Wall clock time and date at job start Tue Mar 31 2020 19:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42894 * 114.00154 * 2 1 4 4 C 1.52998 * 109.47086 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47347 * 180.02562 * 4 3 2 6 6 C 1.34258 * 125.75409 * 125.26998 * 5 4 3 7 7 C 1.38040 * 107.41610 * 180.18711 * 6 5 4 8 8 C 1.47431 * 126.41232 * 179.87440 * 7 6 5 9 9 O 1.21604 * 119.99945 * 359.71193 * 8 7 6 10 10 N 1.34782 * 119.99868 * 179.71048 * 8 7 6 11 11 C 1.46499 * 119.99787 * 179.97438 * 10 8 7 12 12 H 1.08997 * 110.02183 * 326.39281 * 11 10 8 13 13 C 1.53876 * 110.07111 * 87.81378 * 11 10 8 14 14 C 1.54265 * 106.60079 * 119.30485 * 13 11 10 15 15 C 1.54892 * 104.19661 * 23.60737 * 14 13 11 16 16 H 1.09000 * 110.91139 * 80.44466 * 15 14 13 17 17 C 1.52993 * 110.75662 * 203.74296 * 15 14 13 18 18 N 1.46496 * 109.47551 * 288.32826 * 17 15 14 19 19 C 1.36934 * 120.00548 * 179.97438 * 18 17 15 20 20 H 1.08004 * 119.99288 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00389 * 180.02562 * 19 18 17 22 22 N 1.31624 * 120.00257 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00277 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00228 * 23 21 19 26 26 H 1.48499 * 109.46981 * 150.00382 * 23 21 19 27 27 C 1.54267 * 110.03315 * 205.00145 * 11 10 8 28 28 C 1.41286 * 107.17057 * 359.60930 * 7 6 5 29 29 N 1.30446 * 108.02184 * 0.24515 * 28 7 6 30 30 H 1.08997 * 109.46744 * 299.99715 * 1 2 3 31 31 H 1.09000 * 109.46640 * 59.99670 * 1 2 3 32 32 H 1.08989 * 109.47303 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46679 * 60.00382 * 3 2 1 34 34 H 1.08995 * 109.47470 * 300.00345 * 3 2 1 35 35 H 1.08996 * 109.47005 * 60.00637 * 4 3 2 36 36 H 1.08995 * 109.47301 * 300.00513 * 4 3 2 37 37 H 1.08008 * 126.29207 * 0.03706 * 6 5 4 38 38 H 0.96998 * 119.99835 * 0.02562 * 10 8 7 39 39 H 1.09001 * 110.03263 * 238.59002 * 13 11 10 40 40 H 1.09005 * 110.03067 * 359.96857 * 13 11 10 41 41 H 1.09003 * 110.48388 * 264.93308 * 14 13 11 42 42 H 1.09000 * 110.48950 * 142.29261 * 14 13 11 43 43 H 1.09004 * 109.46862 * 168.33025 * 17 15 14 44 44 H 1.09004 * 109.46998 * 48.33502 * 17 15 14 45 45 H 0.96999 * 119.99694 * 0.02562 * 18 17 15 46 46 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 47 47 H 1.08997 * 110.48787 * 98.38000 * 27 11 10 48 48 H 1.09004 * 110.48193 * 335.73757 * 27 11 10 49 49 H 1.08002 * 125.98484 * 180.23961 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 4.1315 2.5229 0.0013 6 6 5.0250 2.9833 0.8913 7 6 5.3258 4.2838 0.5397 8 6 6.2610 5.1850 1.2375 9 8 6.8503 4.8004 2.2292 10 7 6.4629 6.4352 0.7761 11 6 7.3918 7.3309 1.4698 12 1 7.3686 7.1350 2.5417 13 6 8.8187 7.1339 0.9286 14 6 9.2588 8.4910 0.3419 15 6 8.3775 9.5283 1.0811 16 1 8.7807 9.7472 2.0698 17 6 8.2420 10.8101 0.2570 18 7 9.5149 11.5352 0.2689 19 6 9.6343 12.7202 -0.4069 20 1 8.7898 13.1204 -0.9483 21 6 10.8405 13.4070 -0.3960 22 7 10.9551 14.5462 -1.0452 23 14 12.3008 12.7150 0.5411 24 1 12.2818 13.2265 1.9351 25 1 12.2213 11.2322 0.5568 26 1 13.5601 13.1363 -0.1235 27 6 7.0146 8.8009 1.1929 28 6 4.5745 4.5875 -0.6176 29 7 3.8690 3.5352 -0.9284 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0275 -0.0005 33 1 1.6887 1.8462 0.8901 34 1 1.6887 1.8464 -0.8899 35 1 3.8575 0.6436 -0.8891 36 1 3.8568 0.6437 0.8908 37 1 5.4316 2.4374 1.7299 38 1 5.9927 6.7421 -0.0148 39 1 9.4881 6.8424 1.7380 40 1 8.8208 6.3712 0.1499 41 1 9.0672 8.5230 -0.7307 42 1 10.3140 8.6714 0.5473 43 1 7.4621 11.4382 0.6876 44 1 7.9782 10.5559 -0.7696 45 1 10.2734 11.1756 0.7549 46 1 11.7979 15.0263 -1.0372 47 1 6.4319 9.2074 2.0195 48 1 6.4606 8.8829 0.2578 49 1 4.5827 5.5264 -1.1513 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717884897.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:07 Heat of formation + Delta-G solvation = -24.910395 kcal Electronic energy + Delta-G solvation = -27764.133591 eV Core-core repulsion = 23727.006845 eV Total energy + Delta-G solvation = -4037.126746 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.43840 -40.66657 -39.10342 -38.90825 -36.54844 -35.09941 -34.55861 -33.22207 -31.52267 -30.60637 -30.17464 -28.88447 -27.26535 -26.15236 -24.58520 -23.91898 -23.64264 -21.80858 -21.52017 -21.20579 -20.61298 -19.52121 -18.97305 -17.66806 -17.36655 -17.34802 -16.69597 -16.58847 -16.49862 -16.33666 -15.91519 -15.66498 -15.48342 -15.01373 -14.95309 -14.85963 -14.55098 -14.31254 -14.13009 -13.84151 -13.67679 -13.50661 -13.08160 -12.87932 -12.75820 -12.70518 -12.54149 -12.36344 -12.12682 -12.00149 -11.92488 -11.78547 -11.63068 -11.51384 -11.41617 -10.92377 -10.88280 -10.79543 -10.65800 -10.09922 -9.66611 -9.24903 -8.00777 -5.33145 0.49323 1.14259 1.18500 1.39489 1.42335 1.49782 2.33384 2.48659 2.50305 2.71810 3.30983 3.48259 3.56147 3.62812 3.77876 3.83986 3.84954 3.89079 4.04719 4.11780 4.17772 4.28837 4.43639 4.44711 4.47566 4.54405 4.56250 4.61399 4.61941 4.66777 4.68156 4.76090 4.79054 4.82051 4.96851 5.07658 5.17890 5.20510 5.25821 5.37434 5.39746 5.55542 5.69612 5.74961 5.78808 6.00675 6.23841 6.46490 6.69553 7.11230 7.35663 7.88965 8.07273 9.20911 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.033755 B = 0.001596 C = 0.001559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.303490 B =17535.402063 C =17960.024441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.056 3.944 4 C 0.130 3.870 5 N -0.359 5.359 6 C 0.137 3.863 7 C -0.312 4.312 8 C 0.595 3.405 9 O -0.592 6.592 10 N -0.707 5.707 11 C 0.150 3.850 12 H 0.081 0.919 13 C -0.125 4.125 14 C -0.112 4.112 15 C -0.095 4.095 16 H 0.076 0.924 17 C 0.162 3.838 18 N -0.759 5.759 19 C -0.233 4.233 20 H 0.057 0.943 21 C -0.064 4.064 22 N -0.985 5.985 23 Si 0.953 3.047 24 H -0.279 1.279 25 H -0.251 1.251 26 H -0.296 1.296 27 C -0.108 4.108 28 C 0.091 3.909 29 N -0.321 5.321 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.103 0.897 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.104 0.896 36 H 0.133 0.867 37 H 0.208 0.792 38 H 0.412 0.588 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.025 0.975 44 H 0.028 0.972 45 H 0.365 0.635 46 H 0.257 0.743 47 H 0.084 0.916 48 H 0.090 0.910 49 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.566 -33.077 4.202 39.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.021 4.021 4 C 0.010 3.990 5 N -0.138 5.138 6 C -0.015 4.015 7 C -0.327 4.327 8 C 0.384 3.616 9 O -0.474 6.474 10 N -0.358 5.358 11 C 0.045 3.955 12 H 0.099 0.901 13 C -0.164 4.164 14 C -0.150 4.150 15 C -0.114 4.114 16 H 0.095 0.905 17 C 0.037 3.963 18 N -0.404 5.404 19 C -0.364 4.364 20 H 0.075 0.925 21 C -0.255 4.255 22 N -0.636 5.636 23 Si 0.780 3.220 24 H -0.205 1.205 25 H -0.176 1.176 26 H -0.223 1.223 27 C -0.147 4.147 28 C -0.097 4.097 29 N -0.141 5.141 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.122 0.878 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.122 0.878 36 H 0.151 0.849 37 H 0.224 0.776 38 H 0.250 0.750 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.043 0.957 44 H 0.046 0.954 45 H 0.198 0.802 46 H 0.066 0.934 47 H 0.103 0.897 48 H 0.109 0.891 49 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -21.092 -34.018 3.928 40.219 hybrid contribution 1.337 1.057 0.439 1.760 sum -19.754 -32.962 4.367 38.675 Atomic orbital electron populations 1.22965 0.78709 1.04272 1.00934 1.87753 1.21971 1.27035 1.95678 1.22550 0.92677 0.85266 1.01619 1.21727 0.92470 0.77598 1.07239 1.48497 1.32446 1.12496 1.20349 1.23350 0.89893 0.94092 0.94126 1.20240 1.11297 0.96787 1.04354 1.17466 0.80028 0.81496 0.82569 1.90753 1.51972 1.76370 1.28257 1.45834 1.45603 1.12546 1.31833 1.21483 0.88130 0.88864 0.96988 0.90117 1.22500 0.96249 0.97102 1.00528 1.22335 0.99039 0.93726 0.99903 1.22211 0.96601 0.93604 0.99016 0.90513 1.20803 0.86941 0.91295 0.97296 1.42739 1.11452 1.23931 1.62287 1.19077 0.97185 0.96967 1.23206 0.92498 1.25487 1.00771 0.97376 1.01907 1.69888 1.26466 1.18101 1.49140 0.85432 0.78975 0.79240 0.78310 1.20498 1.17554 1.22321 1.22528 0.96356 0.92067 1.03705 1.24530 0.92379 0.98526 0.94280 1.77159 1.25191 0.97492 1.14222 0.93119 0.93318 0.87826 0.92576 0.92472 0.87808 0.84873 0.77577 0.75048 0.91772 0.91352 0.91507 0.92863 0.95692 0.95428 0.80180 0.93417 0.89731 0.89135 0.76701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 113.37 1.25 1.42 16 2 O -0.41 -4.49 10.70 -148.98 -1.59 -6.08 16 3 C 0.06 0.55 6.11 71.98 0.44 0.99 16 4 C 0.13 1.05 6.86 86.38 0.59 1.64 16 5 N -0.36 -4.69 3.65 -346.30 -1.26 -5.96 16 6 C 0.14 1.92 11.25 84.27 0.95 2.86 16 7 C -0.31 -5.25 6.13 -20.15 -0.12 -5.37 16 8 C 0.60 12.63 7.81 86.66 0.68 13.30 16 9 O -0.59 -17.03 16.55 -4.04 -0.07 -17.09 16 10 N -0.71 -12.21 4.98 -442.35 -2.20 -14.41 16 11 C 0.15 3.06 3.24 45.72 0.15 3.21 16 12 H 0.08 1.88 7.56 -2.39 -0.02 1.86 16 13 C -0.13 -2.82 6.59 31.32 0.21 -2.61 16 14 C -0.11 -2.94 6.20 31.67 0.20 -2.74 16 15 C -0.10 -2.56 2.91 -9.50 -0.03 -2.59 16 16 H 0.08 2.12 8.14 -2.39 -0.02 2.11 16 17 C 0.16 5.85 5.70 86.38 0.49 6.34 16 18 N -0.76 -35.17 5.33 -343.47 -1.83 -37.00 16 19 C -0.23 -13.38 10.47 84.03 0.88 -12.50 16 20 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 21 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 22 N -0.99 -63.62 13.97 21.65 0.30 -63.32 16 23 Si 0.95 45.82 27.74 68.60 1.90 47.72 16 24 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 25 H -0.25 -10.87 6.52 99.48 0.65 -10.22 16 26 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 27 C -0.11 -2.13 5.97 31.67 0.19 -1.94 16 28 C 0.09 1.27 11.50 85.65 0.99 2.26 16 29 N -0.32 -5.25 12.33 -56.28 -0.69 -5.95 16 30 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.13 0.44 8.06 -2.39 -0.02 0.42 16 37 H 0.21 1.97 8.06 -2.91 -0.02 1.95 16 38 H 0.41 4.80 7.31 -92.71 -0.68 4.12 16 39 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 40 H 0.07 1.52 7.92 -2.38 -0.02 1.50 16 41 H 0.07 1.79 7.93 -2.39 -0.02 1.77 16 42 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 44 H 0.03 1.00 7.99 -2.39 -0.02 0.98 16 45 H 0.37 16.24 5.53 -92.71 -0.51 15.73 16 46 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 47 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.09 1.53 7.64 -2.38 -0.02 1.51 16 49 H 0.22 1.57 7.50 -2.91 -0.02 1.55 16 Total: -1.00 -78.77 404.68 1.58 -77.19 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: -0.29 Total: 23.97 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: 7.32 Total: 0.93 kcal Atomic # 7 Polarization: -120.95 SS G_CDS: -5.69 Total: -126.63 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -1.66 Total: -23.18 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.90 Total: 47.72 kcal Total: -78.77 1.58 -77.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717884897.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.282 kcal (2) G-P(sol) polarization free energy of solvation -78.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds