Wall clock time and date at job start Tue Mar 31 2020 19:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99806 * 2 1 4 4 C 1.53003 * 109.47047 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46601 * 65.00137 * 4 3 2 6 6 C 1.36935 * 120.00491 * 269.99869 * 5 4 3 7 7 H 1.07994 * 120.00308 * 141.80418 * 6 5 4 8 8 C 1.38816 * 119.99902 * 321.80243 * 6 5 4 9 9 N 1.31626 * 119.99653 * 339.27959 * 8 6 5 10 10 Si 1.86795 * 120.00249 * 159.27598 * 8 6 5 11 11 H 1.48500 * 109.47173 * 90.00238 * 10 8 6 12 12 H 1.48497 * 109.47280 * 210.00128 * 10 8 6 13 13 H 1.48501 * 109.47090 * 330.00478 * 10 8 6 14 14 C 1.46508 * 119.99816 * 89.99962 * 5 4 3 15 15 C 1.53040 * 109.45832 * 124.70229 * 14 5 4 16 16 C 1.53187 * 109.31284 * 181.38611 * 15 14 5 17 17 N 1.46926 * 108.77586 * 305.36546 * 16 15 14 18 18 C 1.34775 * 120.63080 * 233.58369 * 17 16 15 19 19 O 1.21279 * 120.00545 * 0.02562 * 18 17 16 20 20 C 1.50704 * 119.99843 * 179.72458 * 18 17 16 21 21 C 1.50704 * 109.46989 * 180.02562 * 20 18 17 22 22 N 1.30500 * 125.64722 * 305.02424 * 21 20 18 23 23 C 1.34133 * 109.25162 * 180.02562 * 22 21 20 24 24 C 1.34666 * 108.02092 * 359.97438 * 23 22 21 25 25 N 1.35045 * 125.65165 * 124.72083 * 21 20 18 26 26 H 0.96999 * 126.39509 * 359.97438 * 25 21 20 27 27 C 1.46924 * 118.73901 * 53.86239 * 17 16 15 28 28 C 1.53038 * 109.46153 * 244.77029 * 14 5 4 29 29 H 1.08999 * 109.47009 * 60.00403 * 1 2 3 30 30 H 1.09004 * 109.46941 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47194 * 299.99555 * 1 2 3 32 32 H 1.09003 * 109.46811 * 60.00163 * 3 2 1 33 33 H 1.08995 * 109.47268 * 300.00291 * 3 2 1 34 34 H 1.09001 * 109.47399 * 305.00528 * 4 3 2 35 35 H 1.08997 * 109.46836 * 185.00111 * 4 3 2 36 36 H 0.96997 * 119.99676 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.45976 * 4.73080 * 14 5 4 38 38 H 1.09001 * 109.49693 * 61.43403 * 15 14 5 39 39 H 1.08999 * 109.52779 * 301.35734 * 15 14 5 40 40 H 1.09003 * 109.59224 * 185.57767 * 16 15 14 41 41 H 1.09003 * 109.70571 * 65.22523 * 16 15 14 42 42 H 1.08999 * 109.46936 * 300.00107 * 20 18 17 43 43 H 1.08998 * 109.47291 * 60.00534 * 20 18 17 44 44 H 1.08005 * 125.98667 * 180.02562 * 23 22 21 45 45 H 1.08005 * 126.58835 * 180.02562 * 24 23 22 46 46 H 1.08993 * 109.59107 * 65.92290 * 27 17 16 47 47 H 1.08997 * 109.58862 * 186.35605 * 27 17 16 48 48 H 1.08996 * 109.49893 * 298.56772 * 28 14 5 49 49 H 1.08998 * 109.49467 * 58.62807 * 28 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.0977 -0.7974 -1.3346 7 1 3.8136 -1.3101 -2.2416 8 6 4.5858 -1.5185 -0.2535 9 7 5.3001 -0.9140 0.6722 10 14 4.2290 -3.3466 -0.1125 11 1 5.3032 -4.1145 -0.7919 12 1 4.1760 -3.7315 1.3207 13 1 2.9240 -3.6472 -0.7544 14 6 4.2881 1.4000 -2.4130 15 6 5.7094 1.0967 -2.8929 16 6 6.0441 1.9969 -4.0863 17 7 5.0097 1.8224 -5.1151 18 6 5.3467 1.5045 -6.3807 19 8 6.5131 1.3594 -6.6795 20 6 4.2737 1.3228 -7.4232 21 6 4.9103 0.9736 -8.7437 22 7 5.8325 1.6692 -9.3511 23 6 6.1611 1.0601 -10.5000 24 6 5.4147 -0.0556 -10.6084 25 7 4.6252 -0.1139 -9.4919 26 1 3.9798 -0.8060 -9.2788 27 6 3.6014 2.0071 -4.7393 28 6 3.2937 1.1012 -3.5373 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6885 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.8508 0.5685 0.8426 35 1 3.9784 2.1766 0.0902 36 1 5.6414 -1.4180 1.4274 37 1 4.2156 2.4512 -2.1341 38 1 5.7759 0.0517 -3.1955 39 1 6.4152 1.2869 -2.0844 40 1 7.0156 1.7173 -4.4939 41 1 6.0685 3.0384 -3.7656 42 1 3.6041 0.5183 -7.1190 43 1 3.7068 2.2481 -7.5262 44 1 6.8962 1.4037 -11.2128 45 1 5.4380 -0.7695 -11.4185 46 1 3.4288 3.0487 -4.4689 47 1 2.9607 1.7340 -5.5778 48 1 3.3830 0.0562 -3.8339 49 1 2.2798 1.2946 -3.1870 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716716250.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:11 Heat of formation + Delta-G solvation = -14.245720 kcal Electronic energy + Delta-G solvation = -30174.112996 eV Core-core repulsion = 26137.448705 eV Total energy + Delta-G solvation = -4036.664291 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.94076 -41.01293 -39.11228 -38.21137 -36.46196 -33.91144 -33.40013 -33.19772 -32.09312 -31.67378 -29.76434 -28.33260 -27.10726 -26.29469 -24.70887 -24.01645 -22.56606 -22.41522 -21.90116 -21.26334 -20.00247 -18.76493 -18.41441 -17.88262 -17.24365 -16.77183 -16.58603 -16.51931 -16.45724 -15.73220 -15.60703 -15.43032 -15.18585 -15.08611 -14.78961 -14.69774 -14.53589 -14.19010 -13.85626 -13.65607 -13.37694 -13.26542 -13.14372 -12.98305 -12.84644 -12.71318 -12.50224 -12.30603 -12.19832 -12.02219 -11.77537 -11.52375 -11.42278 -11.05369 -10.96195 -10.88188 -10.76610 -10.36330 -10.24990 -9.54542 -9.30524 -8.38676 -7.68262 -5.26625 1.11087 1.44390 1.48475 1.56156 1.70786 1.93572 2.28580 2.44181 2.59600 3.27247 3.36919 3.43561 3.64559 3.73794 4.03741 4.09470 4.22534 4.31566 4.40125 4.43038 4.45360 4.48393 4.52699 4.58235 4.61355 4.68677 4.70517 4.79428 4.80272 4.87340 4.88108 4.90634 4.95334 4.98396 5.06025 5.18155 5.18684 5.29375 5.53493 5.67222 5.73888 5.79781 5.86311 5.91153 6.48029 6.56131 6.59586 6.74403 7.24057 7.27025 7.33664 8.03507 8.52369 9.27808 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014297 B = 0.002940 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.968062 B = 9523.073843 C = 9876.145698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.057 3.943 4 C 0.140 3.860 5 N -0.584 5.584 6 C -0.214 4.214 7 H 0.043 0.957 8 C -0.030 4.030 9 N -0.921 5.921 10 Si 0.936 3.064 11 H -0.295 1.295 12 H -0.298 1.298 13 H -0.275 1.275 14 C 0.171 3.829 15 C -0.117 4.117 16 C 0.124 3.876 17 N -0.606 5.606 18 C 0.512 3.488 19 O -0.576 6.576 20 C -0.047 4.047 21 C 0.200 3.800 22 N -0.513 5.513 23 C -0.068 4.068 24 C -0.037 4.037 25 N -0.556 5.556 26 H 0.435 0.565 27 C 0.112 3.888 28 C -0.129 4.129 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.243 0.757 37 H 0.066 0.934 38 H 0.033 0.967 39 H 0.045 0.955 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.140 0.860 43 H 0.146 0.854 44 H 0.178 0.822 45 H 0.216 0.784 46 H 0.092 0.908 47 H 0.115 0.885 48 H 0.042 0.958 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.888 6.345 -16.123 20.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C -0.021 4.021 4 C 0.013 3.987 5 N -0.303 5.303 6 C -0.345 4.345 7 H 0.061 0.939 8 C -0.226 4.226 9 N -0.567 5.567 10 Si 0.767 3.233 11 H -0.222 1.222 12 H -0.225 1.225 13 H -0.201 1.201 14 C 0.065 3.935 15 C -0.157 4.157 16 C 0.001 3.999 17 N -0.339 5.339 18 C 0.300 3.700 19 O -0.455 6.455 20 C -0.088 4.088 21 C -0.064 4.064 22 N -0.233 5.233 23 C -0.216 4.216 24 C -0.172 4.172 25 N -0.161 5.161 26 H 0.275 0.725 27 C -0.010 4.010 28 C -0.169 4.169 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.084 0.916 38 H 0.051 0.949 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.100 0.900 42 H 0.158 0.842 43 H 0.164 0.836 44 H 0.195 0.805 45 H 0.233 0.767 46 H 0.111 0.889 47 H 0.133 0.867 48 H 0.061 0.939 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.730 6.793 -15.852 19.801 hybrid contribution -0.321 -2.195 0.535 2.282 sum -10.052 4.598 -15.317 18.889 Atomic orbital electron populations 1.22799 0.81734 1.02382 1.00087 1.88152 1.19429 1.28861 1.95184 1.23233 0.96503 0.83885 0.98491 1.20961 0.89896 0.96145 0.91662 1.43904 1.75618 1.02100 1.08727 1.18681 1.33214 0.83304 0.99303 0.93921 1.25499 0.97589 0.99755 0.99795 1.70069 1.36570 1.36113 1.13917 0.85766 0.77811 0.83602 0.76109 1.22234 1.22510 1.20069 1.20565 0.91445 0.93788 0.87716 1.22045 0.99320 0.98379 0.95917 1.21464 0.91317 0.99724 0.87397 1.48185 1.08779 1.68862 1.08076 1.20789 0.90048 0.75945 0.83200 1.90724 1.22115 1.52075 1.80626 1.20092 0.96139 1.07388 0.85192 1.22665 0.98966 0.87919 0.96890 1.70159 1.12936 1.32209 1.07986 1.22781 1.05021 0.96581 0.97222 1.23298 0.97336 1.02759 0.93812 1.43234 1.33775 1.21333 1.17747 0.72456 1.22134 0.79706 1.00821 0.98355 1.22295 0.99944 0.99200 0.95497 0.93457 0.90379 0.93827 0.93990 0.93515 0.92090 0.93012 0.94724 0.91617 0.94855 0.93612 0.91934 0.89953 0.84178 0.83595 0.80494 0.76742 0.88939 0.86673 0.93910 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.01 16 2 O -0.40 -16.05 10.18 -148.98 -1.52 -17.56 16 3 C 0.06 2.06 6.28 71.98 0.45 2.51 16 4 C 0.14 6.06 5.70 86.38 0.49 6.55 16 5 N -0.58 -26.21 2.34 -677.88 -1.59 -27.79 16 6 C -0.21 -11.14 7.60 84.03 0.64 -10.50 16 7 H 0.04 2.29 7.09 -2.91 -0.02 2.27 16 8 C -0.03 -1.68 4.97 84.86 0.42 -1.26 16 9 N -0.92 -53.61 11.47 21.65 0.25 -53.36 16 10 Si 0.94 46.08 29.60 68.60 2.03 48.11 16 11 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 12 H -0.30 -14.87 7.11 99.48 0.71 -14.17 16 13 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 14 C 0.17 6.12 2.59 45.02 0.12 6.23 16 15 C -0.12 -4.48 5.23 30.67 0.16 -4.32 16 16 C 0.12 3.95 6.43 86.36 0.56 4.51 16 17 N -0.61 -16.38 2.97 -818.08 -2.43 -18.81 16 18 C 0.51 15.01 7.69 87.66 0.67 15.69 16 19 O -0.58 -23.09 14.97 -3.02 -0.05 -23.13 16 20 C -0.05 -0.89 4.67 29.10 0.14 -0.76 16 21 C 0.20 4.82 6.96 138.13 0.96 5.78 16 22 N -0.51 -15.69 10.58 -188.12 -1.99 -17.68 16 23 C -0.07 -1.65 11.87 83.52 0.99 -0.66 16 24 C -0.04 -0.63 12.04 83.09 1.00 0.37 16 25 N -0.56 -9.44 6.15 -186.27 -1.15 -10.59 16 26 H 0.43 4.06 8.96 -92.71 -0.83 3.23 16 27 C 0.11 2.20 6.37 86.51 0.55 2.75 16 28 C -0.13 -3.67 5.39 30.82 0.17 -3.50 16 29 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.05 1.47 8.14 -2.39 -0.02 1.46 16 34 H 0.06 3.22 5.54 -2.39 -0.01 3.20 16 35 H 0.05 2.04 7.88 -2.39 -0.02 2.02 16 36 H 0.24 14.03 8.31 -92.71 -0.77 13.26 16 37 H 0.07 2.11 7.77 -2.39 -0.02 2.09 16 38 H 0.03 1.50 7.62 -2.39 -0.02 1.48 16 39 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.06 2.27 7.01 -2.39 -0.02 2.26 16 41 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.14 1.65 7.71 -2.39 -0.02 1.63 16 43 H 0.15 1.89 7.92 -2.39 -0.02 1.87 16 44 H 0.18 3.50 8.06 -2.91 -0.02 3.47 16 45 H 0.22 1.68 8.06 -2.91 -0.02 1.66 16 46 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.12 1.39 5.93 -2.39 -0.01 1.37 16 48 H 0.04 1.44 7.24 -2.39 -0.02 1.42 16 49 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -82.11 392.75 2.26 -79.85 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.12 Total: 15.55 kcal Atomic # 6 Polarization: 16.84 SS G_CDS: 8.56 Total: 25.41 kcal Atomic # 7 Polarization: -121.33 SS G_CDS: -6.90 Total: -128.23 kcal Atomic # 8 Polarization: -39.13 SS G_CDS: -1.56 Total: -40.70 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -82.11 2.26 -79.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716716250.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.609 kcal (2) G-P(sol) polarization free energy of solvation -82.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds