Wall clock time and date at job start Tue Mar 31 2020 19:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99882 * 2 1 4 4 C 1.53003 * 109.47061 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47247 * 180.02562 * 4 3 2 6 6 C 1.34259 * 125.75533 * 125.00249 * 5 4 3 7 7 C 1.38041 * 107.41789 * 179.97438 * 6 5 4 8 8 C 1.47431 * 126.41320 * 179.97438 * 7 6 5 9 9 O 1.21597 * 120.00174 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99768 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99784 * 180.02562 * 10 8 7 12 12 H 1.08997 * 110.01993 * 326.39378 * 11 10 8 13 13 C 1.54261 * 110.03258 * 87.83749 * 11 10 8 14 14 C 1.54888 * 104.19672 * 142.89234 * 13 11 10 15 15 C 1.54891 * 102.75120 * 322.06034 * 14 13 11 16 16 H 1.09004 * 110.48613 * 279.26383 * 15 14 13 17 17 C 1.53003 * 110.48809 * 156.61818 * 15 14 13 18 18 N 1.46495 * 109.46866 * 70.22366 * 17 15 14 19 19 C 1.36943 * 119.99814 * 179.97438 * 18 17 15 20 20 H 1.07991 * 120.00002 * 0.02562 * 19 18 17 21 21 C 1.38809 * 119.99877 * 180.02562 * 19 18 17 22 22 N 1.31623 * 120.00444 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99906 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47120 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47049 * 120.00206 * 23 21 19 26 26 H 1.48499 * 109.46943 * 239.99828 * 23 21 19 27 27 C 1.53876 * 110.03274 * 205.00619 * 11 10 8 28 28 C 1.41284 * 107.17043 * 0.24102 * 7 6 5 29 29 N 1.30450 * 108.02498 * 359.58958 * 28 7 6 30 30 H 1.09003 * 109.47116 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47079 * 299.99811 * 1 2 3 32 32 H 1.09002 * 109.47244 * 60.00059 * 1 2 3 33 33 H 1.08997 * 109.47036 * 60.00610 * 3 2 1 34 34 H 1.08996 * 109.47761 * 300.00111 * 3 2 1 35 35 H 1.09006 * 109.47054 * 60.00200 * 4 3 2 36 36 H 1.08994 * 109.47584 * 300.00722 * 4 3 2 37 37 H 1.07999 * 126.28864 * 0.02562 * 6 5 4 38 38 H 0.97000 * 119.99997 * 0.02562 * 10 8 7 39 39 H 1.09000 * 110.48928 * 261.57243 * 13 11 10 40 40 H 1.08999 * 110.48469 * 24.21652 * 13 11 10 41 41 H 1.09005 * 110.75648 * 80.37263 * 14 13 11 42 42 H 1.09004 * 110.75897 * 203.55715 * 14 13 11 43 43 H 1.08998 * 109.46850 * 190.22794 * 17 15 14 44 44 H 1.08993 * 109.47023 * 310.22375 * 17 15 14 45 45 H 0.96998 * 120.00456 * 0.02562 * 18 17 15 46 46 H 0.96993 * 120.00559 * 180.02562 * 22 21 19 47 47 H 1.08995 * 110.03160 * 359.97438 * 27 11 10 48 48 H 1.08998 * 110.03319 * 121.42949 * 27 11 10 49 49 H 1.08007 * 125.99014 * 179.73269 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.1313 2.5229 0.0013 6 6 5.0210 2.9852 0.8942 7 6 5.3269 4.2834 0.5386 8 6 6.2620 5.1847 1.2365 9 8 6.8505 4.8005 2.2287 10 7 6.4652 6.4342 0.7740 11 6 7.3948 7.3296 1.4670 12 1 7.3712 7.1348 2.5392 13 6 8.8248 7.1300 0.9240 14 6 9.4325 8.5546 0.9215 15 6 8.2353 9.4363 0.4874 16 1 8.1108 9.4046 -0.5950 17 6 8.4309 10.8771 0.9635 18 7 9.5131 11.5014 0.1985 19 6 9.8697 12.7993 0.4509 20 1 9.3534 13.3624 1.2141 21 6 10.8948 13.3909 -0.2743 22 7 11.5238 12.7047 -1.2049 23 14 11.3817 15.1611 0.0705 24 1 10.5280 15.7069 1.1560 25 1 12.8056 15.2103 0.4892 26 1 11.1991 15.9732 -1.1593 27 6 7.0199 8.7960 1.1895 28 6 4.5716 4.5888 -0.6156 29 7 3.8697 3.5349 -0.9292 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.8575 0.6436 -0.8892 36 1 3.8568 0.6438 0.8907 37 1 5.4238 2.4409 1.7356 38 1 5.9960 6.7406 -0.0178 39 1 9.3944 6.4734 1.5817 40 1 8.7956 6.7259 -0.0879 41 1 9.7739 8.8308 1.9192 42 1 10.2486 8.6252 0.2024 43 1 7.5086 11.4380 0.8124 44 1 8.6873 10.8781 2.0228 45 1 9.9767 10.9957 -0.4873 46 1 12.2404 13.1180 -1.7113 47 1 6.1467 8.8414 0.5388 48 1 6.8152 9.3129 2.1270 49 1 4.5763 5.5292 -1.1468 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717884896.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:03 Heat of formation + Delta-G solvation = -27.707898 kcal Electronic energy + Delta-G solvation = -27677.595646 eV Core-core repulsion = 23640.347591 eV Total energy + Delta-G solvation = -4037.248055 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.43246 -40.65469 -39.08754 -38.89164 -36.41056 -35.09306 -34.54705 -32.89857 -31.50255 -30.48124 -30.06466 -28.76346 -27.24884 -26.17792 -24.59006 -23.97067 -23.79736 -21.80043 -21.35207 -21.07524 -20.87675 -19.09281 -18.95509 -17.66511 -17.37109 -17.30559 -16.69600 -16.56931 -16.50679 -16.05398 -15.78855 -15.62125 -15.48468 -15.10453 -14.96739 -14.84479 -14.48789 -14.29401 -14.26464 -13.80623 -13.49519 -13.12403 -13.07039 -12.84026 -12.80907 -12.72780 -12.37682 -12.34024 -12.10042 -12.04460 -11.99658 -11.71762 -11.58494 -11.48970 -11.43016 -10.89879 -10.86386 -10.78976 -10.65219 -10.08482 -9.65860 -8.94623 -7.92513 -5.20292 0.49814 1.14315 1.19379 1.48764 1.49401 1.59526 2.34633 2.49404 2.58482 2.72298 3.41268 3.49212 3.64660 3.67315 3.78561 3.84515 3.88278 3.95164 4.11969 4.18332 4.22804 4.29354 4.44097 4.47926 4.48756 4.56523 4.58435 4.61922 4.65664 4.67332 4.73317 4.77656 4.82308 4.83359 4.94644 5.10999 5.15817 5.21770 5.30614 5.38758 5.43327 5.51295 5.60250 5.69819 5.75480 6.01194 6.30572 6.46807 6.70494 7.36561 7.36831 8.15057 8.37700 9.31367 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.035355 B = 0.001510 C = 0.001489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.766791 B =18534.061296 C =18802.649872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.057 3.943 4 C 0.130 3.870 5 N -0.358 5.358 6 C 0.138 3.862 7 C -0.312 4.312 8 C 0.595 3.405 9 O -0.592 6.592 10 N -0.707 5.707 11 C 0.152 3.848 12 H 0.080 0.920 13 C -0.123 4.123 14 C -0.110 4.110 15 C -0.088 4.088 16 H 0.073 0.927 17 C 0.157 3.843 18 N -0.744 5.744 19 C -0.243 4.243 20 H 0.075 0.925 21 C -0.076 4.076 22 N -0.970 5.970 23 Si 0.971 3.029 24 H -0.266 1.266 25 H -0.294 1.294 26 H -0.293 1.293 27 C -0.110 4.110 28 C 0.091 3.909 29 N -0.321 5.321 30 H 0.103 0.897 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.104 0.896 36 H 0.133 0.867 37 H 0.208 0.792 38 H 0.412 0.588 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.051 0.949 43 H 0.022 0.978 44 H 0.018 0.982 45 H 0.374 0.626 46 H 0.250 0.750 47 H 0.094 0.906 48 H 0.080 0.920 49 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.060 -27.190 2.820 35.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.021 4.021 4 C 0.009 3.991 5 N -0.138 5.138 6 C -0.014 4.014 7 C -0.327 4.327 8 C 0.384 3.616 9 O -0.474 6.474 10 N -0.358 5.358 11 C 0.047 3.953 12 H 0.098 0.902 13 C -0.162 4.162 14 C -0.148 4.148 15 C -0.107 4.107 16 H 0.092 0.908 17 C 0.031 3.969 18 N -0.387 5.387 19 C -0.375 4.375 20 H 0.093 0.907 21 C -0.268 4.268 22 N -0.621 5.621 23 Si 0.801 3.199 24 H -0.190 1.190 25 H -0.222 1.222 26 H -0.220 1.220 27 C -0.148 4.148 28 C -0.097 4.097 29 N -0.140 5.140 30 H 0.122 0.878 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.122 0.878 36 H 0.151 0.849 37 H 0.224 0.776 38 H 0.250 0.750 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.040 0.960 44 H 0.036 0.964 45 H 0.206 0.794 46 H 0.059 0.941 47 H 0.112 0.888 48 H 0.099 0.901 49 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -23.531 -28.117 2.787 36.770 hybrid contribution 1.075 1.663 -0.052 1.981 sum -22.456 -26.454 2.736 34.808 Atomic orbital electron populations 1.22966 0.78712 1.04268 1.00936 1.87753 1.21973 1.27034 1.95677 1.22551 0.92661 0.85265 1.01627 1.21731 0.92482 0.77590 1.07249 1.48495 1.32648 1.12504 1.20122 1.23345 0.89883 0.94095 0.94118 1.20236 1.11163 0.96867 1.04402 1.17484 0.80057 0.81475 0.82594 1.90750 1.52018 1.76330 1.28282 1.45856 1.45507 1.12679 1.31755 1.21466 0.88035 0.88841 0.96980 0.90184 1.22687 0.95653 0.96407 1.01451 1.22386 0.97276 0.94237 1.00884 1.22025 0.95340 0.93247 1.00089 0.90847 1.20887 0.90051 0.92063 0.93924 1.42577 1.40528 1.11650 1.43928 1.19698 1.12868 0.90080 1.14897 0.90746 1.25533 0.99644 1.02355 0.99259 1.69819 1.27106 1.37862 1.27293 0.85100 0.77437 0.80130 0.77277 1.19049 1.22174 1.22012 1.22329 0.97746 0.92806 1.01920 1.24528 0.92351 0.98523 0.94299 1.77158 1.25257 0.97393 1.14215 0.87830 0.93116 0.93312 0.92563 0.92458 0.87799 0.84875 0.77582 0.75023 0.92066 0.90899 0.92278 0.93026 0.96049 0.96393 0.79410 0.94091 0.88798 0.90089 0.76693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 113.37 1.25 1.43 16 2 O -0.41 -4.62 10.70 -148.98 -1.59 -6.22 16 3 C 0.06 0.57 6.11 71.98 0.44 1.01 16 4 C 0.13 1.11 6.86 86.38 0.59 1.71 16 5 N -0.36 -4.91 3.65 -346.30 -1.26 -6.17 16 6 C 0.14 2.03 11.25 84.28 0.95 2.98 16 7 C -0.31 -5.54 6.13 -20.15 -0.12 -5.66 16 8 C 0.59 13.39 7.81 86.67 0.68 14.07 16 9 O -0.59 -17.88 16.55 -4.02 -0.07 -17.95 16 10 N -0.71 -13.26 5.03 -442.37 -2.22 -15.49 16 11 C 0.15 3.43 3.25 45.71 0.15 3.58 16 12 H 0.08 2.05 7.56 -2.39 -0.02 2.03 16 13 C -0.12 -3.15 6.53 31.67 0.21 -2.95 16 14 C -0.11 -3.37 6.19 31.89 0.20 -3.18 16 15 C -0.09 -2.64 2.89 -9.72 -0.03 -2.67 16 16 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 17 C 0.16 6.13 5.54 86.38 0.48 6.61 16 18 N -0.74 -37.88 5.49 -343.47 -1.89 -39.77 16 19 C -0.24 -13.72 9.99 84.03 0.84 -12.88 16 20 H 0.07 4.04 7.83 -2.92 -0.02 4.02 16 21 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 22 N -0.97 -59.79 13.06 21.65 0.28 -59.51 16 23 Si 0.97 46.48 29.55 68.60 2.03 48.51 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 25 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 26 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 27 C -0.11 -2.41 6.14 31.32 0.19 -2.21 16 28 C 0.09 1.34 11.50 85.65 0.99 2.32 16 29 N -0.32 -5.43 12.33 -56.27 -0.69 -6.13 16 30 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.13 0.51 8.06 -2.39 -0.02 0.49 16 37 H 0.21 2.14 8.06 -2.91 -0.02 2.12 16 38 H 0.41 5.30 7.27 -92.71 -0.67 4.63 16 39 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.07 1.79 8.05 -2.39 -0.02 1.77 16 41 H 0.06 1.92 7.97 -2.38 -0.02 1.90 16 42 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 43 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.02 0.72 8.02 -2.39 -0.02 0.70 16 45 H 0.37 20.22 7.64 -92.71 -0.71 19.51 16 46 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 47 H 0.09 1.62 7.62 -2.39 -0.02 1.60 16 48 H 0.08 1.77 7.84 -2.39 -0.02 1.75 16 49 H 0.22 1.73 7.50 -2.91 -0.02 1.70 16 Total: -1.00 -76.06 407.53 1.42 -74.64 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: -0.43 Total: 27.85 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 7.27 Total: 0.23 kcal Atomic # 7 Polarization: -121.28 SS G_CDS: -5.79 Total: -127.06 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -1.66 Total: -24.16 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -76.06 1.42 -74.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717884896.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.927 kcal (2) G-P(sol) polarization free energy of solvation -76.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds