Wall clock time and date at job start Tue Mar 31 2020 19:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 114.00099 * 2 1 4 4 C 1.53000 * 109.46986 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47000 * 179.97438 * 4 3 2 6 6 C 1.34258 * 125.75338 * 125.00318 * 5 4 3 7 7 C 1.38048 * 107.41898 * 179.97438 * 6 5 4 8 8 C 1.47430 * 126.41483 * 179.97438 * 7 6 5 9 9 O 1.21603 * 120.00081 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99963 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27989 * 10 8 7 12 12 H 1.09002 * 110.01961 * 34.01779 * 11 10 8 13 13 C 1.53875 * 110.03230 * 272.62860 * 11 10 8 14 14 C 1.54261 * 106.59843 * 240.71712 * 13 11 10 15 15 C 1.54888 * 104.19590 * 23.60973 * 14 13 11 16 16 H 1.09001 * 110.75655 * 80.37413 * 15 14 13 17 17 C 1.53004 * 110.75454 * 203.55626 * 15 14 13 18 18 N 1.46503 * 109.47270 * 293.54447 * 17 15 14 19 19 C 1.36938 * 119.99971 * 179.97438 * 18 17 15 20 20 H 1.08005 * 119.99718 * 0.02562 * 19 18 17 21 21 C 1.38811 * 119.99734 * 180.02562 * 19 18 17 22 22 N 1.31627 * 119.99626 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00441 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.46895 * 89.99634 * 23 21 19 25 25 H 1.48493 * 109.47479 * 210.00079 * 23 21 19 26 26 H 1.48500 * 109.46795 * 330.00266 * 23 21 19 27 27 C 1.54262 * 110.03143 * 155.41364 * 11 10 8 28 28 C 1.41282 * 107.17080 * 0.24198 * 7 6 5 29 29 N 1.30457 * 108.02289 * 359.59087 * 28 7 6 30 30 H 1.08998 * 109.46513 * 300.00055 * 1 2 3 31 31 H 1.09004 * 109.46949 * 59.99792 * 1 2 3 32 32 H 1.09001 * 109.47102 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47327 * 60.00519 * 3 2 1 34 34 H 1.09002 * 109.47280 * 300.00117 * 3 2 1 35 35 H 1.09009 * 109.46987 * 60.00105 * 4 3 2 36 36 H 1.08991 * 109.47492 * 300.00511 * 4 3 2 37 37 H 1.08002 * 126.29174 * 359.97438 * 6 5 4 38 38 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 39 39 H 1.09001 * 110.03148 * 0.02562 * 13 11 10 40 40 H 1.09001 * 110.03463 * 121.37972 * 13 11 10 41 41 H 1.09010 * 110.48583 * 142.28477 * 14 13 11 42 42 H 1.08992 * 110.48973 * 264.79449 * 14 13 11 43 43 H 1.09000 * 109.47080 * 53.54676 * 17 15 14 44 44 H 1.08999 * 109.46873 * 173.54682 * 17 15 14 45 45 H 0.96997 * 119.99625 * 0.02562 * 18 17 15 46 46 H 0.97001 * 119.99610 * 179.97438 * 22 21 19 47 47 H 1.09005 * 110.48949 * 214.35025 * 27 11 10 48 48 H 1.09002 * 110.48716 * 336.98837 * 27 11 10 49 49 H 1.07998 * 125.99190 * 179.73259 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 4.1314 2.5228 -0.0013 6 6 5.0218 2.9855 0.8907 7 6 5.3276 4.2836 0.5342 8 6 6.2632 5.1852 1.2307 9 8 6.8527 4.8014 2.2227 10 7 6.4653 6.4349 0.7680 11 6 7.3997 7.3287 1.4566 12 1 8.2302 6.7551 1.8681 13 6 6.6729 8.0853 2.5822 14 6 6.7848 9.5870 2.2475 15 6 7.0065 9.6191 0.7149 16 1 6.0613 9.4990 0.1853 17 6 7.7002 10.9163 0.2944 18 7 6.8037 12.0498 0.5350 19 6 7.2118 13.3216 0.2334 20 1 8.1945 13.4891 -0.1823 21 6 6.3625 14.3956 0.4618 22 7 6.7546 15.6180 0.1714 23 14 4.6631 14.1060 1.1813 24 1 4.7359 14.1681 2.6633 25 1 3.7316 15.1514 0.6872 26 1 4.1711 12.7679 0.7656 27 6 7.9289 8.3963 0.4769 28 6 4.5712 4.5885 -0.6195 29 7 3.8689 3.5344 -0.9319 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6888 1.8463 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.8567 0.6437 -0.8909 36 1 3.8575 0.6434 0.8890 37 1 5.4249 2.4420 1.7325 38 1 5.9954 6.7409 -0.0235 39 1 5.6250 7.7871 2.6164 40 1 7.1506 7.8788 3.5399 41 1 5.8631 10.1062 2.5106 42 1 7.6335 10.0315 2.7671 43 1 8.6130 11.0452 0.8760 44 1 7.9487 10.8683 -0.7658 45 1 5.9213 11.8993 0.9086 46 1 6.1610 16.3685 0.3307 47 1 8.9638 8.6478 0.7091 48 1 7.8421 8.0465 -0.5519 49 1 4.5755 5.5285 -1.1512 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717884898.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:12 Heat of formation + Delta-G solvation = 1.201647 kcal Electronic energy + Delta-G solvation = -27982.609229 eV Core-core repulsion = 23946.614786 eV Total energy + Delta-G solvation = -4035.994443 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.81933 -39.77925 -38.59416 -37.89666 -34.92414 -34.48106 -33.26364 -31.34242 -30.86334 -29.84646 -29.02539 -27.87695 -26.84131 -24.63949 -24.05265 -23.19213 -21.87336 -21.21376 -20.43673 -20.04457 -19.80949 -18.37482 -17.53558 -17.14488 -16.91879 -16.32766 -16.10002 -15.87404 -15.35274 -15.13713 -14.78240 -14.59549 -14.40969 -14.28306 -14.06671 -13.69697 -13.36748 -13.25138 -13.20857 -12.68677 -12.59838 -12.32621 -12.29233 -11.99482 -11.84972 -11.62664 -11.43204 -11.13093 -10.93004 -10.81580 -10.50399 -10.39085 -10.37262 -10.30999 -10.07288 -10.02093 -9.97226 -9.56557 -9.25627 -8.95909 -8.86467 -7.19352 -5.74679 -3.09404 1.12946 1.68177 1.81447 3.10754 3.15054 3.28912 3.38223 3.41083 3.46240 3.95097 4.21923 4.33092 4.35835 4.55276 4.60874 4.62819 4.67886 4.70599 4.73332 4.80810 4.88553 4.99511 4.99635 5.07722 5.12618 5.31985 5.40193 5.50896 5.57495 5.60742 5.66966 5.79866 5.85202 5.93391 5.97494 6.04815 6.10250 6.23542 6.26943 6.40745 6.40810 6.48677 6.58747 6.72651 6.85253 7.07400 7.46563 8.02540 8.17961 8.44792 9.24563 9.97062 10.17367 11.43943 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016021 B = 0.001877 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.330750 B =14914.606648 C =15976.250691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.050 3.950 4 C 0.134 3.866 5 N -0.362 5.362 6 C 0.132 3.868 7 C -0.291 4.291 8 C 0.595 3.405 9 O -0.552 6.552 10 N -0.717 5.717 11 C 0.143 3.857 12 H 0.089 0.911 13 C -0.133 4.133 14 C -0.116 4.116 15 C -0.102 4.102 16 H 0.073 0.927 17 C 0.165 3.835 18 N -0.755 5.755 19 C -0.242 4.242 20 H 0.090 0.910 21 C 0.003 3.997 22 N -0.935 5.935 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.278 1.278 27 C -0.123 4.123 28 C 0.086 3.914 29 N -0.296 5.296 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.190 0.810 38 H 0.399 0.601 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.028 0.972 44 H 0.025 0.975 45 H 0.360 0.640 46 H 0.259 0.741 47 H 0.084 0.916 48 H 0.072 0.928 49 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.358 -33.685 0.201 34.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.027 4.027 4 C 0.013 3.987 5 N -0.142 5.142 6 C -0.019 4.019 7 C -0.306 4.306 8 C 0.382 3.618 9 O -0.431 6.431 10 N -0.368 5.368 11 C 0.039 3.961 12 H 0.108 0.892 13 C -0.171 4.171 14 C -0.153 4.153 15 C -0.121 4.121 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.401 5.401 19 C -0.372 4.372 20 H 0.107 0.893 21 C -0.193 4.193 22 N -0.584 5.584 23 Si 0.715 3.285 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.204 1.204 27 C -0.161 4.161 28 C -0.103 4.103 29 N -0.115 5.115 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.128 0.872 37 H 0.207 0.793 38 H 0.233 0.767 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.046 0.954 44 H 0.043 0.957 45 H 0.193 0.807 46 H 0.069 0.931 47 H 0.102 0.898 48 H 0.091 0.909 49 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -8.597 -34.587 0.007 35.640 hybrid contribution -1.212 0.743 0.671 1.573 sum -9.810 -33.844 0.678 35.243 Atomic orbital electron populations 1.22800 0.79740 1.03229 1.00502 1.87775 1.20746 1.26770 1.95627 1.22647 0.92352 0.85505 1.02224 1.21509 0.92857 0.78544 1.05818 1.48338 1.32966 1.12115 1.20808 1.23007 0.90537 0.94323 0.94025 1.20315 1.10406 0.96397 1.03435 1.17201 0.80447 0.81008 0.83124 1.90769 1.50087 1.75952 1.26292 1.45958 1.45957 1.13051 1.31797 1.21637 0.91550 0.90204 0.92690 0.89242 1.22600 1.00709 0.95594 0.98237 1.22379 1.02424 0.94659 0.95870 1.22394 0.98763 0.94887 0.96054 0.90812 1.20620 0.92928 0.85046 0.97653 1.42696 1.15767 1.03312 1.78299 1.19083 1.01119 0.81847 1.35178 0.89263 1.24671 0.98013 0.95135 1.01449 1.69708 1.36623 0.97807 1.54221 0.86547 0.85730 0.76994 0.79262 1.21090 1.21801 1.20384 1.22680 1.00400 0.94284 0.98734 1.24145 0.93383 0.97814 0.94922 1.77193 1.24318 0.96760 1.13244 0.93721 0.93598 0.89063 0.92513 0.91386 0.88209 0.87212 0.79346 0.76680 0.91648 0.91394 0.91744 0.90958 0.95410 0.95675 0.80701 0.93125 0.89781 0.90921 0.79129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.39 -2.52 10.70 -35.23 -0.38 -2.90 16 3 C 0.05 0.29 6.11 37.16 0.23 0.52 16 4 C 0.13 0.69 6.86 -4.04 -0.03 0.66 16 5 N -0.36 -2.78 3.65 -60.81 -0.22 -3.00 16 6 C 0.13 1.07 11.25 -16.56 -0.19 0.88 16 7 C -0.29 -2.78 6.13 -105.07 -0.64 -3.43 16 8 C 0.59 6.90 7.81 -12.52 -0.10 6.80 16 9 O -0.55 -8.24 16.56 5.27 0.09 -8.15 16 10 N -0.72 -7.20 4.93 -53.80 -0.27 -7.47 16 11 C 0.14 1.61 3.23 -66.82 -0.22 1.39 16 12 H 0.09 1.09 7.58 -51.93 -0.39 0.69 16 13 C -0.13 -1.62 6.59 -25.62 -0.17 -1.79 16 14 C -0.12 -1.62 5.96 -25.08 -0.15 -1.77 16 15 C -0.10 -1.44 2.96 -88.56 -0.26 -1.70 16 16 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 17 C 0.16 3.06 5.71 -4.04 -0.02 3.04 16 18 N -0.76 -17.75 5.25 -59.90 -0.31 -18.07 16 19 C -0.24 -6.88 10.47 -15.06 -0.16 -7.04 16 20 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 21 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 22 N -0.94 -29.54 13.97 55.49 0.78 -28.76 16 23 Si 0.88 22.18 27.74 -169.99 -4.71 17.47 16 24 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 26 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 27 C -0.12 -1.36 5.89 -25.01 -0.15 -1.51 16 28 C 0.09 0.72 11.50 -16.98 -0.20 0.53 16 29 N -0.30 -2.77 12.33 30.86 0.38 -2.39 16 30 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.10 0.47 8.14 -51.92 -0.42 0.05 16 36 H 0.11 0.33 8.06 -51.93 -0.42 -0.09 16 37 H 0.19 1.12 8.06 -52.49 -0.42 0.69 16 38 H 0.40 3.15 7.52 -40.82 -0.31 2.84 16 39 H 0.06 0.82 7.92 -51.93 -0.41 0.40 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.97 8.14 -51.92 -0.42 0.54 16 42 H 0.07 1.06 8.02 -51.93 -0.42 0.64 16 43 H 0.03 0.53 8.10 -51.93 -0.42 0.11 16 44 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.36 8.27 5.39 -40.82 -0.22 8.05 16 46 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 47 H 0.08 0.92 8.06 -51.93 -0.42 0.50 16 48 H 0.07 0.71 7.98 -51.93 -0.41 0.30 16 49 H 0.19 1.08 7.50 -52.49 -0.39 0.69 16 LS Contribution 404.83 15.07 6.10 6.10 Total: -1.00 -36.08 404.83 -7.64 -43.71 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -8.06 Total: 5.63 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -1.03 Total: -2.17 kcal Atomic # 7 Polarization: -60.05 SS G_CDS: 0.35 Total: -59.69 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -0.29 Total: -11.05 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.47 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.08 -7.64 -43.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717884898.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.913 kcal (2) G-P(sol) polarization free energy of solvation -36.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds