Wall clock time and date at job start Tue Mar 31 2020 19:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 114.00256 * 2 1 4 4 C 1.52995 * 109.47100 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47007 * 180.02562 * 4 3 2 6 6 C 1.34259 * 125.75762 * 125.00309 * 5 4 3 7 7 C 1.38036 * 107.41968 * 179.97438 * 6 5 4 8 8 C 1.47436 * 126.41450 * 179.97438 * 7 6 5 9 9 O 1.21602 * 120.00091 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99867 * 179.72839 * 8 7 6 11 11 C 1.47023 * 125.65051 * 359.68927 * 10 8 7 12 12 C 1.54333 * 107.26895 * 178.85311 * 11 10 8 13 13 C 1.55164 * 103.01791 * 338.14295 * 12 11 10 14 14 H 1.09008 * 111.03287 * 277.21630 * 13 12 11 15 15 C 1.52999 * 111.00547 * 153.38474 * 13 12 11 16 16 C 1.52994 * 109.47034 * 181.34564 * 15 13 12 17 17 N 1.46505 * 109.47208 * 179.97438 * 16 15 13 18 18 C 1.36938 * 120.00336 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99468 * 0.02562 * 18 17 16 20 20 C 1.38804 * 120.00141 * 179.97438 * 18 17 16 21 21 N 1.31618 * 119.99987 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99973 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47123 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47076 * 120.00197 * 22 20 18 25 25 H 1.48503 * 109.47218 * 240.00360 * 22 20 18 26 26 C 1.47429 * 125.64739 * 180.02562 * 10 8 7 27 27 C 1.41286 * 107.17192 * 0.22804 * 7 6 5 28 28 N 1.30448 * 108.02337 * 359.61207 * 27 7 6 29 29 H 1.09004 * 109.47077 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46974 * 299.99704 * 1 2 3 31 31 H 1.09001 * 109.47101 * 60.00064 * 1 2 3 32 32 H 1.09000 * 109.47047 * 60.00337 * 3 2 1 33 33 H 1.09001 * 109.47118 * 300.00342 * 3 2 1 34 34 H 1.09004 * 109.47506 * 60.00496 * 4 3 2 35 35 H 1.08991 * 109.47545 * 300.00057 * 4 3 2 36 36 H 1.08000 * 126.28511 * 359.97438 * 6 5 4 37 37 H 1.09005 * 109.87979 * 298.39819 * 11 10 8 38 38 H 1.09001 * 109.88069 * 59.56230 * 11 10 8 39 39 H 1.08995 * 110.85237 * 219.67680 * 12 11 10 40 40 H 1.09003 * 110.67154 * 96.51981 * 12 11 10 41 41 H 1.09005 * 109.47048 * 301.34749 * 15 13 12 42 42 H 1.08997 * 109.47504 * 61.34429 * 15 13 12 43 43 H 1.08995 * 109.47756 * 299.99680 * 16 15 13 44 44 H 1.09010 * 109.46947 * 59.99926 * 16 15 13 45 45 H 0.97004 * 119.99900 * 359.97438 * 17 16 15 46 46 H 0.97005 * 119.99983 * 179.97438 * 21 20 18 47 47 H 1.09005 * 110.36538 * 322.92470 * 26 10 8 48 48 H 1.08996 * 110.36623 * 85.25217 * 26 10 8 49 49 H 1.08000 * 125.99145 * 179.77305 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 4.1314 2.5229 0.0013 6 6 5.0210 2.9851 0.8942 7 6 5.3270 4.2833 0.5386 8 6 6.2621 5.1847 1.2364 9 8 6.8500 4.8007 2.2292 10 7 6.4691 6.4324 0.7711 11 6 5.8365 7.0189 -0.4196 12 6 6.3503 8.4688 -0.5442 13 6 6.8147 8.8003 0.8988 14 1 5.9739 9.1127 1.5183 15 6 7.9119 9.8665 0.8905 16 6 8.3663 10.1417 2.3253 17 7 9.4174 11.1623 2.3173 18 6 9.9819 11.5731 3.4954 19 1 9.6524 11.1444 4.4304 20 6 10.9781 12.5396 3.4878 21 7 11.3799 13.0616 2.3483 22 14 11.7475 13.1005 5.0949 23 1 11.1245 12.3657 6.2250 24 1 13.2061 12.8230 5.0688 25 1 11.5240 14.5583 5.2686 26 6 7.3726 7.4331 1.3676 27 6 4.5719 4.5886 -0.6158 28 7 3.8697 3.5348 -0.9292 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.8575 0.6435 -0.8892 35 1 3.8567 0.6438 0.8908 36 1 5.4233 2.4411 1.7360 37 1 6.1137 6.4478 -1.3058 38 1 4.7530 7.0204 -0.3009 39 1 5.5490 9.1390 -0.8549 40 1 7.1874 8.5219 -1.2403 41 1 8.7587 9.5119 0.3029 42 1 7.5232 10.7846 0.4501 43 1 7.5197 10.4964 2.9129 44 1 8.7552 9.2235 2.7657 45 1 9.7141 11.5464 1.4775 46 1 12.0759 13.7373 2.3431 47 1 7.3476 7.3661 2.4553 48 1 8.3894 7.2923 1.0012 49 1 4.5771 5.5287 -1.1474 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717106907.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:04 Heat of formation + Delta-G solvation = -9.767627 kcal Electronic energy + Delta-G solvation = -27907.217681 eV Core-core repulsion = 23870.747575 eV Total energy + Delta-G solvation = -4036.470107 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.52718 -40.77177 -39.02048 -38.70183 -36.83280 -35.12943 -34.40175 -32.68518 -31.52177 -30.74711 -30.43225 -28.47176 -27.22201 -26.08482 -24.85791 -24.54687 -23.09848 -22.54602 -21.71352 -21.15785 -20.50021 -19.13714 -18.56957 -17.70932 -17.40493 -17.22235 -16.84017 -16.65471 -16.56517 -16.31906 -15.79614 -15.50749 -15.36000 -15.16783 -15.08707 -14.82915 -14.40390 -14.27629 -14.12779 -13.81159 -13.65273 -13.24462 -13.06990 -12.97108 -12.85080 -12.80591 -12.72223 -12.36829 -12.28111 -12.10779 -12.03636 -11.95928 -11.65448 -11.50822 -11.35966 -10.97042 -10.92612 -10.79548 -10.67637 -9.92679 -9.53974 -8.99154 -7.95650 -5.24166 0.43392 1.09811 1.16044 1.47114 1.47971 1.58281 2.03035 2.39199 2.56061 2.71366 3.35956 3.38229 3.57565 3.66222 3.75904 3.83372 3.84326 3.88390 3.98648 4.17426 4.20028 4.26652 4.32800 4.37635 4.43972 4.47345 4.52419 4.56276 4.58599 4.61332 4.66211 4.71011 4.80936 4.82301 4.87117 4.95531 5.01583 5.18764 5.21935 5.31359 5.38447 5.44112 5.49672 5.52362 5.71669 6.00745 6.27843 6.43717 6.56562 7.17686 7.33820 8.10451 8.33973 9.28095 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.030831 B = 0.001603 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.966772 B =17466.506895 C =17973.499998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.057 3.943 4 C 0.129 3.871 5 N -0.356 5.356 6 C 0.139 3.861 7 C -0.309 4.309 8 C 0.602 3.398 9 O -0.599 6.599 10 N -0.614 5.614 11 C 0.090 3.910 12 C -0.120 4.120 13 C -0.085 4.085 14 H 0.090 0.910 15 C -0.099 4.099 16 C 0.147 3.853 17 N -0.747 5.747 18 C -0.248 4.248 19 H 0.072 0.928 20 C -0.074 4.074 21 N -0.968 5.968 22 Si 0.972 3.028 23 H -0.269 1.269 24 H -0.292 1.292 25 H -0.290 1.290 26 C 0.111 3.889 27 C 0.080 3.920 28 N -0.316 5.316 29 H 0.103 0.897 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.106 0.894 35 H 0.132 0.868 36 H 0.207 0.793 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.018 0.982 44 H 0.013 0.987 45 H 0.375 0.625 46 H 0.252 0.748 47 H 0.055 0.945 48 H 0.060 0.940 49 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.471 -25.779 -11.300 37.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.021 4.021 4 C 0.009 3.991 5 N -0.135 5.135 6 C -0.013 4.013 7 C -0.324 4.324 8 C 0.393 3.607 9 O -0.481 6.481 10 N -0.346 5.346 11 C -0.032 4.032 12 C -0.157 4.157 13 C -0.105 4.105 14 H 0.108 0.892 15 C -0.138 4.138 16 C 0.021 3.979 17 N -0.390 5.390 18 C -0.380 4.380 19 H 0.090 0.910 20 C -0.266 4.266 21 N -0.619 5.619 22 Si 0.801 3.199 23 H -0.193 1.193 24 H -0.219 1.219 25 H -0.217 1.217 26 C -0.012 4.012 27 C -0.107 4.107 28 N -0.135 5.135 29 H 0.122 0.878 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.125 0.875 35 H 0.150 0.850 36 H 0.223 0.777 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.128 0.872 40 H 0.103 0.897 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.036 0.964 44 H 0.031 0.969 45 H 0.207 0.793 46 H 0.061 0.939 47 H 0.074 0.926 48 H 0.079 0.921 49 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -25.022 -26.914 -11.419 38.481 hybrid contribution 1.387 1.249 1.361 2.310 sum -23.635 -25.665 -10.058 36.310 Atomic orbital electron populations 1.22969 0.78687 1.04275 1.00951 1.87753 1.21992 1.27000 1.95681 1.22547 0.92565 0.85298 1.01680 1.21751 0.92556 0.77462 1.07317 1.48521 1.32418 1.12587 1.20007 1.23291 0.89976 0.93918 0.94152 1.20104 1.11068 0.96682 1.04556 1.17262 0.80601 0.80226 0.82579 1.90758 1.52754 1.75892 1.28718 1.48309 1.44674 1.12122 1.29476 1.22650 0.98655 0.94518 0.87352 1.22768 1.02917 0.94803 0.95260 1.22207 0.97872 0.91976 0.98408 0.89201 1.21519 0.97828 0.98810 0.95606 1.20879 0.89984 0.90455 0.96608 1.42600 1.43839 1.46736 1.05837 1.19678 1.14218 1.16382 0.87730 0.91042 1.25546 1.00627 1.00307 1.00136 1.69814 1.33674 1.32472 1.25927 0.85090 0.77751 0.77577 0.79457 1.19322 1.21919 1.21676 1.22268 0.93275 0.87460 0.98150 1.25115 0.92361 0.98811 0.94424 1.77165 1.25062 0.97214 1.14108 0.87828 0.93197 0.93195 0.92677 0.92239 0.87544 0.85008 0.77681 0.88956 0.88748 0.87157 0.89706 0.91862 0.90683 0.96413 0.96909 0.79299 0.93925 0.92594 0.92131 0.76062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 113.37 1.25 1.43 16 2 O -0.41 -4.67 10.70 -148.98 -1.59 -6.26 16 3 C 0.06 0.58 6.11 71.98 0.44 1.02 16 4 C 0.13 1.16 6.86 86.38 0.59 1.75 16 5 N -0.36 -5.17 3.65 -346.31 -1.26 -6.43 16 6 C 0.14 2.31 11.25 84.27 0.95 3.26 16 7 C -0.31 -6.33 6.09 -20.15 -0.12 -6.45 16 8 C 0.60 16.35 7.85 86.67 0.68 17.03 16 9 O -0.60 -21.38 17.16 -4.04 -0.07 -21.45 16 10 N -0.61 -14.35 3.33 -815.58 -2.71 -17.06 16 11 C 0.09 1.24 4.98 86.73 0.43 1.67 16 12 C -0.12 -1.73 6.42 31.79 0.20 -1.53 16 13 C -0.08 -1.91 3.08 -9.39 -0.03 -1.94 16 14 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 15 C -0.10 -2.94 4.84 30.59 0.15 -2.79 16 16 C 0.15 5.96 6.11 86.38 0.53 6.49 16 17 N -0.75 -39.06 5.60 -343.45 -1.92 -40.98 16 18 C -0.25 -14.37 9.99 84.03 0.84 -13.53 16 19 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 20 C -0.07 -4.34 5.50 84.86 0.47 -3.88 16 21 N -0.97 -60.01 13.06 21.65 0.28 -59.72 16 22 Si 0.97 47.17 29.55 68.60 2.03 49.20 16 23 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 25 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 26 C 0.11 3.01 5.56 86.86 0.48 3.49 16 27 C 0.08 1.28 10.45 85.65 0.89 2.18 16 28 N -0.32 -5.46 12.33 -56.28 -0.69 -6.16 16 29 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 30 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.13 0.60 8.06 -2.39 -0.02 0.58 16 36 H 0.21 2.58 8.06 -2.91 -0.02 2.56 16 37 H 0.09 0.96 7.05 -2.38 -0.02 0.94 16 38 H 0.09 0.92 6.77 -2.39 -0.02 0.91 16 39 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 1.21 8.04 -2.39 -0.02 1.19 16 41 H 0.06 1.91 8.10 -2.38 -0.02 1.89 16 42 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.01 0.54 7.46 -2.38 -0.02 0.53 16 45 H 0.38 20.47 7.67 -92.71 -0.71 19.76 16 46 H 0.25 15.04 8.31 -92.70 -0.77 14.27 16 47 H 0.06 1.79 7.97 -2.38 -0.02 1.77 16 48 H 0.06 1.76 8.00 -2.39 -0.02 1.74 16 49 H 0.22 2.19 4.47 -2.91 -0.01 2.18 16 Total: -1.00 -79.74 402.01 2.05 -77.70 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 0.24 Total: 22.95 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 7.75 Total: 8.23 kcal Atomic # 7 Polarization: -124.05 SS G_CDS: -6.31 Total: -130.36 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -1.66 Total: -27.72 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -79.74 2.05 -77.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717106907.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.930 kcal (2) G-P(sol) polarization free energy of solvation -79.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds