Wall clock time and date at job start Tue Mar 31 2020 19:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99841 * 2 1 4 4 C 1.53000 * 109.47232 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47346 * 179.97438 * 4 3 2 6 6 C 1.34254 * 125.75484 * 125.33821 * 5 4 3 7 7 C 1.38046 * 107.41489 * 180.16051 * 6 5 4 8 8 C 1.47432 * 126.41195 * 179.83451 * 7 6 5 9 9 O 1.21603 * 120.00137 * 359.71659 * 8 7 6 10 10 N 1.34777 * 119.99549 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99724 * 179.72679 * 10 8 7 12 12 H 1.08996 * 110.43745 * 34.29873 * 11 10 8 13 13 C 1.54265 * 110.48495 * 271.75996 * 11 10 8 14 14 C 1.53876 * 106.60006 * 217.71084 * 13 11 10 15 15 C 1.54275 * 106.59723 * 0.02562 * 14 13 11 16 16 H 1.09001 * 110.48303 * 264.79833 * 15 14 13 17 17 C 1.52998 * 110.48675 * 142.28775 * 15 14 13 18 18 N 1.46499 * 109.47169 * 66.45255 * 17 15 14 19 19 C 1.36932 * 119.99937 * 179.97438 * 18 17 15 20 20 H 1.08006 * 120.00238 * 0.02562 * 19 18 17 21 21 C 1.38816 * 120.00231 * 180.02562 * 19 18 17 22 22 N 1.31618 * 119.99447 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00162 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46930 * 59.99918 * 23 21 19 25 25 H 1.48496 * 109.46911 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47005 * 299.99856 * 23 21 19 27 27 C 1.54887 * 110.48514 * 156.84221 * 11 10 8 28 28 C 1.41285 * 107.17066 * 359.57646 * 7 6 5 29 29 N 1.30443 * 108.02583 * 0.26318 * 28 7 6 30 30 H 1.09004 * 109.47163 * 299.99907 * 1 2 3 31 31 H 1.08994 * 109.47564 * 60.00174 * 1 2 3 32 32 H 1.09002 * 109.47040 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47441 * 59.99851 * 3 2 1 34 34 H 1.09002 * 109.46869 * 299.99879 * 3 2 1 35 35 H 1.08996 * 109.47017 * 59.99606 * 4 3 2 36 36 H 1.09002 * 109.47107 * 299.99748 * 4 3 2 37 37 H 1.07997 * 126.29481 * 0.03767 * 6 5 4 38 38 H 0.97000 * 120.00483 * 359.73112 * 10 8 7 39 39 H 1.09003 * 110.03281 * 336.99706 * 13 11 10 40 40 H 1.09001 * 110.03716 * 98.42905 * 13 11 10 41 41 H 1.09004 * 110.03515 * 119.28182 * 14 13 11 42 42 H 1.08997 * 110.03681 * 240.71924 * 14 13 11 43 43 H 1.09000 * 109.46660 * 186.45610 * 17 15 14 44 44 H 1.09003 * 109.47013 * 306.44814 * 17 15 14 45 45 H 0.96999 * 119.99970 * 0.02562 * 18 17 15 46 46 H 0.97004 * 119.99355 * 179.97438 * 22 21 19 47 47 H 1.08990 * 110.75955 * 274.93271 * 27 11 10 48 48 H 1.09000 * 110.75473 * 38.31116 * 27 11 10 49 49 H 1.08007 * 125.98828 * 180.29348 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 4.1313 2.5231 0.0000 6 6 5.0257 2.9840 0.8888 7 6 5.3265 4.2843 0.5359 8 6 6.2620 5.1860 1.2326 9 8 6.8516 4.8022 2.2244 10 7 6.4597 6.4375 0.7730 11 6 7.3848 7.3357 1.4687 12 1 8.2217 6.7736 1.8831 13 6 6.6503 8.1100 2.5826 14 6 7.2381 9.5320 2.5905 15 6 8.3089 9.5724 1.4806 16 1 9.2970 9.3756 1.8966 17 6 8.2896 10.9256 0.7670 18 7 8.7155 11.9743 1.6970 19 6 8.7773 13.2767 1.2786 20 1 8.5117 13.5309 0.2631 21 6 9.1815 14.2704 2.1597 22 7 9.5057 13.9605 3.3971 23 14 9.2651 16.0471 1.5891 24 1 7.9187 16.4880 1.1442 25 1 9.7223 16.9062 2.7107 26 1 10.2214 16.1595 0.4585 27 6 7.8949 8.4384 0.5082 28 6 4.5746 4.5870 -0.6213 29 7 3.8686 3.5346 -0.9307 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6885 1.8464 0.8899 34 1 1.6885 1.8464 -0.8900 35 1 3.8574 0.6436 -0.8890 36 1 3.8567 0.6440 0.8909 37 1 5.4333 2.4386 1.7271 38 1 5.9895 6.7437 -0.0182 39 1 5.5822 8.1486 2.3686 40 1 6.8213 7.6300 3.5462 41 1 6.4553 10.2609 2.3803 42 1 7.6944 9.7421 3.5578 43 1 8.9694 10.8969 -0.0845 44 1 7.2790 11.1379 0.4180 45 1 8.9545 11.7460 2.6090 46 1 9.7885 14.6549 4.0126 47 1 8.7524 8.0855 -0.0645 48 1 7.0970 8.7724 -0.1550 49 1 4.5832 5.5252 -1.1564 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717884895.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:58 Heat of formation + Delta-G solvation = -28.575333 kcal Electronic energy + Delta-G solvation = -27652.525633 eV Core-core repulsion = 23615.239963 eV Total energy + Delta-G solvation = -4037.285670 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.43121 -40.62323 -39.09501 -38.90251 -36.40579 -35.10297 -34.57446 -32.90612 -31.50372 -30.48269 -30.05178 -28.77561 -27.25359 -26.15954 -24.59150 -23.99146 -23.79765 -21.85351 -21.48200 -21.24040 -20.38568 -19.11677 -18.93379 -17.66584 -17.38869 -17.30668 -16.66746 -16.65311 -16.48944 -16.37291 -15.88759 -15.55538 -15.30540 -15.08764 -15.03263 -14.81266 -14.49605 -14.34346 -14.13759 -13.80684 -13.34346 -13.23181 -13.07987 -12.85051 -12.72766 -12.71535 -12.50303 -12.36006 -12.19791 -12.03805 -12.00077 -11.73113 -11.66697 -11.46113 -11.27657 -10.89527 -10.87531 -10.79371 -10.65107 -10.09356 -9.66266 -8.94739 -7.91607 -5.19828 0.49484 1.14489 1.19129 1.48898 1.52126 1.58235 2.31447 2.48831 2.59412 2.72056 3.41779 3.48515 3.63872 3.69448 3.78457 3.84507 3.87407 3.93964 4.11836 4.18348 4.23403 4.29173 4.43842 4.44145 4.47766 4.55269 4.56059 4.61858 4.63164 4.66854 4.71116 4.78739 4.82138 4.84695 4.97308 5.08024 5.21326 5.22859 5.28561 5.38816 5.43084 5.52143 5.59474 5.67171 5.75161 6.00867 6.30689 6.46880 6.70558 7.36371 7.36915 8.15419 8.37738 9.31909 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.031434 B = 0.001512 C = 0.001491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.535314 B =18510.368265 C =18775.656362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.056 3.944 4 C 0.130 3.870 5 N -0.358 5.358 6 C 0.137 3.863 7 C -0.312 4.312 8 C 0.595 3.405 9 O -0.593 6.593 10 N -0.705 5.705 11 C 0.151 3.849 12 H 0.079 0.921 13 C -0.123 4.123 14 C -0.107 4.107 15 C -0.091 4.091 16 H 0.065 0.935 17 C 0.160 3.840 18 N -0.746 5.746 19 C -0.246 4.246 20 H 0.076 0.924 21 C -0.077 4.077 22 N -0.970 5.970 23 Si 0.973 3.027 24 H -0.277 1.277 25 H -0.296 1.296 26 H -0.278 1.278 27 C -0.105 4.105 28 C 0.092 3.908 29 N -0.320 5.320 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.104 0.896 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.105 0.895 36 H 0.133 0.867 37 H 0.207 0.793 38 H 0.414 0.586 39 H 0.074 0.926 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.046 0.954 43 H 0.021 0.979 44 H 0.025 0.975 45 H 0.373 0.627 46 H 0.250 0.750 47 H 0.085 0.915 48 H 0.093 0.907 49 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.103 -30.612 -9.682 36.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.021 4.021 4 C 0.010 3.990 5 N -0.138 5.138 6 C -0.015 4.015 7 C -0.326 4.326 8 C 0.384 3.616 9 O -0.474 6.474 10 N -0.356 5.356 11 C 0.046 3.954 12 H 0.097 0.903 13 C -0.162 4.162 14 C -0.146 4.146 15 C -0.110 4.110 16 H 0.084 0.916 17 C 0.034 3.966 18 N -0.388 5.388 19 C -0.378 4.378 20 H 0.094 0.906 21 C -0.269 4.269 22 N -0.621 5.621 23 Si 0.802 3.198 24 H -0.203 1.203 25 H -0.223 1.223 26 H -0.204 1.204 27 C -0.143 4.143 28 C -0.096 4.096 29 N -0.140 5.140 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.122 0.878 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.123 0.877 36 H 0.151 0.849 37 H 0.223 0.777 38 H 0.251 0.749 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.039 0.961 44 H 0.042 0.958 45 H 0.205 0.795 46 H 0.059 0.941 47 H 0.104 0.896 48 H 0.112 0.888 49 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -17.555 -31.580 -9.967 37.481 hybrid contribution 0.506 1.923 0.756 2.127 sum -17.049 -29.657 -9.212 35.427 Atomic orbital electron populations 1.22964 0.78726 1.04274 1.00922 1.87752 1.21956 1.27023 1.95676 1.22554 0.92717 0.85265 1.01605 1.21728 0.92431 0.77595 1.07265 1.48492 1.32379 1.12535 1.20365 1.23340 0.89903 0.94109 0.94129 1.20221 1.11255 0.96748 1.04424 1.17502 0.80134 0.81389 0.82593 1.90760 1.51710 1.76784 1.28189 1.45670 1.45882 1.12190 1.31817 1.21652 0.91546 0.89694 0.92542 0.90294 1.22453 1.00347 0.94478 0.98912 1.21999 0.97929 0.96362 0.98272 1.22003 0.98807 0.94141 0.96044 0.91643 1.20851 0.96602 0.87031 0.92134 1.42582 1.80880 1.03439 1.11926 1.19642 1.36303 0.85466 0.96378 0.90583 1.25567 1.03006 1.02193 0.96111 1.69823 1.53525 1.33210 1.05574 0.85213 0.78004 0.79887 0.76672 1.20349 1.22275 1.20370 1.22657 1.02186 0.92755 0.96750 1.24541 0.92291 0.98547 0.94217 1.77155 1.25136 0.97509 1.14180 0.93207 0.93266 0.87807 0.92694 0.92396 0.87680 0.84938 0.77671 0.74866 0.90771 0.92582 0.92465 0.93544 0.96133 0.95756 0.79516 0.94118 0.89616 0.88842 0.76521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 113.37 1.25 1.43 16 2 O -0.41 -4.61 10.70 -148.98 -1.59 -6.21 16 3 C 0.06 0.57 6.11 71.98 0.44 1.01 16 4 C 0.13 1.09 6.86 86.38 0.59 1.68 16 5 N -0.36 -4.80 3.65 -346.30 -1.26 -6.06 16 6 C 0.14 2.00 11.25 84.28 0.95 2.95 16 7 C -0.31 -5.44 6.13 -20.15 -0.12 -5.56 16 8 C 0.59 13.36 7.81 86.66 0.68 14.04 16 9 O -0.59 -18.13 16.58 -4.04 -0.07 -18.20 16 10 N -0.71 -13.01 5.09 -440.70 -2.25 -15.25 16 11 C 0.15 3.45 3.18 46.06 0.15 3.59 16 12 H 0.08 2.10 7.61 -2.39 -0.02 2.08 16 13 C -0.12 -3.18 6.54 31.32 0.20 -2.97 16 14 C -0.11 -3.36 6.05 31.32 0.19 -3.17 16 15 C -0.09 -2.81 2.93 -9.67 -0.03 -2.84 16 16 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 17 C 0.16 6.22 5.58 86.38 0.48 6.70 16 18 N -0.75 -38.18 5.44 -343.45 -1.87 -40.05 16 19 C -0.25 -13.86 9.99 84.04 0.84 -13.02 16 20 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 21 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 22 N -0.97 -60.22 13.06 21.65 0.28 -59.93 16 23 Si 0.97 46.41 29.55 68.60 2.03 48.43 16 24 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 25 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 26 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 27 C -0.11 -2.30 5.95 31.93 0.19 -2.11 16 28 C 0.09 1.29 11.50 85.65 0.99 2.28 16 29 N -0.32 -5.24 12.33 -56.28 -0.69 -5.94 16 30 H 0.05 0.28 8.14 -2.38 -0.02 0.26 16 31 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.13 0.50 8.06 -2.39 -0.02 0.48 16 37 H 0.21 2.15 8.06 -2.91 -0.02 2.12 16 38 H 0.41 4.94 7.50 -92.71 -0.70 4.25 16 39 H 0.07 1.76 8.04 -2.39 -0.02 1.74 16 40 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.06 1.93 7.77 -2.38 -0.02 1.91 16 42 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.02 0.93 8.05 -2.39 -0.02 0.91 16 45 H 0.37 20.47 7.52 -92.71 -0.70 19.78 16 46 H 0.25 15.09 8.31 -92.71 -0.77 14.31 16 47 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.09 1.72 7.94 -2.39 -0.02 1.70 16 49 H 0.22 1.51 7.50 -2.91 -0.02 1.49 16 Total: -1.00 -76.62 407.86 1.40 -75.23 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: -0.44 Total: 27.96 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: 7.26 Total: 0.02 kcal Atomic # 7 Polarization: -121.44 SS G_CDS: -5.79 Total: -127.23 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -1.66 Total: -24.41 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.43 kcal Total: -76.62 1.40 -75.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717884895.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.650 kcal (2) G-P(sol) polarization free energy of solvation -76.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds