Wall clock time and date at job start Tue Mar 31 2020 19:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 114.00256 * 2 1 4 4 C 1.52995 * 109.47100 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47007 * 180.02562 * 4 3 2 6 6 C 1.34259 * 125.75762 * 125.00309 * 5 4 3 7 7 C 1.38036 * 107.41968 * 179.97438 * 6 5 4 8 8 C 1.47436 * 126.41450 * 179.97438 * 7 6 5 9 9 O 1.21602 * 120.00091 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99867 * 179.72839 * 8 7 6 11 11 C 1.47023 * 125.65051 * 359.68927 * 10 8 7 12 12 C 1.54333 * 107.26895 * 178.85311 * 11 10 8 13 13 C 1.55164 * 103.01791 * 338.14295 * 12 11 10 14 14 H 1.09008 * 111.03287 * 277.21630 * 13 12 11 15 15 C 1.52999 * 111.00547 * 153.38474 * 13 12 11 16 16 C 1.52994 * 109.47034 * 181.34564 * 15 13 12 17 17 N 1.46505 * 109.47208 * 179.97438 * 16 15 13 18 18 C 1.36938 * 120.00336 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99468 * 0.02562 * 18 17 16 20 20 C 1.38804 * 120.00141 * 179.97438 * 18 17 16 21 21 N 1.31618 * 119.99987 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99973 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47123 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47076 * 120.00197 * 22 20 18 25 25 H 1.48503 * 109.47218 * 240.00360 * 22 20 18 26 26 C 1.47429 * 125.64739 * 180.02562 * 10 8 7 27 27 C 1.41286 * 107.17192 * 0.22804 * 7 6 5 28 28 N 1.30448 * 108.02337 * 359.61207 * 27 7 6 29 29 H 1.09004 * 109.47077 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46974 * 299.99704 * 1 2 3 31 31 H 1.09001 * 109.47101 * 60.00064 * 1 2 3 32 32 H 1.09000 * 109.47047 * 60.00337 * 3 2 1 33 33 H 1.09001 * 109.47118 * 300.00342 * 3 2 1 34 34 H 1.09004 * 109.47506 * 60.00496 * 4 3 2 35 35 H 1.08991 * 109.47545 * 300.00057 * 4 3 2 36 36 H 1.08000 * 126.28511 * 359.97438 * 6 5 4 37 37 H 1.09005 * 109.87979 * 298.39819 * 11 10 8 38 38 H 1.09001 * 109.88069 * 59.56230 * 11 10 8 39 39 H 1.08995 * 110.85237 * 219.67680 * 12 11 10 40 40 H 1.09003 * 110.67154 * 96.51981 * 12 11 10 41 41 H 1.09005 * 109.47048 * 301.34749 * 15 13 12 42 42 H 1.08997 * 109.47504 * 61.34429 * 15 13 12 43 43 H 1.08995 * 109.47756 * 299.99680 * 16 15 13 44 44 H 1.09010 * 109.46947 * 59.99926 * 16 15 13 45 45 H 0.97004 * 119.99900 * 359.97438 * 17 16 15 46 46 H 0.97005 * 119.99983 * 179.97438 * 21 20 18 47 47 H 1.09005 * 110.36538 * 322.92470 * 26 10 8 48 48 H 1.08996 * 110.36623 * 85.25217 * 26 10 8 49 49 H 1.08000 * 125.99145 * 179.77305 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 4.1314 2.5229 0.0013 6 6 5.0210 2.9851 0.8942 7 6 5.3270 4.2833 0.5386 8 6 6.2621 5.1847 1.2364 9 8 6.8500 4.8007 2.2292 10 7 6.4691 6.4324 0.7711 11 6 5.8365 7.0189 -0.4196 12 6 6.3503 8.4688 -0.5442 13 6 6.8147 8.8003 0.8988 14 1 5.9739 9.1127 1.5183 15 6 7.9119 9.8665 0.8905 16 6 8.3663 10.1417 2.3253 17 7 9.4174 11.1623 2.3173 18 6 9.9819 11.5731 3.4954 19 1 9.6524 11.1444 4.4304 20 6 10.9781 12.5396 3.4878 21 7 11.3799 13.0616 2.3483 22 14 11.7475 13.1005 5.0949 23 1 11.1245 12.3657 6.2250 24 1 13.2061 12.8230 5.0688 25 1 11.5240 14.5583 5.2686 26 6 7.3726 7.4331 1.3676 27 6 4.5719 4.5886 -0.6158 28 7 3.8697 3.5348 -0.9292 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.8575 0.6435 -0.8892 35 1 3.8567 0.6438 0.8908 36 1 5.4233 2.4411 1.7360 37 1 6.1137 6.4478 -1.3058 38 1 4.7530 7.0204 -0.3009 39 1 5.5490 9.1390 -0.8549 40 1 7.1874 8.5219 -1.2403 41 1 8.7587 9.5119 0.3029 42 1 7.5232 10.7846 0.4501 43 1 7.5197 10.4964 2.9129 44 1 8.7552 9.2235 2.7657 45 1 9.7141 11.5464 1.4775 46 1 12.0759 13.7373 2.3431 47 1 7.3476 7.3661 2.4553 48 1 8.3894 7.2923 1.0012 49 1 4.5771 5.5287 -1.1474 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717106907.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:06 Heat of formation + Delta-G solvation = 15.852606 kcal Electronic energy + Delta-G solvation = -27906.106705 eV Core-core repulsion = 23870.747575 eV Total energy + Delta-G solvation = -4035.359130 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.82518 -39.83653 -38.57674 -37.63284 -35.15761 -34.43826 -32.92769 -31.08189 -30.79155 -29.94780 -29.40304 -27.34687 -26.63482 -24.74031 -24.07362 -23.29123 -22.07500 -21.41308 -20.95405 -20.07735 -19.64921 -17.89646 -17.07449 -17.04365 -16.93105 -16.20164 -16.13869 -16.01770 -15.55682 -14.88534 -14.82730 -14.58275 -14.45155 -13.99553 -13.81601 -13.54552 -13.40439 -13.22855 -13.00771 -12.85078 -12.70733 -12.48596 -12.31703 -12.03081 -11.98411 -11.64593 -11.37266 -11.27785 -11.04116 -10.81428 -10.61557 -10.43024 -10.38328 -10.29568 -10.02951 -9.94924 -9.91072 -9.63646 -9.11531 -8.82789 -8.63777 -6.87018 -5.72439 -3.00620 1.16436 1.71926 1.85620 2.93406 3.12719 3.31451 3.46857 3.52677 3.54936 3.95962 4.23462 4.31020 4.38334 4.45472 4.54293 4.58777 4.63857 4.70567 4.73615 4.78625 4.82747 4.92547 5.01036 5.07781 5.08913 5.14811 5.20944 5.37050 5.42574 5.57025 5.62084 5.70990 5.84383 5.86328 5.97022 5.98171 6.13133 6.23700 6.29381 6.30218 6.41332 6.42676 6.44485 6.89355 6.93350 7.11703 7.48528 7.75581 8.17288 8.46961 9.58031 10.16607 10.51017 11.50723 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.030831 B = 0.001603 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.966772 B =17466.506895 C =17973.499998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.051 3.949 4 C 0.134 3.866 5 N -0.362 5.362 6 C 0.132 3.868 7 C -0.285 4.285 8 C 0.607 3.393 9 O -0.548 6.548 10 N -0.614 5.614 11 C 0.094 3.906 12 C -0.130 4.130 13 C -0.094 4.094 14 H 0.085 0.915 15 C -0.114 4.114 16 C 0.150 3.850 17 N -0.734 5.734 18 C -0.237 4.237 19 H 0.071 0.929 20 C -0.015 4.015 21 N -0.935 5.935 22 Si 0.906 3.094 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.112 3.888 27 C 0.072 3.928 28 N -0.299 5.299 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.190 0.810 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.018 0.982 44 H 0.020 0.980 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.082 0.918 48 H 0.073 0.927 49 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.718 -24.949 -10.426 35.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.027 4.027 4 C 0.013 3.987 5 N -0.142 5.142 6 C -0.018 4.018 7 C -0.300 4.300 8 C 0.397 3.603 9 O -0.427 6.427 10 N -0.347 5.347 11 C -0.029 4.029 12 C -0.168 4.168 13 C -0.114 4.114 14 H 0.103 0.897 15 C -0.153 4.153 16 C 0.023 3.977 17 N -0.378 5.378 18 C -0.368 4.368 19 H 0.089 0.911 20 C -0.211 4.211 21 N -0.584 5.584 22 Si 0.737 3.263 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.009 4.009 27 C -0.116 4.116 28 N -0.118 5.118 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.118 0.882 35 H 0.128 0.872 36 H 0.207 0.793 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.036 0.964 44 H 0.038 0.962 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.101 0.899 48 H 0.091 0.909 49 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -23.206 -26.061 -10.511 36.444 hybrid contribution 0.909 1.086 1.088 1.786 sum -22.297 -24.974 -9.422 34.780 Atomic orbital electron populations 1.22797 0.79783 1.03220 1.00460 1.87779 1.20711 1.26794 1.95619 1.22642 0.92382 0.85476 1.02176 1.21506 0.92814 0.78593 1.05833 1.48343 1.33004 1.12101 1.20790 1.22996 0.90558 0.94247 0.94048 1.20224 1.10203 0.96214 1.03338 1.16821 0.80704 0.79733 0.83031 1.90797 1.50630 1.74812 1.26436 1.48242 1.45115 1.12684 1.28659 1.22362 0.97519 0.94833 0.88177 1.22759 1.01913 0.94204 0.97916 1.22348 0.99121 0.94236 0.95683 0.89663 1.21681 0.96891 0.97455 0.99230 1.20692 0.91540 0.92383 0.93107 1.42377 1.42750 1.45733 1.06983 1.19303 1.14239 1.16622 0.86664 0.91129 1.24731 0.99757 0.99777 0.96845 1.69672 1.33005 1.31776 1.23922 0.86121 0.78978 0.78169 0.82994 1.20536 1.21889 1.21904 1.22405 0.93153 0.85814 0.99559 1.24814 0.93420 0.98126 0.95210 1.77183 1.24536 0.96740 1.13355 0.89078 0.93720 0.93641 0.92523 0.91416 0.88225 0.87212 0.79270 0.91077 0.91099 0.89807 0.90108 0.91569 0.91308 0.96441 0.96202 0.78346 0.93632 0.89940 0.90899 0.78266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.39 -2.52 10.70 -35.23 -0.38 -2.90 16 3 C 0.05 0.30 6.11 37.16 0.23 0.52 16 4 C 0.13 0.72 6.86 -4.04 -0.03 0.69 16 5 N -0.36 -2.94 3.65 -60.81 -0.22 -3.17 16 6 C 0.13 1.18 11.25 -16.56 -0.19 1.00 16 7 C -0.29 -3.08 6.09 -105.07 -0.64 -3.72 16 8 C 0.61 8.27 7.85 -12.52 -0.10 8.17 16 9 O -0.55 -9.45 17.16 5.28 0.09 -9.36 16 10 N -0.61 -7.41 3.33 -171.76 -0.57 -7.99 16 11 C 0.09 0.79 4.98 -3.06 -0.02 0.77 16 12 C -0.13 -1.14 6.42 -24.89 -0.16 -1.30 16 13 C -0.09 -1.12 3.08 -88.46 -0.27 -1.39 16 14 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16 15 C -0.11 -1.73 4.84 -26.73 -0.13 -1.86 16 16 C 0.15 3.02 6.11 -4.04 -0.02 2.99 16 17 N -0.73 -18.92 5.60 -59.91 -0.34 -19.25 16 18 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 19 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 20 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 21 N -0.93 -28.64 13.06 55.49 0.72 -27.92 16 22 Si 0.91 22.82 29.55 -169.99 -5.02 17.80 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 26 C 0.11 1.50 5.56 -2.52 -0.01 1.49 16 27 C 0.07 0.65 10.45 -16.98 -0.18 0.48 16 28 N -0.30 -2.88 12.33 30.86 0.38 -2.50 16 29 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.11 0.37 8.06 -51.93 -0.42 -0.05 16 36 H 0.19 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.07 0.50 7.05 -51.93 -0.37 0.13 16 38 H 0.07 0.49 6.77 -51.93 -0.35 0.13 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.70 8.04 -51.93 -0.42 0.29 16 41 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.02 0.41 7.46 -51.92 -0.39 0.02 16 45 H 0.38 10.27 7.67 -40.82 -0.31 9.96 16 46 H 0.25 7.49 8.31 -40.82 -0.34 7.16 16 47 H 0.08 1.24 7.97 -51.93 -0.41 0.83 16 48 H 0.07 1.03 8.00 -51.93 -0.42 0.61 16 49 H 0.20 1.32 4.47 -52.49 -0.23 1.09 16 LS Contribution 402.01 15.07 6.06 6.06 Total: -1.00 -36.31 402.01 -7.86 -44.17 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -7.94 Total: 3.44 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -0.65 Total: 1.60 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: -0.02 Total: -60.82 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -0.29 Total: -12.25 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.31 -7.86 -44.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717106907.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.027 kcal (2) G-P(sol) polarization free energy of solvation -36.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds