Wall clock time and date at job start Tue Mar 31 2020 19:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99799 * 2 1 4 4 C 1.53000 * 109.46898 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47070 * 179.97438 * 4 3 2 6 6 C 1.34263 * 125.75696 * 125.30572 * 5 4 3 7 7 C 1.38043 * 107.41713 * 180.11099 * 6 5 4 8 8 C 1.47421 * 126.41584 * 179.87344 * 7 6 5 9 9 O 1.21604 * 119.99852 * 359.70997 * 8 7 6 10 10 N 1.34775 * 120.00404 * 179.71314 * 8 7 6 11 11 C 1.47029 * 125.64566 * 0.03702 * 10 8 7 12 12 C 1.54364 * 107.28613 * 181.05822 * 11 10 8 13 13 C 1.55159 * 102.92491 * 22.13842 * 12 11 10 14 14 H 1.09008 * 111.00115 * 82.63854 * 13 12 11 15 15 C 1.52992 * 111.00782 * 206.45019 * 13 12 11 16 16 C 1.53004 * 109.47319 * 181.82000 * 15 13 12 17 17 N 1.46499 * 109.47198 * 180.02562 * 16 15 13 18 18 C 1.36931 * 120.00122 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00098 * 0.02562 * 18 17 16 20 20 C 1.38812 * 120.00429 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99535 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00187 * 180.27849 * 20 18 17 23 23 H 1.48497 * 109.47173 * 179.72427 * 22 20 18 24 24 H 1.48506 * 109.46866 * 299.71963 * 22 20 18 25 25 H 1.48501 * 109.47438 * 59.72083 * 22 20 18 26 26 C 1.47420 * 125.65429 * 179.97438 * 10 8 7 27 27 C 1.41288 * 107.16931 * 359.60886 * 7 6 5 28 28 N 1.30451 * 108.02738 * 0.23968 * 27 7 6 29 29 H 1.09006 * 109.47081 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47602 * 300.00368 * 1 2 3 31 31 H 1.09001 * 109.46439 * 60.00944 * 1 2 3 32 32 H 1.08999 * 109.46863 * 59.99736 * 3 2 1 33 33 H 1.08998 * 109.46907 * 299.99462 * 3 2 1 34 34 H 1.08996 * 109.47499 * 59.99581 * 4 3 2 35 35 H 1.09005 * 109.46785 * 299.99489 * 4 3 2 36 36 H 1.07997 * 126.29165 * 359.95688 * 6 5 4 37 37 H 1.08999 * 109.88437 * 300.44503 * 11 10 8 38 38 H 1.08999 * 109.87636 * 61.45434 * 11 10 8 39 39 H 1.08999 * 110.71092 * 263.79517 * 12 11 10 40 40 H 1.09002 * 110.75594 * 140.50767 * 12 11 10 41 41 H 1.09000 * 109.47364 * 61.82019 * 15 13 12 42 42 H 1.08998 * 109.47610 * 301.82082 * 15 13 12 43 43 H 1.08995 * 109.46638 * 60.00097 * 16 15 13 44 44 H 1.08998 * 109.46846 * 300.00550 * 16 15 13 45 45 H 0.97001 * 119.99790 * 359.97438 * 17 16 15 46 46 H 0.97005 * 119.99717 * 180.02562 * 21 20 18 47 47 H 1.09003 * 110.36391 * 37.06293 * 26 10 8 48 48 H 1.09004 * 110.46134 * 274.79558 * 26 10 8 49 49 H 1.08005 * 125.99049 * 180.24080 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0253 2.9842 0.8892 7 6 5.3272 4.2840 0.5355 8 6 6.2631 5.1855 1.2316 9 8 6.8522 4.8020 2.2239 10 7 6.4659 6.4348 0.7683 11 6 5.8221 7.0251 -0.4144 12 6 6.3772 8.4568 -0.5722 13 6 7.7219 8.3946 0.1993 14 1 8.5116 7.9768 -0.4252 15 6 8.1164 9.7758 0.7260 16 6 9.4664 9.6829 1.4400 17 7 9.8438 11.0053 1.9449 18 6 11.0223 11.1687 2.6229 19 1 11.6737 10.3226 2.7851 20 6 11.3797 12.4216 3.1018 21 7 10.5860 13.4527 2.9037 22 14 12.9909 12.6458 4.0199 23 1 13.1400 14.0687 4.4178 24 1 12.9925 11.7898 5.2333 25 1 14.1212 12.2572 3.1385 26 6 7.3689 7.4362 1.3642 27 6 4.5758 4.5864 -0.6221 28 7 3.8695 3.5341 -0.9313 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3632 0.5137 -0.8901 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8575 0.6436 -0.8890 35 1 3.8567 0.6440 0.8910 36 1 5.4316 2.4394 1.7285 37 1 6.0612 6.4357 -1.2996 38 1 4.7420 7.0570 -0.2712 39 1 5.7045 9.1834 -0.1166 40 1 6.5460 8.6920 -1.6231 41 1 7.3586 10.1278 1.4260 42 1 8.1935 10.4741 -0.1073 43 1 10.2241 9.3310 0.7400 44 1 9.3894 8.9845 2.2733 45 1 9.2593 11.7654 1.7983 46 1 10.8359 14.3284 3.2380 47 1 8.2695 6.9553 1.7460 48 1 6.8623 7.9791 2.1622 49 1 4.5846 5.5245 -1.1574 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717106906.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:01 Heat of formation + Delta-G solvation = 15.982494 kcal Electronic energy + Delta-G solvation = -27886.248942 eV Core-core repulsion = 23850.895444 eV Total energy + Delta-G solvation = -4035.353498 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.82573 -39.83563 -38.57647 -37.63125 -35.15451 -34.43912 -32.92477 -31.08062 -30.79217 -29.94915 -29.40138 -27.35274 -26.63956 -24.72773 -24.07493 -23.28649 -22.06656 -21.40562 -20.94917 -20.09662 -19.65792 -17.90326 -17.06559 -17.02867 -16.93825 -16.25827 -16.13553 -15.97394 -15.41920 -15.20634 -14.67149 -14.53480 -14.40997 -14.03635 -13.80958 -13.56795 -13.40934 -13.23203 -13.02619 -12.82099 -12.66327 -12.55250 -12.28599 -12.03598 -11.98605 -11.64324 -11.37412 -11.26733 -11.03414 -10.78438 -10.61995 -10.43801 -10.38365 -10.31085 -10.02956 -9.97797 -9.92396 -9.62481 -9.11663 -8.81433 -8.63960 -6.86828 -5.71805 -3.00052 1.16307 1.71814 1.85340 2.93205 3.12776 3.31130 3.48388 3.52253 3.53618 3.95904 4.23340 4.31010 4.38201 4.45380 4.54484 4.58839 4.63968 4.70527 4.73534 4.78510 4.83006 4.92481 5.00964 5.07729 5.09087 5.14614 5.20450 5.36923 5.42692 5.57368 5.62436 5.71081 5.84185 5.86248 5.97086 5.98072 6.12924 6.23865 6.29768 6.30365 6.41739 6.42544 6.44615 6.89746 6.93666 7.11568 7.48316 7.74904 8.17052 8.47591 9.58458 10.17087 10.51571 11.51198 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.033325 B = 0.001586 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.001143 B =17646.674954 C =18150.222205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.051 3.949 4 C 0.134 3.866 5 N -0.362 5.362 6 C 0.132 3.868 7 C -0.285 4.285 8 C 0.607 3.393 9 O -0.548 6.548 10 N -0.613 5.613 11 C 0.094 3.906 12 C -0.130 4.130 13 C -0.094 4.094 14 H 0.085 0.915 15 C -0.114 4.114 16 C 0.151 3.849 17 N -0.734 5.734 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.935 5.935 22 Si 0.907 3.093 23 H -0.291 1.291 24 H -0.286 1.286 25 H -0.286 1.286 26 C 0.112 3.888 27 C 0.072 3.928 28 N -0.299 5.299 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.190 0.810 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.018 0.982 44 H 0.020 0.980 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.082 0.918 48 H 0.073 0.927 49 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.948 -25.379 -10.795 35.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.027 4.027 4 C 0.012 3.988 5 N -0.142 5.142 6 C -0.018 4.018 7 C -0.300 4.300 8 C 0.397 3.603 9 O -0.427 6.427 10 N -0.347 5.347 11 C -0.029 4.029 12 C -0.168 4.168 13 C -0.114 4.114 14 H 0.104 0.896 15 C -0.153 4.153 16 C 0.023 3.977 17 N -0.378 5.378 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.584 5.584 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.213 1.213 25 H -0.213 1.213 26 C -0.009 4.009 27 C -0.116 4.116 28 N -0.118 5.118 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.118 0.882 35 H 0.128 0.872 36 H 0.207 0.793 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.035 0.965 44 H 0.038 0.962 45 H 0.217 0.783 46 H 0.065 0.935 47 H 0.100 0.900 48 H 0.091 0.909 49 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -22.315 -26.522 -10.979 36.358 hybrid contribution 1.019 1.028 0.995 1.757 sum -21.296 -25.493 -9.984 34.686 Atomic orbital electron populations 1.22795 0.79784 1.03220 1.00460 1.87781 1.20711 1.26791 1.95621 1.22642 0.92376 0.85472 1.02177 1.21507 0.92824 0.78593 1.05827 1.48341 1.32794 1.12129 1.20971 1.22997 0.90536 0.94208 0.94101 1.20223 1.10272 0.96186 1.03302 1.16818 0.80746 0.79669 0.83051 1.90798 1.50456 1.75042 1.26393 1.48236 1.44850 1.12401 1.29196 1.22369 0.97281 0.94891 0.88366 1.22765 0.97280 0.95023 1.01695 1.22350 0.96764 0.96268 0.96022 0.89630 1.21680 0.98833 0.94297 1.00446 1.20688 0.92444 0.89405 0.95159 1.42354 1.23631 1.04922 1.66908 1.19211 0.96666 0.94020 1.27100 0.91245 1.24731 0.98756 0.95755 1.01805 1.69655 1.37657 0.99632 1.51464 0.86264 0.83495 0.76664 0.79765 1.21700 1.21264 1.21288 1.22400 0.93828 0.88718 0.95993 1.24816 0.93442 0.98161 0.95152 1.77185 1.24471 0.96871 1.13283 0.89078 0.93728 0.93635 0.92520 0.91414 0.88240 0.87203 0.79268 0.91084 0.91124 0.90104 0.89778 0.91575 0.91304 0.96454 0.96236 0.78344 0.93536 0.89961 0.90925 0.78264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.39 -2.52 10.70 -35.23 -0.38 -2.90 16 3 C 0.05 0.30 6.11 37.16 0.23 0.52 16 4 C 0.13 0.72 6.86 -4.04 -0.03 0.69 16 5 N -0.36 -2.94 3.65 -60.81 -0.22 -3.16 16 6 C 0.13 1.18 11.25 -16.56 -0.19 1.00 16 7 C -0.29 -3.08 6.09 -105.07 -0.64 -3.72 16 8 C 0.61 8.26 7.85 -12.52 -0.10 8.16 16 9 O -0.55 -9.44 17.15 5.27 0.09 -9.34 16 10 N -0.61 -7.40 3.33 -171.75 -0.57 -7.97 16 11 C 0.09 0.79 4.99 -3.04 -0.02 0.77 16 12 C -0.13 -1.14 6.42 -24.87 -0.16 -1.30 16 13 C -0.09 -1.13 3.04 -88.47 -0.27 -1.39 16 14 H 0.09 1.02 8.14 -51.92 -0.42 0.60 16 15 C -0.11 -1.73 4.84 -26.73 -0.13 -1.86 16 16 C 0.15 3.03 6.14 -4.04 -0.02 3.00 16 17 N -0.73 -18.93 5.60 -59.91 -0.34 -19.27 16 18 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 19 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 20 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 21 N -0.94 -28.64 13.06 55.49 0.72 -27.91 16 22 Si 0.91 22.81 29.55 -169.99 -5.02 17.78 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 C 0.11 1.50 5.71 -2.52 -0.01 1.49 16 27 C 0.07 0.65 10.44 -16.98 -0.18 0.48 16 28 N -0.30 -2.87 12.33 30.86 0.38 -2.49 16 29 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.11 0.37 8.06 -51.93 -0.42 -0.05 16 36 H 0.19 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.07 0.49 6.83 -51.93 -0.35 0.14 16 38 H 0.07 0.49 6.99 -51.93 -0.36 0.12 16 39 H 0.08 0.70 8.04 -51.93 -0.42 0.28 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 1.02 8.03 -51.93 -0.42 0.60 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.02 0.40 7.59 -51.93 -0.39 0.01 16 45 H 0.38 10.28 7.67 -40.82 -0.31 9.96 16 46 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 47 H 0.08 1.24 8.00 -51.93 -0.42 0.83 16 48 H 0.07 1.01 7.96 -51.93 -0.41 0.60 16 49 H 0.20 1.32 4.47 -52.48 -0.23 1.09 16 LS Contribution 402.19 15.07 6.06 6.06 Total: -1.00 -36.26 402.19 -7.86 -44.12 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -7.94 Total: 3.52 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -0.65 Total: 1.56 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -0.02 Total: -60.81 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -0.29 Total: -12.24 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.26 -7.86 -44.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717106906.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.102 kcal (2) G-P(sol) polarization free energy of solvation -36.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds