Wall clock time and date at job start Tue Mar 31 2020 19:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99841 * 2 1 4 4 C 1.53000 * 109.47232 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47346 * 179.97438 * 4 3 2 6 6 C 1.34254 * 125.75484 * 125.33821 * 5 4 3 7 7 C 1.38046 * 107.41489 * 180.16051 * 6 5 4 8 8 C 1.47432 * 126.41195 * 179.83451 * 7 6 5 9 9 O 1.21603 * 120.00137 * 359.71659 * 8 7 6 10 10 N 1.34777 * 119.99549 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99724 * 179.72679 * 10 8 7 12 12 H 1.08996 * 110.43745 * 34.29873 * 11 10 8 13 13 C 1.54265 * 110.48495 * 271.75996 * 11 10 8 14 14 C 1.53876 * 106.60006 * 217.71084 * 13 11 10 15 15 C 1.54275 * 106.59723 * 0.02562 * 14 13 11 16 16 H 1.09001 * 110.48303 * 264.79833 * 15 14 13 17 17 C 1.52998 * 110.48675 * 142.28775 * 15 14 13 18 18 N 1.46499 * 109.47169 * 66.45255 * 17 15 14 19 19 C 1.36932 * 119.99937 * 179.97438 * 18 17 15 20 20 H 1.08006 * 120.00238 * 0.02562 * 19 18 17 21 21 C 1.38816 * 120.00231 * 180.02562 * 19 18 17 22 22 N 1.31618 * 119.99447 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00162 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46930 * 59.99918 * 23 21 19 25 25 H 1.48496 * 109.46911 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47005 * 299.99856 * 23 21 19 27 27 C 1.54887 * 110.48514 * 156.84221 * 11 10 8 28 28 C 1.41285 * 107.17066 * 359.57646 * 7 6 5 29 29 N 1.30443 * 108.02583 * 0.26318 * 28 7 6 30 30 H 1.09004 * 109.47163 * 299.99907 * 1 2 3 31 31 H 1.08994 * 109.47564 * 60.00174 * 1 2 3 32 32 H 1.09002 * 109.47040 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47441 * 59.99851 * 3 2 1 34 34 H 1.09002 * 109.46869 * 299.99879 * 3 2 1 35 35 H 1.08996 * 109.47017 * 59.99606 * 4 3 2 36 36 H 1.09002 * 109.47107 * 299.99748 * 4 3 2 37 37 H 1.07997 * 126.29481 * 0.03767 * 6 5 4 38 38 H 0.97000 * 120.00483 * 359.73112 * 10 8 7 39 39 H 1.09003 * 110.03281 * 336.99706 * 13 11 10 40 40 H 1.09001 * 110.03716 * 98.42905 * 13 11 10 41 41 H 1.09004 * 110.03515 * 119.28182 * 14 13 11 42 42 H 1.08997 * 110.03681 * 240.71924 * 14 13 11 43 43 H 1.09000 * 109.46660 * 186.45610 * 17 15 14 44 44 H 1.09003 * 109.47013 * 306.44814 * 17 15 14 45 45 H 0.96999 * 119.99970 * 0.02562 * 18 17 15 46 46 H 0.97004 * 119.99355 * 179.97438 * 22 21 19 47 47 H 1.08990 * 110.75955 * 274.93271 * 27 11 10 48 48 H 1.09000 * 110.75473 * 38.31116 * 27 11 10 49 49 H 1.08007 * 125.98828 * 180.29348 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 4.1313 2.5231 0.0000 6 6 5.0257 2.9840 0.8888 7 6 5.3265 4.2843 0.5359 8 6 6.2620 5.1860 1.2326 9 8 6.8516 4.8022 2.2244 10 7 6.4597 6.4375 0.7730 11 6 7.3848 7.3357 1.4687 12 1 8.2217 6.7736 1.8831 13 6 6.6503 8.1100 2.5826 14 6 7.2381 9.5320 2.5905 15 6 8.3089 9.5724 1.4806 16 1 9.2970 9.3756 1.8966 17 6 8.2896 10.9256 0.7670 18 7 8.7155 11.9743 1.6970 19 6 8.7773 13.2767 1.2786 20 1 8.5117 13.5309 0.2631 21 6 9.1815 14.2704 2.1597 22 7 9.5057 13.9605 3.3971 23 14 9.2651 16.0471 1.5891 24 1 7.9187 16.4880 1.1442 25 1 9.7223 16.9062 2.7107 26 1 10.2214 16.1595 0.4585 27 6 7.8949 8.4384 0.5082 28 6 4.5746 4.5870 -0.6213 29 7 3.8686 3.5346 -0.9307 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6885 1.8464 0.8899 34 1 1.6885 1.8464 -0.8900 35 1 3.8574 0.6436 -0.8890 36 1 3.8567 0.6440 0.8909 37 1 5.4333 2.4386 1.7271 38 1 5.9895 6.7437 -0.0182 39 1 5.5822 8.1486 2.3686 40 1 6.8213 7.6300 3.5462 41 1 6.4553 10.2609 2.3803 42 1 7.6944 9.7421 3.5578 43 1 8.9694 10.8969 -0.0845 44 1 7.2790 11.1379 0.4180 45 1 8.9545 11.7460 2.6090 46 1 9.7885 14.6549 4.0126 47 1 8.7524 8.0855 -0.0645 48 1 7.0970 8.7724 -0.1550 49 1 4.5832 5.5252 -1.1564 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717884895.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:00 Heat of formation + Delta-G solvation = -3.537173 kcal Electronic energy + Delta-G solvation = -27651.439897 eV Core-core repulsion = 23615.239963 eV Total energy + Delta-G solvation = -4036.199934 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.80914 -39.64791 -38.59080 -37.81331 -34.79842 -34.45842 -33.29853 -31.14115 -30.82749 -29.79368 -28.71199 -27.64004 -26.80770 -24.51624 -24.01458 -23.09612 -22.13860 -21.21366 -20.47972 -20.39961 -19.13388 -18.32948 -17.14036 -17.02477 -16.91805 -16.24131 -16.07717 -15.84434 -15.48228 -15.28323 -14.78304 -14.56225 -14.33580 -14.19427 -13.82418 -13.47751 -13.26315 -13.17534 -13.09943 -12.79034 -12.67748 -12.32117 -12.00040 -11.96262 -11.74905 -11.52259 -11.36666 -11.02216 -10.81088 -10.68383 -10.43731 -10.39330 -10.31825 -10.07374 -10.06908 -9.95447 -9.88136 -9.62317 -9.21402 -8.91048 -8.81603 -6.86329 -5.71874 -2.99977 1.14362 1.68694 1.81940 3.10913 3.17546 3.31791 3.46804 3.50996 3.52221 3.95567 4.21972 4.34480 4.35907 4.55754 4.62360 4.69770 4.71828 4.73001 4.83230 4.86841 4.90921 4.99649 5.07322 5.12100 5.13121 5.34060 5.55342 5.59920 5.68394 5.71827 5.77074 5.91129 5.97352 5.99065 6.17731 6.24014 6.27429 6.34246 6.40542 6.40916 6.51719 6.66716 6.69457 6.87155 6.99850 7.07702 7.50263 7.73305 8.21928 8.47385 9.58331 10.17896 10.52575 11.51012 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.031434 B = 0.001512 C = 0.001491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.535314 B =18510.368265 C =18775.656362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.051 3.949 4 C 0.134 3.866 5 N -0.362 5.362 6 C 0.132 3.868 7 C -0.290 4.290 8 C 0.594 3.406 9 O -0.550 6.550 10 N -0.718 5.718 11 C 0.142 3.858 12 H 0.093 0.907 13 C -0.133 4.133 14 C -0.112 4.112 15 C -0.095 4.095 16 H 0.076 0.924 17 C 0.161 3.839 18 N -0.732 5.732 19 C -0.239 4.239 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.934 5.934 23 Si 0.906 3.094 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.121 4.121 28 C 0.085 3.915 29 N -0.297 5.297 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.190 0.810 38 H 0.398 0.602 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.017 0.983 44 H 0.018 0.982 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.071 0.929 48 H 0.073 0.927 49 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.009 -29.674 -7.858 34.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.027 4.027 4 C 0.013 3.987 5 N -0.142 5.142 6 C -0.019 4.019 7 C -0.305 4.305 8 C 0.381 3.619 9 O -0.429 6.429 10 N -0.367 5.367 11 C 0.038 3.962 12 H 0.112 0.888 13 C -0.171 4.171 14 C -0.150 4.150 15 C -0.114 4.114 16 H 0.095 0.905 17 C 0.034 3.966 18 N -0.376 5.376 19 C -0.371 4.371 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.582 5.582 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.159 4.159 28 C -0.103 4.103 29 N -0.116 5.116 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.128 0.872 37 H 0.207 0.793 38 H 0.232 0.768 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.035 0.965 44 H 0.036 0.964 45 H 0.218 0.782 46 H 0.065 0.935 47 H 0.090 0.910 48 H 0.091 0.909 49 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -16.412 -30.618 -8.060 35.662 hybrid contribution 0.226 1.725 0.214 1.753 sum -16.186 -28.893 -7.846 34.035 Atomic orbital electron populations 1.22796 0.79757 1.03229 1.00483 1.87777 1.20733 1.26779 1.95623 1.22643 0.92359 0.85493 1.02203 1.21509 0.92850 0.78553 1.05825 1.48326 1.32806 1.12105 1.21005 1.23017 0.90492 0.94301 0.94055 1.20330 1.10451 0.96343 1.03358 1.17209 0.80454 0.81063 0.83157 1.90780 1.49920 1.75947 1.26223 1.45862 1.46408 1.12863 1.31601 1.21922 0.91765 0.89719 0.92814 0.88845 1.22557 0.99783 0.96122 0.98687 1.22099 0.98445 0.95146 0.99312 1.22112 0.99157 0.94848 0.95314 0.90543 1.20670 0.96754 0.86531 0.92668 1.42341 1.80765 1.02930 1.11547 1.19196 1.37630 0.84104 0.96137 0.91330 1.24729 1.02403 0.97974 0.95902 1.69654 1.51892 1.32288 1.04396 0.86278 0.77687 0.85026 0.77258 1.21338 1.21714 1.21323 1.22760 1.01006 0.94679 0.97486 1.24124 0.93475 0.97821 0.94885 1.77173 1.24341 0.96871 1.13241 0.93715 0.93621 0.89071 0.92504 0.91407 0.88239 0.87191 0.79317 0.76789 0.91849 0.91688 0.91161 0.91535 0.96530 0.96385 0.78217 0.93526 0.91049 0.90850 0.79151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.25 16 2 O -0.39 -2.45 10.70 -35.23 -0.38 -2.83 16 3 C 0.05 0.28 6.11 37.16 0.23 0.51 16 4 C 0.13 0.67 6.86 -4.04 -0.03 0.64 16 5 N -0.36 -2.73 3.65 -60.81 -0.22 -2.96 16 6 C 0.13 1.07 11.25 -16.56 -0.19 0.89 16 7 C -0.29 -2.77 6.13 -105.07 -0.64 -3.42 16 8 C 0.59 7.06 7.81 -12.52 -0.10 6.97 16 9 O -0.55 -8.54 16.58 5.27 0.09 -8.45 16 10 N -0.72 -7.37 5.09 -53.27 -0.27 -7.64 16 11 C 0.14 1.73 3.18 -66.27 -0.21 1.52 16 12 H 0.09 1.28 7.61 -51.93 -0.40 0.88 16 13 C -0.13 -1.76 6.54 -25.61 -0.17 -1.93 16 14 C -0.11 -1.74 6.05 -25.61 -0.15 -1.90 16 15 C -0.10 -1.50 2.93 -88.89 -0.26 -1.76 16 16 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 17 C 0.16 3.20 5.58 -4.04 -0.02 3.18 16 18 N -0.73 -18.60 5.44 -59.91 -0.33 -18.92 16 19 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 20 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16 23 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 C -0.12 -1.46 5.95 -24.67 -0.15 -1.61 16 28 C 0.09 0.69 11.50 -16.98 -0.20 0.50 16 29 N -0.30 -2.69 12.33 30.86 0.38 -2.31 16 30 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.05 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.11 0.33 8.06 -51.93 -0.42 -0.09 16 37 H 0.19 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.40 2.99 7.50 -40.82 -0.31 2.68 16 39 H 0.06 0.80 8.04 -51.93 -0.42 0.39 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.07 1.18 7.77 -51.93 -0.40 0.78 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.02 0.36 8.05 -51.93 -0.42 -0.06 16 45 H 0.38 10.27 7.52 -40.82 -0.31 9.96 16 46 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 47 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.07 0.81 7.94 -51.93 -0.41 0.39 16 49 H 0.19 0.95 7.50 -52.48 -0.39 0.56 16 LS Contribution 407.86 15.07 6.15 6.15 Total: -1.00 -35.45 407.86 -7.99 -43.44 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -8.09 Total: 6.32 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -1.02 Total: -2.59 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: 0.29 Total: -59.56 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: -0.29 Total: -11.28 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.45 -7.99 -43.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717884895.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.900 kcal (2) G-P(sol) polarization free energy of solvation -35.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds