Wall clock time and date at job start Tue Mar 31 2020 19:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99882 * 2 1 4 4 C 1.53003 * 109.47061 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47247 * 180.02562 * 4 3 2 6 6 C 1.34259 * 125.75533 * 125.00249 * 5 4 3 7 7 C 1.38041 * 107.41789 * 179.97438 * 6 5 4 8 8 C 1.47431 * 126.41320 * 179.97438 * 7 6 5 9 9 O 1.21597 * 120.00174 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99768 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99784 * 180.02562 * 10 8 7 12 12 H 1.08997 * 110.01993 * 326.39378 * 11 10 8 13 13 C 1.54261 * 110.03258 * 87.83749 * 11 10 8 14 14 C 1.54888 * 104.19672 * 142.89234 * 13 11 10 15 15 C 1.54891 * 102.75120 * 322.06034 * 14 13 11 16 16 H 1.09004 * 110.48613 * 279.26383 * 15 14 13 17 17 C 1.53003 * 110.48809 * 156.61818 * 15 14 13 18 18 N 1.46495 * 109.46866 * 70.22366 * 17 15 14 19 19 C 1.36943 * 119.99814 * 179.97438 * 18 17 15 20 20 H 1.07991 * 120.00002 * 0.02562 * 19 18 17 21 21 C 1.38809 * 119.99877 * 180.02562 * 19 18 17 22 22 N 1.31623 * 120.00444 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99906 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47120 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47049 * 120.00206 * 23 21 19 26 26 H 1.48499 * 109.46943 * 239.99828 * 23 21 19 27 27 C 1.53876 * 110.03274 * 205.00619 * 11 10 8 28 28 C 1.41284 * 107.17043 * 0.24102 * 7 6 5 29 29 N 1.30450 * 108.02498 * 359.58958 * 28 7 6 30 30 H 1.09003 * 109.47116 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47079 * 299.99811 * 1 2 3 32 32 H 1.09002 * 109.47244 * 60.00059 * 1 2 3 33 33 H 1.08997 * 109.47036 * 60.00610 * 3 2 1 34 34 H 1.08996 * 109.47761 * 300.00111 * 3 2 1 35 35 H 1.09006 * 109.47054 * 60.00200 * 4 3 2 36 36 H 1.08994 * 109.47584 * 300.00722 * 4 3 2 37 37 H 1.07999 * 126.28864 * 0.02562 * 6 5 4 38 38 H 0.97000 * 119.99997 * 0.02562 * 10 8 7 39 39 H 1.09000 * 110.48928 * 261.57243 * 13 11 10 40 40 H 1.08999 * 110.48469 * 24.21652 * 13 11 10 41 41 H 1.09005 * 110.75648 * 80.37263 * 14 13 11 42 42 H 1.09004 * 110.75897 * 203.55715 * 14 13 11 43 43 H 1.08998 * 109.46850 * 190.22794 * 17 15 14 44 44 H 1.08993 * 109.47023 * 310.22375 * 17 15 14 45 45 H 0.96998 * 120.00456 * 0.02562 * 18 17 15 46 46 H 0.96993 * 120.00559 * 180.02562 * 22 21 19 47 47 H 1.08995 * 110.03160 * 359.97438 * 27 11 10 48 48 H 1.08998 * 110.03319 * 121.42949 * 27 11 10 49 49 H 1.08007 * 125.99014 * 179.73269 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.1313 2.5229 0.0013 6 6 5.0210 2.9852 0.8942 7 6 5.3269 4.2834 0.5386 8 6 6.2620 5.1847 1.2365 9 8 6.8505 4.8005 2.2287 10 7 6.4652 6.4342 0.7740 11 6 7.3948 7.3296 1.4670 12 1 7.3712 7.1348 2.5392 13 6 8.8248 7.1300 0.9240 14 6 9.4325 8.5546 0.9215 15 6 8.2353 9.4363 0.4874 16 1 8.1108 9.4046 -0.5950 17 6 8.4309 10.8771 0.9635 18 7 9.5131 11.5014 0.1985 19 6 9.8697 12.7993 0.4509 20 1 9.3534 13.3624 1.2141 21 6 10.8948 13.3909 -0.2743 22 7 11.5238 12.7047 -1.2049 23 14 11.3817 15.1611 0.0705 24 1 10.5280 15.7069 1.1560 25 1 12.8056 15.2103 0.4892 26 1 11.1991 15.9732 -1.1593 27 6 7.0199 8.7960 1.1895 28 6 4.5716 4.5888 -0.6156 29 7 3.8697 3.5349 -0.9292 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.8575 0.6436 -0.8892 36 1 3.8568 0.6438 0.8907 37 1 5.4238 2.4409 1.7356 38 1 5.9960 6.7406 -0.0178 39 1 9.3944 6.4734 1.5817 40 1 8.7956 6.7259 -0.0879 41 1 9.7739 8.8308 1.9192 42 1 10.2486 8.6252 0.2024 43 1 7.5086 11.4380 0.8124 44 1 8.6873 10.8781 2.0228 45 1 9.9767 10.9957 -0.4873 46 1 12.2404 13.1180 -1.7113 47 1 6.1467 8.8414 0.5388 48 1 6.8152 9.3129 2.1270 49 1 4.5763 5.5292 -1.1468 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717884896.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:04 Heat of formation + Delta-G solvation = -2.810746 kcal Electronic energy + Delta-G solvation = -27676.516025 eV Core-core repulsion = 23640.347591 eV Total energy + Delta-G solvation = -4036.168434 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.79924 -39.68106 -38.59107 -37.81040 -34.78820 -34.45194 -33.27004 -31.13990 -30.81717 -29.78727 -28.73360 -27.64684 -26.80506 -24.51674 -24.01715 -23.09559 -22.12966 -21.19205 -20.39061 -20.18207 -19.59469 -18.33483 -17.13601 -16.99581 -16.91245 -16.30215 -16.08611 -15.85340 -15.34165 -14.92406 -14.79453 -14.63295 -14.35051 -14.16951 -13.81088 -13.68158 -13.35208 -13.22040 -12.96872 -12.75510 -12.66649 -12.32035 -12.14135 -11.99590 -11.74027 -11.41903 -11.24064 -11.02782 -10.83776 -10.64837 -10.50788 -10.39241 -10.23833 -10.18053 -10.05714 -9.93558 -9.88521 -9.63565 -9.20706 -8.89909 -8.82597 -6.86344 -5.72710 -3.00581 1.15308 1.69703 1.83291 3.11313 3.19685 3.32992 3.45756 3.51434 3.53649 3.96400 4.22328 4.35248 4.37203 4.56238 4.61585 4.70168 4.72590 4.73028 4.83742 4.85976 4.91219 5.00033 5.07142 5.11389 5.13932 5.35081 5.58605 5.60026 5.69251 5.71135 5.72916 5.94641 5.97137 5.98584 6.16576 6.24247 6.28191 6.31002 6.37257 6.41350 6.60085 6.61984 6.67740 6.85821 6.99436 7.08960 7.51174 7.74393 8.22759 8.46702 9.57844 10.17312 10.51858 11.50399 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.035355 B = 0.001510 C = 0.001489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.766791 B =18534.061296 C =18802.649872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.051 3.949 4 C 0.134 3.866 5 N -0.362 5.362 6 C 0.132 3.868 7 C -0.290 4.290 8 C 0.594 3.406 9 O -0.551 6.551 10 N -0.718 5.718 11 C 0.143 3.857 12 H 0.090 0.910 13 C -0.133 4.133 14 C -0.111 4.111 15 C -0.097 4.097 16 H 0.075 0.925 17 C 0.160 3.840 18 N -0.732 5.732 19 C -0.237 4.237 20 H 0.070 0.930 21 C -0.015 4.015 22 N -0.934 5.934 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.122 4.122 28 C 0.085 3.915 29 N -0.297 5.297 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.190 0.810 38 H 0.398 0.602 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.016 0.984 44 H 0.020 0.980 45 H 0.384 0.616 46 H 0.254 0.746 47 H 0.068 0.932 48 H 0.076 0.924 49 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.331 -26.651 2.527 34.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.027 4.027 4 C 0.013 3.987 5 N -0.142 5.142 6 C -0.019 4.019 7 C -0.305 4.305 8 C 0.381 3.619 9 O -0.430 6.430 10 N -0.368 5.368 11 C 0.039 3.961 12 H 0.108 0.892 13 C -0.172 4.172 14 C -0.149 4.149 15 C -0.116 4.116 16 H 0.093 0.907 17 C 0.032 3.968 18 N -0.376 5.376 19 C -0.368 4.368 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.583 5.583 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.161 4.161 28 C -0.103 4.103 29 N -0.116 5.116 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.128 0.872 37 H 0.207 0.793 38 H 0.232 0.768 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.034 0.966 44 H 0.037 0.963 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.086 0.914 48 H 0.095 0.905 49 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -21.734 -27.572 2.500 35.197 hybrid contribution 0.602 1.578 0.014 1.689 sum -21.131 -25.995 2.514 33.594 Atomic orbital electron populations 1.22797 0.79772 1.03227 1.00467 1.87779 1.20720 1.26786 1.95619 1.22643 0.92379 0.85487 1.02179 1.21509 0.92820 0.78573 1.05845 1.48326 1.33062 1.12087 1.20770 1.23011 0.90528 0.94324 0.94035 1.20332 1.10346 0.96416 1.03387 1.17209 0.80347 0.81191 0.83143 1.90771 1.50291 1.75527 1.26423 1.46013 1.46047 1.13244 1.31518 1.21707 0.88409 0.88547 0.97438 0.89173 1.22793 0.95084 0.98174 1.01145 1.22469 0.97685 0.92567 1.02185 1.22148 0.93667 0.95762 0.99974 0.90681 1.20699 0.91699 0.89738 0.94651 1.42358 1.39349 1.12251 1.43630 1.19292 1.13259 0.88833 1.15441 0.91207 1.24724 0.99142 0.98281 0.98932 1.69667 1.26413 1.36195 1.26020 0.86135 0.78031 0.84871 0.77290 1.20585 1.21918 1.21940 1.22435 0.98620 0.93455 1.01589 1.24133 0.93437 0.97824 0.94901 1.77178 1.24440 0.96740 1.13242 0.89074 0.93730 0.93622 0.92537 0.91400 0.88208 0.87209 0.79336 0.76768 0.91526 0.91482 0.91236 0.90958 0.96575 0.96258 0.78277 0.93638 0.91382 0.90534 0.79146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.25 16 2 O -0.39 -2.46 10.70 -35.23 -0.38 -2.84 16 3 C 0.05 0.29 6.11 37.16 0.23 0.51 16 4 C 0.13 0.68 6.86 -4.04 -0.03 0.66 16 5 N -0.36 -2.78 3.65 -60.81 -0.22 -3.00 16 6 C 0.13 1.08 11.25 -16.56 -0.19 0.89 16 7 C -0.29 -2.81 6.13 -105.07 -0.64 -3.45 16 8 C 0.59 7.09 7.81 -12.52 -0.10 6.99 16 9 O -0.55 -8.51 16.55 5.28 0.09 -8.42 16 10 N -0.72 -7.45 5.03 -53.80 -0.27 -7.72 16 11 C 0.14 1.73 3.25 -66.81 -0.22 1.51 16 12 H 0.09 1.20 7.56 -51.93 -0.39 0.81 16 13 C -0.13 -1.75 6.53 -25.08 -0.16 -1.92 16 14 C -0.11 -1.70 6.19 -24.74 -0.15 -1.86 16 15 C -0.10 -1.49 2.89 -88.96 -0.26 -1.75 16 16 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 17 C 0.16 3.17 5.54 -4.04 -0.02 3.15 16 18 N -0.73 -18.53 5.49 -59.92 -0.33 -18.86 16 19 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 20 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 21 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 22 N -0.93 -28.41 13.06 55.49 0.72 -27.68 16 23 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 C -0.12 -1.48 6.14 -25.61 -0.16 -1.64 16 28 C 0.09 0.71 11.50 -16.98 -0.20 0.52 16 29 N -0.30 -2.75 12.33 30.86 0.38 -2.36 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.04 0.15 8.14 -51.93 -0.42 -0.28 16 32 H 0.05 0.16 8.14 -51.93 -0.42 -0.27 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.11 0.33 8.06 -51.93 -0.42 -0.08 16 37 H 0.19 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.40 3.12 7.27 -40.82 -0.30 2.82 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.86 8.05 -51.93 -0.42 0.44 16 41 H 0.07 1.11 7.97 -51.93 -0.41 0.70 16 42 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.02 0.39 8.02 -51.93 -0.42 -0.02 16 45 H 0.38 10.18 7.64 -40.82 -0.31 9.87 16 46 H 0.25 7.45 8.31 -40.82 -0.34 7.12 16 47 H 0.07 0.71 7.62 -51.93 -0.40 0.31 16 48 H 0.08 0.93 7.84 -51.93 -0.41 0.52 16 49 H 0.19 1.02 7.50 -52.48 -0.39 0.63 16 LS Contribution 407.53 15.07 6.14 6.14 Total: -1.00 -35.40 407.53 -7.98 -43.37 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -8.06 Total: 6.34 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -1.03 Total: -2.52 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: 0.28 Total: -59.63 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: -0.29 Total: -11.26 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.40 -7.98 -43.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717884896.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.561 kcal (2) G-P(sol) polarization free energy of solvation -35.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds