.87234 0.92948 0.90598 1.22507 1.01971 0.94046 0.97862 1.22327 1.01401 0.97114 0.94553 1.22453 0.98927 0.95525 0.97866 1.22335 1.00009 0.96243 0.93191 0.90618 1.20764 0.97248 0.94969 0.83273 1.42579 1.72364 1.20780 1.02875 1.19687 1.29534 0.98799 0.88753 0.89873 1.25511 1.03365 0.98968 0.99067 1.69814 1.53740 1.24411 1.14218 0.85161 0.77085 0.78864 0.79188 1.18402 1.22566 1.22798 0.94156 0.92132 0.88463 0.86548 0.91639 0.88557 0.92274 0.80615 0.79813 0.74120 0.90905 0.91555 0.90336 0.91353 0.90979 0.92726 0.96126 0.94379 0.79546 0.94272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.18 71.98 0.66 -1.61 16 2 C -0.01 -0.19 3.26 -11.54 -0.04 -0.23 16 3 C -0.14 -1.52 9.18 71.98 0.66 -0.86 16 4 C 0.21 4.57 6.64 138.13 0.92 5.49 16 5 N -0.33 -9.32 12.36 -50.45 -0.62 -9.94 16 6 N -0.11 -3.35 13.43 37.01 0.50 -2.86 16 7 N -0.10 -2.80 13.29 37.02 0.49 -2.31 16 8 N -0.29 -6.08 2.83 -341.97 -0.97 -7.05 16 9 C 0.08 0.96 6.57 85.63 0.56 1.53 16 10 C 0.50 9.49 7.89 87.66 0.69 10.19 16 11 O -0.57 -16.61 16.11 -3.04 -0.05 -16.65 16 12 N -0.70 -11.74 4.38 -439.10 -1.92 -13.66 16 13 C 0.16 3.43 3.09 45.72 0.14 3.57 16 14 H 0.08 1.91 7.61 -2.39 -0.02 1.89 16 15 C -0.13 -2.47 6.58 31.32 0.21 -2.27 16 16 C -0.12 -2.25 6.83 31.67 0.22 -2.03 16 17 C -0.11 -2.65 6.19 31.89 0.20 -2.46 16 18 C -0.10 -2.52 2.85 -9.72 -0.03 -2.55 16 19 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 20 C 0.16 5.05 4.72 86.38 0.41 5.46 16 21 N -0.74 -32.83 5.49 -343.45 -1.89 -34.71 16 22 C -0.24 -11.71 9.99 84.03 0.84 -10.87 16 23 H 0.08 3.84 7.83 -2.91 -0.02 3.81 16 24 C -0.08 -4.10 5.50 84.86 0.47 -3.63 16 25 N -0.97 -56.22 13.06 21.65 0.28 -55.94 16 26 Si 0.97 42.78 29.55 68.60 2.03 44.81 16 27 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 28 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16 29 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 30 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.12 1.10 6.84 -2.39 -0.02 1.09 16 34 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.18 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.18 0.54 7.12 -2.39 -0.02 0.53 16 39 H 0.42 5.33 6.50 -92.71 -0.60 4.72 16 40 H 0.07 1.37 7.92 -2.39 -0.02 1.35 16 41 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.07 1.68 7.97 -2.39 -0.02 1.66 16 45 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.04 1.02 6.40 -2.38 -0.02 1.01 16 48 H 0.37 18.14 7.64 -92.71 -0.71 17.43 16 49 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -76.34 400.26 3.41 -72.93 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: -0.34 Total: 25.66 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 5.90 Total: -0.28 kcal Atomic # 7 Polarization: -122.34 SS G_CDS: -4.13 Total: -126.47 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.05 Total: -16.65 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -76.34 3.41 -72.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716070767.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.474 kcal (2) G-P(sol) polarization free energy of solvation -76.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds