Wall clock time and date at job start Tue Mar 31 2020 19:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 113.99856 * 2 1 4 4 C 1.53002 * 109.46676 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47264 * 65.00188 * 4 3 2 6 6 C 1.36933 * 120.00321 * 269.99744 * 5 4 3 7 7 H 1.08002 * 120.00175 * 141.79941 * 6 5 4 8 8 C 1.38812 * 119.99946 * 321.80247 * 6 5 4 9 9 N 1.31620 * 119.99699 * 339.27289 * 8 6 5 10 10 Si 1.86794 * 120.00173 * 159.27400 * 8 6 5 11 11 H 1.48505 * 109.47003 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47212 * 119.99752 * 10 8 6 13 13 H 1.48499 * 109.47213 * 240.00082 * 10 8 6 14 14 C 1.46511 * 119.99686 * 89.99826 * 5 4 3 15 15 C 1.53041 * 109.45724 * 124.70467 * 14 5 4 16 16 C 1.53196 * 109.31007 * 181.38255 * 15 14 5 17 17 N 1.46923 * 108.77767 * 305.36782 * 16 15 14 18 18 C 1.34769 * 120.62790 * 233.58833 * 17 16 15 19 19 O 1.21278 * 120.00552 * 359.97438 * 18 17 16 20 20 C 1.50700 * 119.99807 * 179.97438 * 18 17 16 21 21 N 1.46505 * 109.47114 * 179.97438 * 20 18 17 22 22 C 1.36882 * 126.40207 * 269.99698 * 21 20 18 23 23 C 1.34666 * 106.81987 * 180.02562 * 22 21 20 24 24 N 1.34134 * 108.02015 * 0.02562 * 23 22 21 25 25 C 1.30496 * 109.25511 * 359.97438 * 24 23 22 26 26 C 1.46927 * 118.73671 * 53.85474 * 17 16 15 27 27 C 1.53038 * 109.45869 * 244.77274 * 14 5 4 28 28 H 1.08996 * 109.47114 * 299.99598 * 1 2 3 29 29 H 1.09009 * 109.47135 * 59.99801 * 1 2 3 30 30 H 1.09003 * 109.47345 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46460 * 60.00536 * 3 2 1 32 32 H 1.08994 * 109.47425 * 300.00010 * 3 2 1 33 33 H 1.08998 * 109.47074 * 305.00004 * 4 3 2 34 34 H 1.09001 * 109.46851 * 185.00726 * 4 3 2 35 35 H 0.97003 * 119.99569 * 179.97438 * 9 8 6 36 36 H 1.08996 * 109.46122 * 4.73060 * 14 5 4 37 37 H 1.08996 * 109.49698 * 61.43653 * 15 14 5 38 38 H 1.08996 * 109.52299 * 301.35175 * 15 14 5 39 39 H 1.08998 * 109.58677 * 185.57544 * 16 15 14 40 40 H 1.09001 * 109.69874 * 65.22451 * 16 15 14 41 41 H 1.09004 * 109.47401 * 60.00081 * 20 18 17 42 42 H 1.09003 * 109.47188 * 299.99460 * 20 18 17 43 43 H 1.08000 * 126.58851 * 359.97438 * 22 21 20 44 44 H 1.07996 * 125.98895 * 180.02562 * 23 22 21 45 45 H 1.07999 * 125.64776 * 180.26989 * 25 24 23 46 46 H 1.08998 * 109.58390 * 65.93671 * 26 17 16 47 47 H 1.09007 * 109.58588 * 186.35331 * 26 17 16 48 48 H 1.09003 * 109.49775 * 298.56883 * 27 14 5 49 49 H 1.08999 * 109.49917 * 58.66514 * 27 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.0967 -0.7969 -1.3369 7 1 3.8118 -1.3093 -2.2440 8 6 4.5855 -1.5184 -0.2565 9 7 5.3005 -0.9143 0.6688 10 14 4.2287 -3.3466 -0.1158 11 1 3.4098 -3.7817 -1.2757 12 1 5.5077 -4.1009 -0.1014 13 1 3.4842 -3.6103 1.1418 14 6 4.2863 1.4008 -2.4148 15 6 5.7072 1.0977 -2.8958 16 6 6.0410 1.9984 -4.0892 17 7 5.0059 1.8243 -5.1172 18 6 5.3419 1.5068 -6.3831 19 8 6.5082 1.3625 -6.6830 20 6 4.2685 1.3310 -7.4261 21 7 4.8864 0.9919 -8.7105 22 6 5.2967 1.8747 -9.6728 23 6 5.8035 1.1424 -10.6829 24 7 5.7050 -0.1524 -10.3468 25 6 5.1567 -0.2501 -9.1666 26 6 3.5978 2.0087 -4.7402 27 6 3.2910 1.1025 -3.5383 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8901 32 1 1.6886 1.8464 -0.8899 33 1 3.8514 0.5682 0.8409 34 1 3.9785 2.1765 0.0891 35 1 5.6418 -1.4185 1.4240 36 1 4.2140 2.4519 -2.1355 37 1 5.7735 0.0528 -3.1989 38 1 6.4136 1.2877 -2.0877 39 1 7.0122 1.7189 -4.4975 40 1 6.0656 3.0397 -3.7681 41 1 3.7054 2.2588 -7.5280 42 1 3.5955 0.5288 -7.1233 43 1 5.2265 2.9516 -9.6305 44 1 6.2170 1.5297 -11.6023 45 1 4.9565 -1.1715 -8.6399 46 1 3.4255 3.0504 -4.4695 47 1 2.9564 1.7360 -5.5784 48 1 3.3801 0.0575 -3.8353 49 1 2.2774 1.2964 -3.1875 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716717323.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:21 Heat of formation + Delta-G solvation = 20.533570 kcal Electronic energy + Delta-G solvation = -30244.782157 eV Core-core repulsion = 26209.626009 eV Total energy + Delta-G solvation = -4035.156148 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.12505 -40.04346 -37.79302 -36.94003 -35.06466 -34.11946 -32.15402 -31.03060 -30.59583 -29.53811 -28.49824 -27.59488 -25.73696 -24.86151 -23.36533 -22.87604 -21.48447 -21.38987 -20.80351 -20.06946 -19.05134 -17.72694 -17.37789 -16.36460 -15.87855 -15.74683 -15.42812 -15.12639 -14.87256 -14.70412 -14.39200 -14.09680 -14.00730 -13.92721 -13.68680 -13.54772 -13.42206 -13.27202 -13.08698 -12.60005 -12.27169 -12.18197 -11.82288 -11.65066 -11.44940 -10.97375 -10.89119 -10.84213 -10.70573 -10.52108 -10.38041 -10.14975 -10.04548 -9.94022 -9.86369 -9.54956 -9.45768 -8.90096 -8.58608 -8.54013 -8.42125 -6.56769 -5.75387 -3.32393 1.91327 2.42904 2.52602 3.07561 3.18997 3.40950 3.49308 3.51208 4.23227 4.39739 4.50311 4.61629 4.67454 4.69717 4.75701 4.91730 5.08202 5.32172 5.34741 5.36758 5.44032 5.53031 5.61606 5.67037 5.69782 5.74404 5.84480 5.95447 5.97222 6.02059 6.07134 6.14450 6.15403 6.27132 6.34859 6.49929 6.58303 6.64643 6.65766 6.68487 7.01024 7.05619 7.13796 7.35460 7.59654 7.85873 8.00589 8.02083 8.04402 8.55873 9.19909 9.83863 10.38659 11.26391 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014441 B = 0.002969 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.486168 B = 9429.134297 C = 9869.841715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.047 3.953 4 C 0.143 3.857 5 N -0.571 5.571 6 C -0.236 4.236 7 H 0.055 0.945 8 C 0.021 3.979 9 N -0.891 5.891 10 Si 0.895 3.105 11 H -0.278 1.278 12 H -0.294 1.294 13 H -0.289 1.289 14 C 0.177 3.823 15 C -0.130 4.130 16 C 0.112 3.888 17 N -0.599 5.599 18 C 0.495 3.505 19 O -0.529 6.529 20 C 0.087 3.913 21 N -0.444 5.444 22 C -0.048 4.048 23 C -0.032 4.032 24 N -0.497 5.497 25 C 0.195 3.805 26 C 0.105 3.895 27 C -0.142 4.142 28 H 0.026 0.974 29 H 0.028 0.972 30 H 0.074 0.926 31 H 0.023 0.977 32 H 0.026 0.974 33 H 0.103 0.897 34 H 0.039 0.961 35 H 0.252 0.748 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.119 0.881 42 H 0.124 0.876 43 H 0.171 0.829 44 H 0.168 0.832 45 H 0.203 0.797 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.560 9.946 -10.688 16.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C -0.032 4.032 4 C 0.017 3.983 5 N -0.290 5.290 6 C -0.366 4.366 7 H 0.072 0.928 8 C -0.179 4.179 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.222 1.222 13 H -0.216 1.216 14 C 0.069 3.931 15 C -0.170 4.170 16 C -0.010 4.010 17 N -0.332 5.332 18 C 0.280 3.720 19 O -0.406 6.406 20 C -0.040 4.040 21 N -0.127 5.127 22 C -0.181 4.181 23 C -0.179 4.179 24 N -0.215 5.215 25 C -0.087 4.087 26 C -0.018 4.018 27 C -0.182 4.182 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.041 0.959 32 H 0.044 0.956 33 H 0.120 0.880 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.080 0.920 41 H 0.137 0.863 42 H 0.142 0.858 43 H 0.188 0.812 44 H 0.185 0.815 45 H 0.219 0.781 46 H 0.087 0.913 47 H 0.091 0.909 48 H 0.088 0.912 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.528 9.008 -11.037 15.671 hybrid contribution -0.917 0.022 0.911 1.293 sum -7.446 9.029 -10.126 15.476 Atomic orbital electron populations 1.22630 0.84328 1.01464 0.98343 1.88229 1.16446 1.27657 1.94797 1.23447 0.98962 0.84087 0.96683 1.21039 0.87391 0.96579 0.93304 1.43725 1.75221 1.02702 1.07326 1.18701 1.35907 0.81460 1.00513 0.92769 1.25031 0.96331 0.97471 0.99072 1.69959 1.34523 1.35572 1.13370 0.86369 0.77354 0.85989 0.77766 1.20336 1.22173 1.21570 1.20317 0.91119 0.93527 0.88148 1.22254 0.99319 1.00025 0.95423 1.21812 0.91254 0.99724 0.88196 1.48158 1.08467 1.68262 1.08351 1.20584 0.90101 0.77900 0.83375 1.90770 1.19435 1.50397 1.79949 1.21771 0.95118 1.05354 0.81781 1.45054 1.46102 1.07705 1.13852 1.22637 1.07642 0.96631 0.91163 1.22229 1.05999 0.89226 1.00441 1.70287 1.18286 1.20430 1.12456 1.24982 1.01809 0.88682 0.93239 1.22007 0.80443 1.00588 0.98777 1.22508 1.00835 0.99787 0.95120 0.95561 0.95380 0.90764 0.95884 0.95590 0.87954 0.94288 0.93820 0.93543 0.90950 0.90662 0.89697 0.91974 0.86271 0.85772 0.81220 0.81500 0.78078 0.91259 0.90879 0.91163 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.35 -7.23 10.18 -35.23 -0.36 -7.58 16 3 C 0.05 0.87 6.28 37.16 0.23 1.11 16 4 C 0.14 3.04 5.70 -4.04 -0.02 3.02 16 5 N -0.57 -12.39 2.34 -165.61 -0.39 -12.78 16 6 C -0.24 -5.89 7.60 -15.06 -0.11 -6.01 16 7 H 0.05 1.40 7.09 -52.49 -0.37 1.02 16 8 C 0.02 0.55 4.97 -17.43 -0.09 0.46 16 9 N -0.89 -24.51 11.47 55.49 0.64 -23.87 16 10 Si 0.89 21.61 29.60 -169.99 -5.03 16.58 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 C 0.18 3.07 2.60 -67.88 -0.18 2.89 16 15 C -0.13 -2.30 5.23 -26.61 -0.14 -2.44 16 16 C 0.11 1.63 6.43 -3.71 -0.02 1.61 16 17 N -0.60 -7.60 2.97 -172.51 -0.51 -8.11 16 18 C 0.50 6.54 7.77 -10.99 -0.09 6.45 16 19 O -0.53 -9.38 15.84 5.56 0.09 -9.29 16 20 C 0.09 0.79 4.98 -5.19 -0.03 0.76 16 21 N -0.44 -5.12 2.24 -119.86 -0.27 -5.39 16 22 C -0.05 -0.54 11.58 -16.56 -0.19 -0.73 16 23 C -0.03 -0.40 11.87 -17.81 -0.21 -0.61 16 24 N -0.50 -7.28 11.25 -14.67 -0.17 -7.44 16 25 C 0.20 2.51 12.56 -90.37 -1.14 1.37 16 26 C 0.11 1.09 6.37 -3.49 -0.02 1.06 16 27 C -0.14 -2.05 5.39 -26.39 -0.14 -2.19 16 28 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.03 0.38 8.14 -51.92 -0.42 -0.04 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.10 2.58 5.54 -51.93 -0.29 2.29 16 34 H 0.04 0.76 7.88 -51.93 -0.41 0.35 16 35 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 36 H 0.05 0.76 7.77 -51.93 -0.40 0.35 16 37 H 0.07 1.49 7.62 -51.93 -0.40 1.09 16 38 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.08 1.36 7.01 -51.93 -0.36 1.00 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.12 0.72 7.93 -51.93 -0.41 0.31 16 42 H 0.12 0.87 7.70 -51.93 -0.40 0.47 16 43 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 44 H 0.17 1.63 8.06 -52.49 -0.42 1.21 16 45 H 0.20 2.05 8.06 -52.49 -0.42 1.63 16 46 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.07 0.53 5.93 -51.93 -0.31 0.22 16 48 H 0.07 1.17 7.24 -51.93 -0.38 0.80 16 49 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 395.01 15.07 5.95 5.95 Total: -1.00 -33.50 395.01 -9.01 -42.51 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -7.94 Total: 1.10 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -1.03 Total: 8.31 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: -0.70 Total: -57.59 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.27 Total: -16.87 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.50 -9.01 -42.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716717323.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.045 kcal (2) G-P(sol) polarization free energy of solvation -33.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds