Wall clock time and date at job start Tue Mar 31 2020 19:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 113.99856 * 2 1 4 4 C 1.53002 * 109.46676 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47264 * 65.00188 * 4 3 2 6 6 C 1.36933 * 120.00321 * 269.99744 * 5 4 3 7 7 H 1.08002 * 120.00175 * 141.79941 * 6 5 4 8 8 C 1.38812 * 119.99946 * 321.80247 * 6 5 4 9 9 N 1.31620 * 119.99699 * 339.27289 * 8 6 5 10 10 Si 1.86794 * 120.00173 * 159.27400 * 8 6 5 11 11 H 1.48505 * 109.47003 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47212 * 119.99752 * 10 8 6 13 13 H 1.48499 * 109.47213 * 240.00082 * 10 8 6 14 14 C 1.46511 * 119.99686 * 89.99826 * 5 4 3 15 15 C 1.53041 * 109.45724 * 124.70467 * 14 5 4 16 16 C 1.53196 * 109.31007 * 181.38255 * 15 14 5 17 17 N 1.46923 * 108.77767 * 305.36782 * 16 15 14 18 18 C 1.34769 * 120.62790 * 233.58833 * 17 16 15 19 19 O 1.21278 * 120.00552 * 359.97438 * 18 17 16 20 20 C 1.50700 * 119.99807 * 179.97438 * 18 17 16 21 21 N 1.46505 * 109.47114 * 179.97438 * 20 18 17 22 22 C 1.36882 * 126.40207 * 269.99698 * 21 20 18 23 23 C 1.34666 * 106.81987 * 180.02562 * 22 21 20 24 24 N 1.34134 * 108.02015 * 0.02562 * 23 22 21 25 25 C 1.30496 * 109.25511 * 359.97438 * 24 23 22 26 26 C 1.46927 * 118.73671 * 53.85474 * 17 16 15 27 27 C 1.53038 * 109.45869 * 244.77274 * 14 5 4 28 28 H 1.08996 * 109.47114 * 299.99598 * 1 2 3 29 29 H 1.09009 * 109.47135 * 59.99801 * 1 2 3 30 30 H 1.09003 * 109.47345 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46460 * 60.00536 * 3 2 1 32 32 H 1.08994 * 109.47425 * 300.00010 * 3 2 1 33 33 H 1.08998 * 109.47074 * 305.00004 * 4 3 2 34 34 H 1.09001 * 109.46851 * 185.00726 * 4 3 2 35 35 H 0.97003 * 119.99569 * 179.97438 * 9 8 6 36 36 H 1.08996 * 109.46122 * 4.73060 * 14 5 4 37 37 H 1.08996 * 109.49698 * 61.43653 * 15 14 5 38 38 H 1.08996 * 109.52299 * 301.35175 * 15 14 5 39 39 H 1.08998 * 109.58677 * 185.57544 * 16 15 14 40 40 H 1.09001 * 109.69874 * 65.22451 * 16 15 14 41 41 H 1.09004 * 109.47401 * 60.00081 * 20 18 17 42 42 H 1.09003 * 109.47188 * 299.99460 * 20 18 17 43 43 H 1.08000 * 126.58851 * 359.97438 * 22 21 20 44 44 H 1.07996 * 125.98895 * 180.02562 * 23 22 21 45 45 H 1.07999 * 125.64776 * 180.26989 * 25 24 23 46 46 H 1.08998 * 109.58390 * 65.93671 * 26 17 16 47 47 H 1.09007 * 109.58588 * 186.35331 * 26 17 16 48 48 H 1.09003 * 109.49775 * 298.56883 * 27 14 5 49 49 H 1.08999 * 109.49917 * 58.66514 * 27 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.0967 -0.7969 -1.3369 7 1 3.8118 -1.3093 -2.2440 8 6 4.5855 -1.5184 -0.2565 9 7 5.3005 -0.9143 0.6688 10 14 4.2287 -3.3466 -0.1158 11 1 3.4098 -3.7817 -1.2757 12 1 5.5077 -4.1009 -0.1014 13 1 3.4842 -3.6103 1.1418 14 6 4.2863 1.4008 -2.4148 15 6 5.7072 1.0977 -2.8958 16 6 6.0410 1.9984 -4.0892 17 7 5.0059 1.8243 -5.1172 18 6 5.3419 1.5068 -6.3831 19 8 6.5082 1.3625 -6.6830 20 6 4.2685 1.3310 -7.4261 21 7 4.8864 0.9919 -8.7105 22 6 5.2967 1.8747 -9.6728 23 6 5.8035 1.1424 -10.6829 24 7 5.7050 -0.1524 -10.3468 25 6 5.1567 -0.2501 -9.1666 26 6 3.5978 2.0087 -4.7402 27 6 3.2910 1.1025 -3.5383 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8901 32 1 1.6886 1.8464 -0.8899 33 1 3.8514 0.5682 0.8409 34 1 3.9785 2.1765 0.0891 35 1 5.6418 -1.4185 1.4240 36 1 4.2140 2.4519 -2.1355 37 1 5.7735 0.0528 -3.1989 38 1 6.4136 1.2877 -2.0877 39 1 7.0122 1.7189 -4.4975 40 1 6.0656 3.0397 -3.7681 41 1 3.7054 2.2588 -7.5280 42 1 3.5955 0.5288 -7.1233 43 1 5.2265 2.9516 -9.6305 44 1 6.2170 1.5297 -11.6023 45 1 4.9565 -1.1715 -8.6399 46 1 3.4255 3.0504 -4.4695 47 1 2.9564 1.7360 -5.5784 48 1 3.3801 0.0575 -3.8353 49 1 2.2774 1.2964 -3.1875 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716717323.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:20 Heat of formation + Delta-G solvation = -0.014610 kcal Electronic energy + Delta-G solvation = -30245.673193 eV Core-core repulsion = 26209.626009 eV Total energy + Delta-G solvation = -4036.047184 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.98777 -41.11725 -39.17915 -38.27245 -36.53996 -35.01427 -33.75836 -32.45281 -31.90093 -30.41121 -29.87385 -28.66190 -27.11765 -26.31754 -24.75044 -24.06523 -22.61497 -22.26360 -22.09376 -21.42675 -20.19609 -18.71967 -18.36626 -17.95837 -17.28507 -16.81540 -16.63598 -16.51332 -16.43492 -15.72801 -15.60996 -15.44387 -15.26480 -15.17038 -14.83790 -14.77802 -14.58043 -14.25262 -14.03052 -13.77614 -13.40461 -13.33552 -13.24185 -13.10240 -12.89337 -12.74479 -12.54934 -12.30339 -12.20202 -12.06355 -11.79086 -11.57757 -11.45072 -11.35683 -11.06025 -10.96980 -10.45714 -10.36521 -10.26175 -9.67289 -9.40511 -8.40961 -7.70029 -5.28588 1.03519 1.43777 1.46233 1.48839 1.54712 1.72842 2.15958 2.26646 2.58081 3.26340 3.35918 3.42425 3.63512 3.79965 3.88394 3.95217 4.04519 4.11942 4.18715 4.26080 4.38164 4.47115 4.49168 4.57491 4.59809 4.66799 4.68359 4.75235 4.78142 4.82395 4.84558 4.87609 4.92600 4.95408 5.04031 5.14508 5.24827 5.30813 5.46392 5.64734 5.68791 5.78768 5.84968 5.90013 6.18768 6.39517 6.54744 6.73403 7.04158 7.14957 7.32111 8.02006 8.50084 9.25803 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014441 B = 0.002969 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.486168 B = 9429.134297 C = 9869.841715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.057 3.943 4 C 0.139 3.861 5 N -0.584 5.584 6 C -0.213 4.213 7 H 0.044 0.956 8 C -0.030 4.030 9 N -0.920 5.920 10 Si 0.935 3.065 11 H -0.272 1.272 12 H -0.302 1.302 13 H -0.297 1.297 14 C 0.171 3.829 15 C -0.119 4.119 16 C 0.124 3.876 17 N -0.598 5.598 18 C 0.493 3.507 19 O -0.583 6.583 20 C 0.091 3.909 21 N -0.446 5.446 22 C -0.041 4.041 23 C -0.060 4.060 24 N -0.537 5.537 25 C 0.178 3.822 26 C 0.111 3.889 27 C -0.132 4.132 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.077 0.923 31 H 0.041 0.959 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.243 0.757 36 H 0.068 0.932 37 H 0.033 0.967 38 H 0.045 0.955 39 H 0.063 0.937 40 H 0.087 0.913 41 H 0.165 0.835 42 H 0.151 0.849 43 H 0.203 0.797 44 H 0.183 0.817 45 H 0.217 0.783 46 H 0.099 0.901 47 H 0.117 0.883 48 H 0.042 0.958 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.525 12.495 -12.289 20.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C -0.021 4.021 4 C 0.013 3.987 5 N -0.304 5.304 6 C -0.344 4.344 7 H 0.062 0.938 8 C -0.226 4.226 9 N -0.566 5.566 10 Si 0.766 3.234 11 H -0.197 1.197 12 H -0.230 1.230 13 H -0.224 1.224 14 C 0.065 3.935 15 C -0.159 4.159 16 C 0.001 3.999 17 N -0.331 5.331 18 C 0.280 3.720 19 O -0.463 6.463 20 C -0.034 4.034 21 N -0.128 5.128 22 C -0.174 4.174 23 C -0.207 4.207 24 N -0.256 5.256 25 C -0.105 4.105 26 C -0.011 4.011 27 C -0.172 4.172 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.086 0.914 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.105 0.895 41 H 0.182 0.818 42 H 0.169 0.831 43 H 0.220 0.780 44 H 0.200 0.800 45 H 0.233 0.767 46 H 0.117 0.883 47 H 0.135 0.865 48 H 0.061 0.939 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.550 11.576 -12.654 19.630 hybrid contribution -0.007 -0.723 1.405 1.581 sum -9.557 10.852 -11.249 18.320 Atomic orbital electron populations 1.22799 0.81715 1.02400 1.00094 1.88152 1.19440 1.28910 1.95188 1.23237 0.96494 0.83874 0.98523 1.20960 0.89899 0.96177 0.91656 1.43906 1.75639 1.02084 1.08734 1.18715 1.33034 0.83321 0.99296 0.93848 1.25479 0.97614 0.99630 0.99851 1.70067 1.36579 1.36012 1.13933 0.85720 0.76646 0.83735 0.77318 1.19701 1.23016 1.22411 1.20574 0.91405 0.93859 0.87690 1.22062 0.99371 0.98437 0.95998 1.21512 0.91150 0.99980 0.87276 1.48218 1.09095 1.67817 1.07920 1.21338 0.90346 0.76348 0.83937 1.90760 1.22050 1.52594 1.80868 1.22058 0.93591 1.08560 0.79221 1.45210 1.45831 1.07245 1.14539 1.23166 1.05939 0.97945 0.90342 1.22672 1.07122 0.88936 1.01942 1.70229 1.19508 1.21986 1.13853 1.25330 1.01980 0.89954 0.93226 1.22202 0.79257 1.01212 0.98439 1.22313 1.00074 0.99259 0.95565 0.93884 0.93375 0.90394 0.94044 0.93394 0.92193 0.92903 0.94741 0.91420 0.94859 0.93587 0.91836 0.89454 0.81777 0.83107 0.78039 0.80024 0.76677 0.88262 0.86496 0.93931 0.90484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 11.01 113.37 1.25 1.99 16 2 O -0.40 -15.69 10.18 -148.98 -1.52 -17.20 16 3 C 0.06 1.98 6.28 71.98 0.45 2.43 16 4 C 0.14 5.85 5.70 86.38 0.49 6.34 16 5 N -0.58 -25.22 2.34 -677.88 -1.59 -26.80 16 6 C -0.21 -10.80 7.60 84.03 0.64 -10.16 16 7 H 0.04 2.28 7.09 -2.91 -0.02 2.26 16 8 C -0.03 -1.61 4.97 84.86 0.42 -1.19 16 9 N -0.92 -52.76 11.47 21.65 0.25 -52.51 16 10 Si 0.93 45.70 29.60 68.60 2.03 47.73 16 11 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 13 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 14 C 0.17 5.67 2.60 45.02 0.12 5.79 16 15 C -0.12 -4.24 5.23 30.67 0.16 -4.08 16 16 C 0.12 3.45 6.43 86.36 0.56 4.00 16 17 N -0.60 -13.24 2.97 -818.08 -2.43 -15.67 16 18 C 0.49 11.58 7.77 87.66 0.68 12.26 16 19 O -0.58 -20.13 15.84 -3.02 -0.05 -20.18 16 20 C 0.09 1.22 4.98 85.63 0.43 1.65 16 21 N -0.45 -8.98 2.24 -533.13 -1.19 -10.18 16 22 C -0.04 -0.81 11.58 83.09 0.96 0.16 16 23 C -0.06 -1.44 11.87 83.52 0.99 -0.45 16 24 N -0.54 -15.53 11.25 -200.31 -2.25 -17.78 16 25 C 0.18 4.35 12.56 180.26 2.26 6.61 16 26 C 0.11 1.69 6.37 86.50 0.55 2.24 16 27 C -0.13 -3.38 5.39 30.81 0.17 -3.21 16 28 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.06 3.10 5.54 -2.39 -0.01 3.09 16 34 H 0.05 2.00 7.88 -2.39 -0.02 1.98 16 35 H 0.24 13.82 8.31 -92.71 -0.77 13.05 16 36 H 0.07 1.98 7.77 -2.39 -0.02 1.96 16 37 H 0.03 1.42 7.62 -2.39 -0.02 1.40 16 38 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.06 2.06 7.01 -2.39 -0.02 2.05 16 40 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.16 0.80 7.93 -2.38 -0.02 0.78 16 42 H 0.15 1.30 7.70 -2.39 -0.02 1.28 16 43 H 0.20 2.43 8.06 -2.91 -0.02 2.41 16 44 H 0.18 3.40 8.06 -2.91 -0.02 3.38 16 45 H 0.22 4.21 8.06 -2.91 -0.02 4.19 16 46 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.12 0.86 5.93 -2.38 -0.01 0.84 16 48 H 0.04 1.33 7.24 -2.39 -0.02 1.32 16 49 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -79.35 395.01 4.31 -75.04 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.93 Total: 13.17 kcal Atomic # 6 Polarization: 14.26 SS G_CDS: 10.13 Total: 24.39 kcal Atomic # 7 Polarization: -115.73 SS G_CDS: -7.21 Total: -122.94 kcal Atomic # 8 Polarization: -35.82 SS G_CDS: -1.56 Total: -37.38 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -79.35 4.31 -75.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716717323.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.023 kcal (2) G-P(sol) polarization free energy of solvation -79.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds