Wall clock time and date at job start Tue Mar 31 2020 19:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99799 * 2 1 4 4 C 1.53000 * 109.46898 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47070 * 179.97438 * 4 3 2 6 6 C 1.34263 * 125.75696 * 125.30572 * 5 4 3 7 7 C 1.38043 * 107.41713 * 180.11099 * 6 5 4 8 8 C 1.47421 * 126.41584 * 179.87344 * 7 6 5 9 9 O 1.21604 * 119.99852 * 359.70997 * 8 7 6 10 10 N 1.34775 * 120.00404 * 179.71314 * 8 7 6 11 11 C 1.47029 * 125.64566 * 0.03702 * 10 8 7 12 12 C 1.54364 * 107.28613 * 181.05822 * 11 10 8 13 13 C 1.55159 * 102.92491 * 22.13842 * 12 11 10 14 14 H 1.09008 * 111.00115 * 82.63854 * 13 12 11 15 15 C 1.52992 * 111.00782 * 206.45019 * 13 12 11 16 16 C 1.53004 * 109.47319 * 181.82000 * 15 13 12 17 17 N 1.46499 * 109.47198 * 180.02562 * 16 15 13 18 18 C 1.36931 * 120.00122 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00098 * 0.02562 * 18 17 16 20 20 C 1.38812 * 120.00429 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99535 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00187 * 180.27849 * 20 18 17 23 23 H 1.48497 * 109.47173 * 179.72427 * 22 20 18 24 24 H 1.48506 * 109.46866 * 299.71963 * 22 20 18 25 25 H 1.48501 * 109.47438 * 59.72083 * 22 20 18 26 26 C 1.47420 * 125.65429 * 179.97438 * 10 8 7 27 27 C 1.41288 * 107.16931 * 359.60886 * 7 6 5 28 28 N 1.30451 * 108.02738 * 0.23968 * 27 7 6 29 29 H 1.09006 * 109.47081 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47602 * 300.00368 * 1 2 3 31 31 H 1.09001 * 109.46439 * 60.00944 * 1 2 3 32 32 H 1.08999 * 109.46863 * 59.99736 * 3 2 1 33 33 H 1.08998 * 109.46907 * 299.99462 * 3 2 1 34 34 H 1.08996 * 109.47499 * 59.99581 * 4 3 2 35 35 H 1.09005 * 109.46785 * 299.99489 * 4 3 2 36 36 H 1.07997 * 126.29165 * 359.95688 * 6 5 4 37 37 H 1.08999 * 109.88437 * 300.44503 * 11 10 8 38 38 H 1.08999 * 109.87636 * 61.45434 * 11 10 8 39 39 H 1.08999 * 110.71092 * 263.79517 * 12 11 10 40 40 H 1.09002 * 110.75594 * 140.50767 * 12 11 10 41 41 H 1.09000 * 109.47364 * 61.82019 * 15 13 12 42 42 H 1.08998 * 109.47610 * 301.82082 * 15 13 12 43 43 H 1.08995 * 109.46638 * 60.00097 * 16 15 13 44 44 H 1.08998 * 109.46846 * 300.00550 * 16 15 13 45 45 H 0.97001 * 119.99790 * 359.97438 * 17 16 15 46 46 H 0.97005 * 119.99717 * 180.02562 * 21 20 18 47 47 H 1.09003 * 110.36391 * 37.06293 * 26 10 8 48 48 H 1.09004 * 110.46134 * 274.79558 * 26 10 8 49 49 H 1.08005 * 125.99049 * 180.24080 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0253 2.9842 0.8892 7 6 5.3272 4.2840 0.5355 8 6 6.2631 5.1855 1.2316 9 8 6.8522 4.8020 2.2239 10 7 6.4659 6.4348 0.7683 11 6 5.8221 7.0251 -0.4144 12 6 6.3772 8.4568 -0.5722 13 6 7.7219 8.3946 0.1993 14 1 8.5116 7.9768 -0.4252 15 6 8.1164 9.7758 0.7260 16 6 9.4664 9.6829 1.4400 17 7 9.8438 11.0053 1.9449 18 6 11.0223 11.1687 2.6229 19 1 11.6737 10.3226 2.7851 20 6 11.3797 12.4216 3.1018 21 7 10.5860 13.4527 2.9037 22 14 12.9909 12.6458 4.0199 23 1 13.1400 14.0687 4.4178 24 1 12.9925 11.7898 5.2333 25 1 14.1212 12.2572 3.1385 26 6 7.3689 7.4362 1.3642 27 6 4.5758 4.5864 -0.6221 28 7 3.8695 3.5341 -0.9313 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3632 0.5137 -0.8901 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8575 0.6436 -0.8890 35 1 3.8567 0.6440 0.8910 36 1 5.4316 2.4394 1.7285 37 1 6.0612 6.4357 -1.2996 38 1 4.7420 7.0570 -0.2712 39 1 5.7045 9.1834 -0.1166 40 1 6.5460 8.6920 -1.6231 41 1 7.3586 10.1278 1.4260 42 1 8.1935 10.4741 -0.1073 43 1 10.2241 9.3310 0.7400 44 1 9.3894 8.9845 2.2733 45 1 9.2593 11.7654 1.7983 46 1 10.8359 14.3284 3.2380 47 1 8.2695 6.9553 1.7460 48 1 6.8623 7.9791 2.1622 49 1 4.5846 5.5245 -1.1574 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717106906.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:00 Heat of formation + Delta-G solvation = -9.574781 kcal Electronic energy + Delta-G solvation = -27887.357188 eV Core-core repulsion = 23850.895444 eV Total energy + Delta-G solvation = -4036.461744 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.52703 -40.76996 -39.02013 -38.69926 -36.83057 -35.12901 -34.39879 -32.68476 -31.52248 -30.74356 -30.43271 -28.48200 -27.22317 -26.07157 -24.85217 -24.54791 -23.07648 -22.55573 -21.71265 -21.17479 -20.50379 -19.13246 -18.57848 -17.67776 -17.41589 -17.22653 -16.87622 -16.64217 -16.54772 -16.22940 -15.92546 -15.49691 -15.31132 -15.23118 -14.99833 -14.83935 -14.37253 -14.30178 -14.18473 -13.80599 -13.61086 -13.24577 -13.08696 -12.95280 -12.82719 -12.77037 -12.72897 -12.36869 -12.27649 -12.19531 -12.03601 -11.95174 -11.64968 -11.50997 -11.36128 -10.97018 -10.90462 -10.79755 -10.67635 -9.92717 -9.54021 -8.98929 -7.94929 -5.23584 0.43330 1.10012 1.15623 1.47318 1.50555 1.56741 2.02929 2.39136 2.56756 2.71280 3.36056 3.38544 3.57673 3.66179 3.75824 3.83232 3.84115 3.88344 3.98657 4.17372 4.20457 4.26688 4.32351 4.37494 4.43854 4.47304 4.52593 4.56424 4.58314 4.61267 4.66207 4.71022 4.81195 4.82204 4.87183 4.95690 5.01536 5.18503 5.22306 5.31159 5.38580 5.44013 5.49341 5.52474 5.71636 6.00581 6.28105 6.43641 6.56454 7.17582 7.34167 8.10925 8.34537 9.28340 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.033325 B = 0.001586 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.001143 B =17646.674954 C =18150.222205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.057 3.943 4 C 0.129 3.871 5 N -0.356 5.356 6 C 0.139 3.861 7 C -0.309 4.309 8 C 0.602 3.398 9 O -0.599 6.599 10 N -0.614 5.614 11 C 0.090 3.910 12 C -0.119 4.119 13 C -0.085 4.085 14 H 0.089 0.911 15 C -0.099 4.099 16 C 0.147 3.853 17 N -0.747 5.747 18 C -0.251 4.251 19 H 0.071 0.929 20 C -0.073 4.073 21 N -0.968 5.968 22 Si 0.973 3.027 23 H -0.292 1.292 24 H -0.280 1.280 25 H -0.277 1.277 26 C 0.111 3.889 27 C 0.080 3.920 28 N -0.316 5.316 29 H 0.103 0.897 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.106 0.894 35 H 0.132 0.868 36 H 0.207 0.793 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.110 0.890 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.018 0.982 44 H 0.012 0.988 45 H 0.375 0.625 46 H 0.252 0.748 47 H 0.055 0.945 48 H 0.061 0.939 49 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.972 -26.507 -12.212 37.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.021 4.021 4 C 0.009 3.991 5 N -0.135 5.135 6 C -0.013 4.013 7 C -0.324 4.324 8 C 0.393 3.607 9 O -0.481 6.481 10 N -0.346 5.346 11 C -0.032 4.032 12 C -0.157 4.157 13 C -0.105 4.105 14 H 0.107 0.893 15 C -0.137 4.137 16 C 0.021 3.979 17 N -0.390 5.390 18 C -0.383 4.383 19 H 0.089 0.911 20 C -0.266 4.266 21 N -0.618 5.618 22 Si 0.802 3.198 23 H -0.218 1.218 24 H -0.206 1.206 25 H -0.203 1.203 26 C -0.012 4.012 27 C -0.107 4.107 28 N -0.135 5.135 29 H 0.122 0.878 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.125 0.875 35 H 0.150 0.850 36 H 0.223 0.777 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.104 0.896 40 H 0.128 0.872 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.036 0.964 44 H 0.030 0.970 45 H 0.207 0.793 46 H 0.061 0.939 47 H 0.074 0.926 48 H 0.079 0.921 49 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -23.376 -27.687 -12.450 38.314 hybrid contribution 1.281 1.277 1.429 2.305 sum -22.095 -26.409 -11.021 36.154 Atomic orbital electron populations 1.22968 0.78692 1.04277 1.00948 1.87755 1.21989 1.26994 1.95682 1.22547 0.92572 0.85295 1.01675 1.21752 0.92554 0.77463 1.07319 1.48520 1.32209 1.12614 1.20190 1.23293 0.89959 0.93881 0.94194 1.20103 1.11133 0.96657 1.04525 1.17258 0.80623 0.80178 0.82602 1.90758 1.52568 1.76121 1.28675 1.48304 1.44437 1.11858 1.29970 1.22656 0.98301 0.94627 0.87605 1.22774 0.94857 0.95432 1.02648 1.22207 0.98926 0.93654 0.95714 0.89263 1.21517 0.95705 0.96517 1.00011 1.20874 0.95223 0.86678 0.95127 1.42578 1.22851 1.06652 1.66919 1.19610 0.97620 0.94203 1.26880 0.91067 1.25554 1.02242 0.95554 1.03205 1.69805 1.39425 0.99841 1.52769 0.85223 0.79646 0.76370 0.78601 1.21778 1.20613 1.20317 1.22266 0.93109 0.89211 0.96567 1.25117 0.92388 0.98836 0.94377 1.77167 1.24989 0.97347 1.14045 0.87824 0.93209 0.93191 0.92687 0.92241 0.87547 0.84994 0.77674 0.88832 0.88906 0.89636 0.87188 0.91885 0.90667 0.96410 0.96961 0.79302 0.93921 0.92638 0.92056 0.76067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 113.37 1.25 1.43 16 2 O -0.41 -4.67 10.70 -148.98 -1.59 -6.27 16 3 C 0.06 0.58 6.11 71.98 0.44 1.02 16 4 C 0.13 1.16 6.86 86.38 0.59 1.75 16 5 N -0.36 -5.16 3.65 -346.30 -1.26 -6.43 16 6 C 0.14 2.31 11.25 84.28 0.95 3.26 16 7 C -0.31 -6.32 6.09 -20.16 -0.12 -6.44 16 8 C 0.60 16.33 7.85 86.66 0.68 17.01 16 9 O -0.60 -21.35 17.15 -4.04 -0.07 -21.42 16 10 N -0.61 -14.33 3.33 -815.55 -2.71 -17.04 16 11 C 0.09 1.24 4.99 86.74 0.43 1.67 16 12 C -0.12 -1.73 6.42 31.80 0.20 -1.53 16 13 C -0.09 -1.93 3.04 -9.40 -0.03 -1.95 16 14 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 15 C -0.10 -2.94 4.84 30.59 0.15 -2.79 16 16 C 0.15 5.98 6.14 86.38 0.53 6.51 16 17 N -0.75 -39.10 5.60 -343.46 -1.92 -41.02 16 18 C -0.25 -14.56 9.99 84.03 0.84 -13.72 16 19 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 20 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 21 N -0.97 -59.96 13.06 21.65 0.28 -59.68 16 22 Si 0.97 47.09 29.55 68.60 2.03 49.12 16 23 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 24 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 25 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 26 C 0.11 3.00 5.71 86.86 0.50 3.50 16 27 C 0.08 1.28 10.44 85.65 0.89 2.18 16 28 N -0.32 -5.46 12.33 -56.27 -0.69 -6.16 16 29 H 0.10 0.41 8.14 -2.38 -0.02 0.40 16 30 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.13 0.60 8.06 -2.38 -0.02 0.58 16 36 H 0.21 2.57 8.06 -2.91 -0.02 2.55 16 37 H 0.09 0.94 6.83 -2.39 -0.02 0.92 16 38 H 0.09 0.94 6.99 -2.39 -0.02 0.93 16 39 H 0.08 1.21 8.04 -2.39 -0.02 1.19 16 40 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.06 1.91 8.03 -2.39 -0.02 1.89 16 42 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.01 0.52 7.59 -2.39 -0.02 0.51 16 45 H 0.38 20.48 7.67 -92.71 -0.71 19.77 16 46 H 0.25 15.10 8.31 -92.70 -0.77 14.33 16 47 H 0.06 1.77 8.00 -2.39 -0.02 1.75 16 48 H 0.06 1.77 7.96 -2.38 -0.02 1.75 16 49 H 0.22 2.19 4.47 -2.91 -0.01 2.18 16 Total: -1.00 -79.62 402.19 2.06 -77.56 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 0.24 Total: 23.26 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 7.77 Total: 8.07 kcal Atomic # 7 Polarization: -124.01 SS G_CDS: -6.31 Total: -130.32 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -1.66 Total: -27.69 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -79.62 2.06 -77.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717106906.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.989 kcal (2) G-P(sol) polarization free energy of solvation -79.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds