Wall clock time and date at job start Tue Mar 31 2020 19:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99806 * 2 1 4 4 C 1.53003 * 109.47047 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46601 * 65.00137 * 4 3 2 6 6 C 1.36935 * 120.00491 * 269.99869 * 5 4 3 7 7 H 1.07994 * 120.00308 * 141.80418 * 6 5 4 8 8 C 1.38816 * 119.99902 * 321.80243 * 6 5 4 9 9 N 1.31626 * 119.99653 * 339.27959 * 8 6 5 10 10 Si 1.86795 * 120.00249 * 159.27598 * 8 6 5 11 11 H 1.48500 * 109.47173 * 90.00238 * 10 8 6 12 12 H 1.48497 * 109.47280 * 210.00128 * 10 8 6 13 13 H 1.48501 * 109.47090 * 330.00478 * 10 8 6 14 14 C 1.46508 * 119.99816 * 89.99962 * 5 4 3 15 15 C 1.53040 * 109.45832 * 124.70229 * 14 5 4 16 16 C 1.53187 * 109.31284 * 181.38611 * 15 14 5 17 17 N 1.46926 * 108.77586 * 305.36546 * 16 15 14 18 18 C 1.34775 * 120.63080 * 233.58369 * 17 16 15 19 19 O 1.21279 * 120.00545 * 0.02562 * 18 17 16 20 20 C 1.50704 * 119.99843 * 179.72458 * 18 17 16 21 21 C 1.50704 * 109.46989 * 180.02562 * 20 18 17 22 22 N 1.30500 * 125.64722 * 305.02424 * 21 20 18 23 23 C 1.34133 * 109.25162 * 180.02562 * 22 21 20 24 24 C 1.34666 * 108.02092 * 359.97438 * 23 22 21 25 25 N 1.35045 * 125.65165 * 124.72083 * 21 20 18 26 26 H 0.96999 * 126.39509 * 359.97438 * 25 21 20 27 27 C 1.46924 * 118.73901 * 53.86239 * 17 16 15 28 28 C 1.53038 * 109.46153 * 244.77029 * 14 5 4 29 29 H 1.08999 * 109.47009 * 60.00403 * 1 2 3 30 30 H 1.09004 * 109.46941 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47194 * 299.99555 * 1 2 3 32 32 H 1.09003 * 109.46811 * 60.00163 * 3 2 1 33 33 H 1.08995 * 109.47268 * 300.00291 * 3 2 1 34 34 H 1.09001 * 109.47399 * 305.00528 * 4 3 2 35 35 H 1.08997 * 109.46836 * 185.00111 * 4 3 2 36 36 H 0.96997 * 119.99676 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.45976 * 4.73080 * 14 5 4 38 38 H 1.09001 * 109.49693 * 61.43403 * 15 14 5 39 39 H 1.08999 * 109.52779 * 301.35734 * 15 14 5 40 40 H 1.09003 * 109.59224 * 185.57767 * 16 15 14 41 41 H 1.09003 * 109.70571 * 65.22523 * 16 15 14 42 42 H 1.08999 * 109.46936 * 300.00107 * 20 18 17 43 43 H 1.08998 * 109.47291 * 60.00534 * 20 18 17 44 44 H 1.08005 * 125.98667 * 180.02562 * 23 22 21 45 45 H 1.08005 * 126.58835 * 180.02562 * 24 23 22 46 46 H 1.08993 * 109.59107 * 65.92290 * 27 17 16 47 47 H 1.08997 * 109.58862 * 186.35605 * 27 17 16 48 48 H 1.08996 * 109.49893 * 298.56772 * 28 14 5 49 49 H 1.08998 * 109.49467 * 58.62807 * 28 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.0977 -0.7974 -1.3346 7 1 3.8136 -1.3101 -2.2416 8 6 4.5858 -1.5185 -0.2535 9 7 5.3001 -0.9140 0.6722 10 14 4.2290 -3.3466 -0.1125 11 1 5.3032 -4.1145 -0.7919 12 1 4.1760 -3.7315 1.3207 13 1 2.9240 -3.6472 -0.7544 14 6 4.2881 1.4000 -2.4130 15 6 5.7094 1.0967 -2.8929 16 6 6.0441 1.9969 -4.0863 17 7 5.0097 1.8224 -5.1151 18 6 5.3467 1.5045 -6.3807 19 8 6.5131 1.3594 -6.6795 20 6 4.2737 1.3228 -7.4232 21 6 4.9103 0.9736 -8.7437 22 7 5.8325 1.6692 -9.3511 23 6 6.1611 1.0601 -10.5000 24 6 5.4147 -0.0556 -10.6084 25 7 4.6252 -0.1139 -9.4919 26 1 3.9798 -0.8060 -9.2788 27 6 3.6014 2.0071 -4.7393 28 6 3.2937 1.1012 -3.5373 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6885 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.8508 0.5685 0.8426 35 1 3.9784 2.1766 0.0902 36 1 5.6414 -1.4180 1.4274 37 1 4.2156 2.4512 -2.1341 38 1 5.7759 0.0517 -3.1955 39 1 6.4152 1.2869 -2.0844 40 1 7.0156 1.7173 -4.4939 41 1 6.0685 3.0384 -3.7656 42 1 3.6041 0.5183 -7.1190 43 1 3.7068 2.2481 -7.5262 44 1 6.8962 1.4037 -11.2128 45 1 5.4380 -0.7695 -11.4185 46 1 3.4288 3.0487 -4.4689 47 1 2.9607 1.7340 -5.5778 48 1 3.3830 0.0562 -3.8339 49 1 2.2798 1.2946 -3.1870 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716716250.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:12 Heat of formation + Delta-G solvation = 9.927286 kcal Electronic energy + Delta-G solvation = -30173.064776 eV Core-core repulsion = 26137.448705 eV Total energy + Delta-G solvation = -4035.616071 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.10695 -39.79598 -37.62386 -36.80948 -34.90124 -32.65233 -32.45403 -31.76418 -30.58474 -30.43318 -28.24498 -27.32683 -25.68959 -24.73964 -23.24208 -22.71878 -21.65925 -21.20147 -20.58036 -19.89209 -18.78693 -17.89484 -17.12330 -16.26231 -15.78776 -15.53570 -15.43534 -15.05742 -14.79930 -14.71366 -14.15257 -14.04303 -13.94092 -13.87519 -13.57992 -13.46037 -13.30020 -13.11780 -12.77713 -12.38079 -12.02471 -11.98318 -11.75499 -11.53012 -11.32693 -10.91842 -10.79202 -10.74671 -10.61011 -10.45471 -10.09647 -10.06287 -9.97565 -9.88104 -9.78976 -9.54968 -9.44827 -8.84437 -8.48462 -8.36271 -8.30471 -6.49199 -5.69501 -3.25755 1.92484 2.83736 2.85609 3.11748 3.41130 3.43126 3.50481 3.55141 4.22297 4.55346 4.66524 4.68394 4.78287 5.03640 5.12985 5.15926 5.21141 5.35475 5.46809 5.51608 5.55856 5.59300 5.71247 5.72040 5.75871 5.89915 5.98497 5.99419 6.02369 6.09381 6.11145 6.18437 6.29541 6.39750 6.49291 6.60913 6.67431 6.68196 6.75244 6.84203 7.14993 7.22431 7.25557 7.65567 7.65906 7.91198 8.05895 8.07955 8.42077 8.62205 9.26481 9.90458 10.45843 11.32344 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014297 B = 0.002940 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.968062 B = 9523.073843 C = 9876.145698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.353 6.353 3 C 0.047 3.953 4 C 0.144 3.856 5 N -0.572 5.572 6 C -0.234 4.234 7 H 0.053 0.947 8 C 0.020 3.980 9 N -0.892 5.892 10 Si 0.894 3.106 11 H -0.291 1.291 12 H -0.292 1.292 13 H -0.279 1.279 14 C 0.177 3.823 15 C -0.130 4.130 16 C 0.114 3.886 17 N -0.606 5.606 18 C 0.519 3.481 19 O -0.523 6.523 20 C -0.055 4.055 21 C 0.222 3.778 22 N -0.462 5.462 23 C -0.028 4.028 24 C -0.059 4.059 25 N -0.567 5.567 26 H 0.418 0.582 27 C 0.107 3.893 28 C -0.141 4.141 29 H 0.028 0.972 30 H 0.073 0.927 31 H 0.026 0.974 32 H 0.023 0.977 33 H 0.026 0.974 34 H 0.102 0.898 35 H 0.039 0.961 36 H 0.252 0.748 37 H 0.046 0.954 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.059 0.941 42 H 0.106 0.894 43 H 0.117 0.883 44 H 0.168 0.832 45 H 0.176 0.824 46 H 0.066 0.934 47 H 0.073 0.927 48 H 0.067 0.933 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.757 5.501 -14.097 17.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C -0.032 4.032 4 C 0.017 3.983 5 N -0.290 5.290 6 C -0.364 4.364 7 H 0.071 0.929 8 C -0.180 4.180 9 N -0.535 5.535 10 Si 0.724 3.276 11 H -0.219 1.219 12 H -0.218 1.218 13 H -0.205 1.205 14 C 0.069 3.931 15 C -0.170 4.170 16 C -0.009 4.009 17 N -0.340 5.340 18 C 0.304 3.696 19 O -0.398 6.398 20 C -0.097 4.097 21 C -0.042 4.042 22 N -0.181 5.181 23 C -0.177 4.177 24 C -0.193 4.193 25 N -0.170 5.170 26 H 0.255 0.745 27 C -0.016 4.016 28 C -0.182 4.182 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.041 0.959 33 H 0.045 0.955 34 H 0.120 0.880 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.078 0.922 42 H 0.125 0.875 43 H 0.135 0.865 44 H 0.185 0.815 45 H 0.193 0.807 46 H 0.084 0.916 47 H 0.092 0.908 48 H 0.086 0.914 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.530 5.947 -13.814 16.396 hybrid contribution -1.295 -1.951 -0.050 2.342 sum -7.825 3.996 -13.864 16.413 Atomic orbital electron populations 1.22625 0.84396 1.01400 0.98331 1.88231 1.16391 1.27696 1.94794 1.23458 0.99014 0.84049 0.96678 1.21033 0.87344 0.96580 0.93341 1.43724 1.75210 1.02683 1.07408 1.18647 1.35780 0.81549 1.00378 0.92903 1.25021 0.96465 0.97343 0.99137 1.69951 1.34623 1.35557 1.13383 0.86460 0.78129 0.86207 0.76828 1.21862 1.21770 1.20462 1.20327 0.91261 0.93463 0.88052 1.22237 0.99144 1.00022 0.95559 1.21737 0.91478 0.99457 0.88179 1.48095 1.08020 1.69354 1.08540 1.19977 0.89686 0.77374 0.82553 1.90743 1.19536 1.49859 1.79696 1.19994 0.97447 1.04700 0.87545 1.22411 0.98683 0.87085 0.96052 1.70254 1.11343 1.30064 1.06401 1.22377 1.03232 0.94981 0.97069 1.22707 0.99463 1.03533 0.93608 1.43238 1.33809 1.21734 1.18230 0.74489 1.21934 0.80965 1.00210 0.98504 1.22490 1.00587 0.99782 0.95301 0.95385 0.90826 0.95585 0.95932 0.95543 0.88003 0.94274 0.93834 0.93561 0.91121 0.90867 0.89760 0.92226 0.87548 0.86513 0.81455 0.80711 0.91596 0.90833 0.91379 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.35 -7.41 10.18 -35.23 -0.36 -7.76 16 3 C 0.05 0.90 6.28 37.16 0.23 1.13 16 4 C 0.14 3.14 5.70 -4.04 -0.02 3.11 16 5 N -0.57 -12.85 2.34 -165.61 -0.39 -13.24 16 6 C -0.23 -5.99 7.60 -15.06 -0.11 -6.10 16 7 H 0.05 1.39 7.09 -52.49 -0.37 1.02 16 8 C 0.02 0.53 4.97 -17.43 -0.09 0.45 16 9 N -0.89 -24.99 11.47 55.49 0.64 -24.35 16 10 Si 0.89 21.89 29.60 -169.99 -5.03 16.86 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.18 3.26 2.59 -67.89 -0.18 3.08 16 15 C -0.13 -2.44 5.23 -26.61 -0.14 -2.58 16 16 C 0.11 1.83 6.43 -3.71 -0.02 1.80 16 17 N -0.61 -8.83 2.97 -172.51 -0.51 -9.34 16 18 C 0.52 8.00 7.69 -10.98 -0.08 7.91 16 19 O -0.52 -10.35 14.97 5.56 0.08 -10.27 16 20 C -0.06 -0.61 4.67 -29.03 -0.14 -0.75 16 21 C 0.22 2.89 6.96 -155.41 -1.08 1.81 16 22 N -0.46 -7.18 10.58 -10.81 -0.11 -7.30 16 23 C -0.03 -0.35 11.87 -17.81 -0.21 -0.56 16 24 C -0.06 -0.58 12.04 -16.57 -0.20 -0.78 16 25 N -0.57 -5.59 6.15 -10.23 -0.06 -5.66 16 26 H 0.42 2.68 8.96 -40.82 -0.37 2.31 16 27 C 0.11 1.29 6.37 -3.49 -0.02 1.27 16 28 C -0.14 -2.20 5.39 -26.39 -0.14 -2.35 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.10 2.62 5.54 -51.93 -0.29 2.33 16 35 H 0.04 0.79 7.88 -51.93 -0.41 0.38 16 36 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 37 H 0.05 0.80 7.77 -51.93 -0.40 0.40 16 38 H 0.07 1.53 7.62 -51.93 -0.40 1.13 16 39 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.08 1.48 7.01 -51.93 -0.36 1.11 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.11 0.88 7.71 -51.93 -0.40 0.48 16 43 H 0.12 1.03 7.92 -51.93 -0.41 0.62 16 44 H 0.17 1.66 8.06 -52.48 -0.42 1.23 16 45 H 0.18 1.03 8.06 -52.48 -0.42 0.61 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.07 0.67 5.93 -51.93 -0.31 0.36 16 48 H 0.07 1.21 7.24 -51.93 -0.38 0.83 16 49 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 392.75 15.07 5.92 5.92 Total: -1.00 -34.92 392.75 -8.80 -43.72 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -7.88 Total: 2.38 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: -1.09 Total: 9.04 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: -0.44 Total: -59.88 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.28 Total: -18.03 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.92 -8.80 -43.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716716250.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.649 kcal (2) G-P(sol) polarization free energy of solvation -34.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds