Wall clock time and date at job start Tue Mar 31 2020 19:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42894 * 114.00154 * 2 1 4 4 C 1.52998 * 109.47086 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47347 * 180.02562 * 4 3 2 6 6 C 1.34258 * 125.75409 * 125.26998 * 5 4 3 7 7 C 1.38040 * 107.41610 * 180.18711 * 6 5 4 8 8 C 1.47431 * 126.41232 * 179.87440 * 7 6 5 9 9 O 1.21604 * 119.99945 * 359.71193 * 8 7 6 10 10 N 1.34782 * 119.99868 * 179.71048 * 8 7 6 11 11 C 1.46499 * 119.99787 * 179.97438 * 10 8 7 12 12 H 1.08997 * 110.02183 * 326.39281 * 11 10 8 13 13 C 1.53876 * 110.07111 * 87.81378 * 11 10 8 14 14 C 1.54265 * 106.60079 * 119.30485 * 13 11 10 15 15 C 1.54892 * 104.19661 * 23.60737 * 14 13 11 16 16 H 1.09000 * 110.91139 * 80.44466 * 15 14 13 17 17 C 1.52993 * 110.75662 * 203.74296 * 15 14 13 18 18 N 1.46496 * 109.47551 * 288.32826 * 17 15 14 19 19 C 1.36934 * 120.00548 * 179.97438 * 18 17 15 20 20 H 1.08004 * 119.99288 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00389 * 180.02562 * 19 18 17 22 22 N 1.31624 * 120.00257 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00277 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00228 * 23 21 19 26 26 H 1.48499 * 109.46981 * 150.00382 * 23 21 19 27 27 C 1.54267 * 110.03315 * 205.00145 * 11 10 8 28 28 C 1.41286 * 107.17057 * 359.60930 * 7 6 5 29 29 N 1.30446 * 108.02184 * 0.24515 * 28 7 6 30 30 H 1.08997 * 109.46744 * 299.99715 * 1 2 3 31 31 H 1.09000 * 109.46640 * 59.99670 * 1 2 3 32 32 H 1.08989 * 109.47303 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46679 * 60.00382 * 3 2 1 34 34 H 1.08995 * 109.47470 * 300.00345 * 3 2 1 35 35 H 1.08996 * 109.47005 * 60.00637 * 4 3 2 36 36 H 1.08995 * 109.47301 * 300.00513 * 4 3 2 37 37 H 1.08008 * 126.29207 * 0.03706 * 6 5 4 38 38 H 0.96998 * 119.99835 * 0.02562 * 10 8 7 39 39 H 1.09001 * 110.03263 * 238.59002 * 13 11 10 40 40 H 1.09005 * 110.03067 * 359.96857 * 13 11 10 41 41 H 1.09003 * 110.48388 * 264.93308 * 14 13 11 42 42 H 1.09000 * 110.48950 * 142.29261 * 14 13 11 43 43 H 1.09004 * 109.46862 * 168.33025 * 17 15 14 44 44 H 1.09004 * 109.46998 * 48.33502 * 17 15 14 45 45 H 0.96999 * 119.99694 * 0.02562 * 18 17 15 46 46 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 47 47 H 1.08997 * 110.48787 * 98.38000 * 27 11 10 48 48 H 1.09004 * 110.48193 * 335.73757 * 27 11 10 49 49 H 1.08002 * 125.98484 * 180.23961 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 4.1315 2.5229 0.0013 6 6 5.0250 2.9833 0.8913 7 6 5.3258 4.2838 0.5397 8 6 6.2610 5.1850 1.2375 9 8 6.8503 4.8004 2.2292 10 7 6.4629 6.4352 0.7761 11 6 7.3918 7.3309 1.4698 12 1 7.3686 7.1350 2.5417 13 6 8.8187 7.1339 0.9286 14 6 9.2588 8.4910 0.3419 15 6 8.3775 9.5283 1.0811 16 1 8.7807 9.7472 2.0698 17 6 8.2420 10.8101 0.2570 18 7 9.5149 11.5352 0.2689 19 6 9.6343 12.7202 -0.4069 20 1 8.7898 13.1204 -0.9483 21 6 10.8405 13.4070 -0.3960 22 7 10.9551 14.5462 -1.0452 23 14 12.3008 12.7150 0.5411 24 1 12.2818 13.2265 1.9351 25 1 12.2213 11.2322 0.5568 26 1 13.5601 13.1363 -0.1235 27 6 7.0146 8.8009 1.1929 28 6 4.5745 4.5875 -0.6176 29 7 3.8690 3.5352 -0.9284 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0275 -0.0005 33 1 1.6887 1.8462 0.8901 34 1 1.6887 1.8464 -0.8899 35 1 3.8575 0.6436 -0.8891 36 1 3.8568 0.6437 0.8908 37 1 5.4316 2.4374 1.7299 38 1 5.9927 6.7421 -0.0148 39 1 9.4881 6.8424 1.7380 40 1 8.8208 6.3712 0.1499 41 1 9.0672 8.5230 -0.7307 42 1 10.3140 8.6714 0.5473 43 1 7.4621 11.4382 0.6876 44 1 7.9782 10.5559 -0.7696 45 1 10.2734 11.1756 0.7549 46 1 11.7979 15.0263 -1.0372 47 1 6.4319 9.2074 2.0195 48 1 6.4606 8.8829 0.2578 49 1 4.5827 5.5264 -1.1513 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717884897.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:08 Heat of formation + Delta-G solvation = 1.201023 kcal Electronic energy + Delta-G solvation = -27763.001315 eV Core-core repulsion = 23727.006845 eV Total energy + Delta-G solvation = -4035.994470 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.83712 -39.75878 -38.61272 -37.91069 -34.94931 -34.49652 -33.34203 -31.33504 -30.88262 -29.87450 -28.99805 -27.86462 -26.85644 -24.64621 -24.05183 -23.16105 -21.83869 -21.22915 -20.55444 -20.31779 -19.50559 -18.35964 -17.50722 -17.16456 -16.93702 -16.34673 -16.10240 -15.87271 -15.56949 -15.27732 -14.80446 -14.49152 -14.38337 -14.28931 -13.86328 -13.81728 -13.38326 -13.26359 -13.05944 -12.69718 -12.66866 -12.34445 -12.17580 -12.02027 -11.96131 -11.69534 -11.45786 -11.25244 -10.89889 -10.79054 -10.42929 -10.41091 -10.35091 -10.30624 -10.09046 -10.04137 -9.98140 -9.55967 -9.26575 -8.96666 -8.85619 -7.18807 -5.74082 -3.08926 1.11503 1.66552 1.79372 3.09109 3.12960 3.27505 3.40077 3.43174 3.47862 3.93459 4.20009 4.31615 4.33749 4.53695 4.62000 4.62591 4.68392 4.70684 4.71201 4.79461 4.86842 4.97792 4.99724 5.05779 5.10853 5.29878 5.37961 5.51971 5.57012 5.60742 5.64305 5.77777 5.88216 5.93165 5.95029 6.04505 6.12992 6.24933 6.25196 6.38952 6.38984 6.48300 6.57025 6.73799 6.85011 7.05597 7.44764 8.02831 8.16682 8.45330 9.25144 9.97721 10.17976 11.44494 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.033755 B = 0.001596 C = 0.001559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.303490 B =17535.402063 C =17960.024441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.051 3.949 4 C 0.134 3.866 5 N -0.362 5.362 6 C 0.132 3.868 7 C -0.291 4.291 8 C 0.594 3.406 9 O -0.552 6.552 10 N -0.718 5.718 11 C 0.143 3.857 12 H 0.091 0.909 13 C -0.133 4.133 14 C -0.115 4.115 15 C -0.101 4.101 16 H 0.078 0.922 17 C 0.166 3.834 18 N -0.756 5.756 19 C -0.243 4.243 20 H 0.089 0.911 21 C 0.003 3.997 22 N -0.936 5.936 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.277 1.277 26 H -0.291 1.291 27 C -0.120 4.120 28 C 0.085 3.915 29 N -0.296 5.296 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.190 0.810 38 H 0.398 0.602 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.026 0.974 44 H 0.027 0.973 45 H 0.361 0.639 46 H 0.259 0.741 47 H 0.073 0.927 48 H 0.074 0.926 49 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.944 -30.769 3.415 36.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.027 4.027 4 C 0.012 3.988 5 N -0.142 5.142 6 C -0.019 4.019 7 C -0.306 4.306 8 C 0.382 3.618 9 O -0.430 6.430 10 N -0.368 5.368 11 C 0.039 3.961 12 H 0.109 0.891 13 C -0.172 4.172 14 C -0.153 4.153 15 C -0.120 4.120 16 H 0.096 0.904 17 C 0.039 3.961 18 N -0.401 5.401 19 C -0.373 4.373 20 H 0.107 0.893 21 C -0.192 4.192 22 N -0.584 5.584 23 Si 0.714 3.286 24 H -0.211 1.211 25 H -0.203 1.203 26 H -0.218 1.218 27 C -0.159 4.159 28 C -0.103 4.103 29 N -0.115 5.115 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.128 0.872 37 H 0.207 0.793 38 H 0.233 0.767 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.044 0.956 44 H 0.045 0.955 45 H 0.193 0.807 46 H 0.069 0.931 47 H 0.091 0.909 48 H 0.093 0.907 49 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -20.406 -31.666 3.161 37.804 hybrid contribution 1.287 0.369 0.738 1.529 sum -19.118 -31.297 3.898 36.881 Atomic orbital electron populations 1.22797 0.79746 1.03241 1.00478 1.87779 1.20740 1.26770 1.95622 1.22639 0.92344 0.85505 1.02193 1.21512 0.92858 0.78541 1.05843 1.48333 1.32821 1.12095 1.20964 1.23012 0.90523 0.94288 0.94051 1.20316 1.10507 0.96336 1.03396 1.17215 0.80326 0.81183 0.83115 1.90775 1.50260 1.75561 1.26428 1.45977 1.46089 1.13122 1.31631 1.21684 0.88351 0.88646 0.97429 0.89131 1.22590 0.95732 0.98205 1.00695 1.22388 0.99887 0.92907 1.00072 1.22323 0.94280 0.95377 1.00005 0.90376 1.20613 0.89211 0.89879 0.96416 1.42701 1.09428 1.25026 1.62940 1.19072 0.98309 0.95675 1.24224 0.89289 1.24664 0.97471 0.96854 1.00216 1.69707 1.25704 1.16195 1.46781 0.86548 0.83468 0.78558 0.79982 1.21109 1.20271 1.21783 1.22615 0.98108 0.92814 1.02330 1.24136 0.93445 0.97861 0.94835 1.77180 1.24340 0.96810 1.13212 0.93723 0.93609 0.89064 0.92531 0.91386 0.88205 0.87209 0.79342 0.76697 0.91447 0.91604 0.91211 0.91568 0.95602 0.95549 0.80661 0.93119 0.90860 0.90707 0.79115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.24 16 2 O -0.39 -2.39 10.70 -35.23 -0.38 -2.77 16 3 C 0.05 0.28 6.11 37.16 0.23 0.50 16 4 C 0.13 0.65 6.86 -4.04 -0.03 0.62 16 5 N -0.36 -2.67 3.65 -60.81 -0.22 -2.89 16 6 C 0.13 1.04 11.25 -16.56 -0.19 0.85 16 7 C -0.29 -2.69 6.13 -105.07 -0.64 -3.34 16 8 C 0.59 6.78 7.81 -12.51 -0.10 6.68 16 9 O -0.55 -8.22 16.55 5.27 0.09 -8.14 16 10 N -0.72 -7.00 4.98 -53.79 -0.27 -7.27 16 11 C 0.14 1.62 3.24 -66.81 -0.22 1.40 16 12 H 0.09 1.14 7.56 -51.93 -0.39 0.74 16 13 C -0.13 -1.63 6.59 -25.61 -0.17 -1.80 16 14 C -0.11 -1.61 6.20 -25.07 -0.16 -1.76 16 15 C -0.10 -1.46 2.91 -88.63 -0.26 -1.72 16 16 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 17 C 0.17 3.10 5.70 -4.05 -0.02 3.08 16 18 N -0.76 -17.89 5.33 -59.91 -0.32 -18.21 16 19 C -0.24 -6.92 10.47 -15.06 -0.16 -7.07 16 20 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 21 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 22 N -0.94 -29.59 13.97 55.49 0.78 -28.82 16 23 Si 0.88 22.28 27.74 -169.99 -4.71 17.57 16 24 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 26 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 27 C -0.12 -1.35 5.97 -25.07 -0.15 -1.50 16 28 C 0.09 0.68 11.50 -16.98 -0.20 0.49 16 29 N -0.30 -2.65 12.33 30.86 0.38 -2.27 16 30 H 0.04 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.05 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.09 0.23 8.14 -51.94 -0.42 -0.19 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.11 0.31 8.06 -51.93 -0.42 -0.11 16 37 H 0.19 1.09 8.06 -52.48 -0.42 0.66 16 38 H 0.40 2.88 7.31 -40.82 -0.30 2.58 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.80 7.92 -51.93 -0.41 0.39 16 41 H 0.07 1.00 7.93 -51.93 -0.41 0.59 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.03 0.50 7.99 -51.93 -0.41 0.08 16 45 H 0.36 8.37 5.53 -40.82 -0.23 8.14 16 46 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 47 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.07 0.76 7.64 -51.93 -0.40 0.36 16 49 H 0.19 0.95 7.50 -52.49 -0.39 0.55 16 LS Contribution 404.68 15.07 6.10 6.10 Total: -1.00 -36.26 404.68 -7.62 -43.89 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -8.03 Total: 5.14 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -1.04 Total: -2.32 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: 0.35 Total: -59.46 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: -0.29 Total: -10.91 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.71 Total: 17.57 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.26 -7.62 -43.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717884897.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.088 kcal (2) G-P(sol) polarization free energy of solvation -36.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds