Wall clock time and date at job start Tue Mar 31 2020 19:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 114.00099 * 2 1 4 4 C 1.53000 * 109.46986 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47000 * 179.97438 * 4 3 2 6 6 C 1.34258 * 125.75338 * 125.00318 * 5 4 3 7 7 C 1.38048 * 107.41898 * 179.97438 * 6 5 4 8 8 C 1.47430 * 126.41483 * 179.97438 * 7 6 5 9 9 O 1.21603 * 120.00081 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99963 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27989 * 10 8 7 12 12 H 1.09002 * 110.01961 * 34.01779 * 11 10 8 13 13 C 1.53875 * 110.03230 * 272.62860 * 11 10 8 14 14 C 1.54261 * 106.59843 * 240.71712 * 13 11 10 15 15 C 1.54888 * 104.19590 * 23.60973 * 14 13 11 16 16 H 1.09001 * 110.75655 * 80.37413 * 15 14 13 17 17 C 1.53004 * 110.75454 * 203.55626 * 15 14 13 18 18 N 1.46503 * 109.47270 * 293.54447 * 17 15 14 19 19 C 1.36938 * 119.99971 * 179.97438 * 18 17 15 20 20 H 1.08005 * 119.99718 * 0.02562 * 19 18 17 21 21 C 1.38811 * 119.99734 * 180.02562 * 19 18 17 22 22 N 1.31627 * 119.99626 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00441 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.46895 * 89.99634 * 23 21 19 25 25 H 1.48493 * 109.47479 * 210.00079 * 23 21 19 26 26 H 1.48500 * 109.46795 * 330.00266 * 23 21 19 27 27 C 1.54262 * 110.03143 * 155.41364 * 11 10 8 28 28 C 1.41282 * 107.17080 * 0.24198 * 7 6 5 29 29 N 1.30457 * 108.02289 * 359.59087 * 28 7 6 30 30 H 1.08998 * 109.46513 * 300.00055 * 1 2 3 31 31 H 1.09004 * 109.46949 * 59.99792 * 1 2 3 32 32 H 1.09001 * 109.47102 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47327 * 60.00519 * 3 2 1 34 34 H 1.09002 * 109.47280 * 300.00117 * 3 2 1 35 35 H 1.09009 * 109.46987 * 60.00105 * 4 3 2 36 36 H 1.08991 * 109.47492 * 300.00511 * 4 3 2 37 37 H 1.08002 * 126.29174 * 359.97438 * 6 5 4 38 38 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 39 39 H 1.09001 * 110.03148 * 0.02562 * 13 11 10 40 40 H 1.09001 * 110.03463 * 121.37972 * 13 11 10 41 41 H 1.09010 * 110.48583 * 142.28477 * 14 13 11 42 42 H 1.08992 * 110.48973 * 264.79449 * 14 13 11 43 43 H 1.09000 * 109.47080 * 53.54676 * 17 15 14 44 44 H 1.08999 * 109.46873 * 173.54682 * 17 15 14 45 45 H 0.96997 * 119.99625 * 0.02562 * 18 17 15 46 46 H 0.97001 * 119.99610 * 179.97438 * 22 21 19 47 47 H 1.09005 * 110.48949 * 214.35025 * 27 11 10 48 48 H 1.09002 * 110.48716 * 336.98837 * 27 11 10 49 49 H 1.07998 * 125.99190 * 179.73259 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 4.1314 2.5228 -0.0013 6 6 5.0218 2.9855 0.8907 7 6 5.3276 4.2836 0.5342 8 6 6.2632 5.1852 1.2307 9 8 6.8527 4.8014 2.2227 10 7 6.4653 6.4349 0.7680 11 6 7.3997 7.3287 1.4566 12 1 8.2302 6.7551 1.8681 13 6 6.6729 8.0853 2.5822 14 6 6.7848 9.5870 2.2475 15 6 7.0065 9.6191 0.7149 16 1 6.0613 9.4990 0.1853 17 6 7.7002 10.9163 0.2944 18 7 6.8037 12.0498 0.5350 19 6 7.2118 13.3216 0.2334 20 1 8.1945 13.4891 -0.1823 21 6 6.3625 14.3956 0.4618 22 7 6.7546 15.6180 0.1714 23 14 4.6631 14.1060 1.1813 24 1 4.7359 14.1681 2.6633 25 1 3.7316 15.1514 0.6872 26 1 4.1711 12.7679 0.7656 27 6 7.9289 8.3963 0.4769 28 6 4.5712 4.5885 -0.6195 29 7 3.8689 3.5344 -0.9319 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6888 1.8463 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.8567 0.6437 -0.8909 36 1 3.8575 0.6434 0.8890 37 1 5.4249 2.4420 1.7325 38 1 5.9954 6.7409 -0.0235 39 1 5.6250 7.7871 2.6164 40 1 7.1506 7.8788 3.5399 41 1 5.8631 10.1062 2.5106 42 1 7.6335 10.0315 2.7671 43 1 8.6130 11.0452 0.8760 44 1 7.9487 10.8683 -0.7658 45 1 5.9213 11.8993 0.9086 46 1 6.1610 16.3685 0.3307 47 1 8.9638 8.6478 0.7091 48 1 7.8421 8.0465 -0.5519 49 1 4.5755 5.5285 -1.1512 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717884898.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:11 Heat of formation + Delta-G solvation = -24.699012 kcal Electronic energy + Delta-G solvation = -27983.732366 eV Core-core repulsion = 23946.614786 eV Total energy + Delta-G solvation = -4037.117580 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.43987 -40.69229 -39.09816 -38.89954 -36.53822 -35.08485 -34.49168 -33.20866 -31.52010 -30.60615 -30.19728 -28.89169 -27.26842 -26.16511 -24.60277 -23.94019 -23.68609 -21.80036 -21.22362 -21.08471 -20.94976 -19.54657 -19.01487 -17.66983 -17.37650 -17.26072 -16.65966 -16.61368 -16.46119 -16.07879 -16.04486 -15.82312 -15.30008 -15.14323 -14.99653 -14.82730 -14.52779 -14.40611 -14.25029 -13.83996 -13.58400 -13.51113 -13.09004 -12.85689 -12.83153 -12.72213 -12.38067 -12.25795 -12.16598 -11.98683 -11.91825 -11.78241 -11.60476 -11.56898 -11.42605 -10.93489 -10.87850 -10.80176 -10.66170 -10.10039 -9.66784 -9.24880 -8.00780 -5.33146 0.49383 1.13129 1.19204 1.38308 1.42132 1.49384 2.35343 2.49054 2.50036 2.70968 3.30929 3.48586 3.51769 3.63272 3.77731 3.83623 3.87143 3.89433 4.02748 4.12089 4.17305 4.28498 4.42918 4.46851 4.49092 4.54283 4.57070 4.60892 4.64192 4.64592 4.73071 4.77161 4.81190 4.81574 4.92992 5.11420 5.14325 5.21032 5.27295 5.37784 5.39312 5.57398 5.70065 5.75002 5.78785 5.99750 6.23796 6.46162 6.69737 7.11266 7.35797 7.88835 8.07759 9.20979 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016021 B = 0.001877 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.330750 B =14914.606648 C =15976.250691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.056 3.944 4 C 0.130 3.870 5 N -0.359 5.359 6 C 0.138 3.862 7 C -0.312 4.312 8 C 0.596 3.404 9 O -0.591 6.591 10 N -0.708 5.708 11 C 0.150 3.850 12 H 0.083 0.917 13 C -0.124 4.124 14 C -0.115 4.115 15 C -0.093 4.093 16 H 0.083 0.917 17 C 0.160 3.840 18 N -0.757 5.757 19 C -0.233 4.233 20 H 0.055 0.945 21 C -0.066 4.066 22 N -0.985 5.985 23 Si 0.955 3.045 24 H -0.279 1.279 25 H -0.297 1.297 26 H -0.249 1.249 27 C -0.111 4.111 28 C 0.090 3.910 29 N -0.321 5.321 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.104 0.896 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.105 0.895 36 H 0.134 0.866 37 H 0.208 0.792 38 H 0.411 0.589 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.023 0.977 44 H 0.026 0.974 45 H 0.366 0.634 46 H 0.257 0.743 47 H 0.087 0.913 48 H 0.092 0.908 49 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.782 -36.237 0.309 37.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.022 4.022 4 C 0.010 3.990 5 N -0.138 5.138 6 C -0.014 4.014 7 C -0.327 4.327 8 C 0.385 3.615 9 O -0.473 6.473 10 N -0.359 5.359 11 C 0.045 3.955 12 H 0.101 0.899 13 C -0.163 4.163 14 C -0.153 4.153 15 C -0.112 4.112 16 H 0.101 0.899 17 C 0.034 3.966 18 N -0.402 5.402 19 C -0.365 4.365 20 H 0.073 0.927 21 C -0.257 4.257 22 N -0.636 5.636 23 Si 0.782 3.218 24 H -0.206 1.206 25 H -0.223 1.223 26 H -0.173 1.173 27 C -0.149 4.149 28 C -0.098 4.098 29 N -0.141 5.141 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.122 0.878 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.123 0.877 36 H 0.152 0.848 37 H 0.225 0.775 38 H 0.248 0.752 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.041 0.959 44 H 0.044 0.956 45 H 0.199 0.801 46 H 0.066 0.934 47 H 0.105 0.895 48 H 0.111 0.889 49 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -10.036 -37.198 0.081 38.528 hybrid contribution -0.692 1.485 0.607 1.747 sum -10.728 -35.713 0.688 37.296 Atomic orbital electron populations 1.22967 0.78738 1.04289 1.00895 1.87750 1.21938 1.26991 1.95672 1.22558 0.92796 0.85275 1.01557 1.21728 0.92357 0.77594 1.07306 1.48504 1.32599 1.12509 1.20185 1.23356 0.89864 0.94094 0.94096 1.20250 1.11181 0.96886 1.04353 1.17440 0.80141 0.81324 0.82600 1.90748 1.51731 1.76725 1.28061 1.45845 1.45552 1.12509 1.31951 1.21468 0.91471 0.90093 0.92437 0.89891 1.22506 1.00835 0.94279 0.98655 1.22344 1.01502 0.95770 0.95711 1.22283 0.99332 0.93501 0.96078 0.89895 1.20813 0.92514 0.85651 0.97594 1.42707 1.16689 1.02770 1.78076 1.19081 0.99680 0.84122 1.33576 0.92662 1.25517 1.02686 0.94753 1.02767 1.69896 1.38382 0.98947 1.56402 0.85410 0.80083 0.77993 0.78337 1.20572 1.22344 1.17348 1.22601 0.99781 0.92597 0.99907 1.24514 0.92420 0.98440 0.94440 1.77169 1.25176 0.97456 1.14290 0.93202 0.93346 0.87752 0.92683 0.92539 0.87698 0.84806 0.77489 0.75203 0.91642 0.91475 0.92677 0.91978 0.95912 0.95646 0.80107 0.93430 0.89483 0.88906 0.76899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.40 -4.69 10.70 -148.98 -1.59 -6.29 16 3 C 0.06 0.58 6.11 71.98 0.44 1.02 16 4 C 0.13 1.10 6.86 86.38 0.59 1.69 16 5 N -0.36 -4.85 3.65 -346.30 -1.26 -6.11 16 6 C 0.14 1.96 11.25 84.28 0.95 2.91 16 7 C -0.31 -5.38 6.13 -20.15 -0.12 -5.51 16 8 C 0.60 12.76 7.81 86.66 0.68 13.44 16 9 O -0.59 -16.92 16.56 -4.04 -0.07 -16.99 16 10 N -0.71 -12.49 4.93 -442.37 -2.18 -14.67 16 11 C 0.15 3.03 3.23 45.71 0.15 3.18 16 12 H 0.08 1.87 7.58 -2.39 -0.02 1.85 16 13 C -0.12 -2.79 6.59 31.32 0.21 -2.58 16 14 C -0.12 -3.03 5.96 31.67 0.19 -2.84 16 15 C -0.09 -2.40 2.96 -9.46 -0.03 -2.43 16 16 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 17 C 0.16 5.75 5.71 86.38 0.49 6.25 16 18 N -0.76 -34.76 5.25 -343.44 -1.80 -36.57 16 19 C -0.23 -13.38 10.47 84.03 0.88 -12.50 16 20 H 0.06 3.48 8.06 -2.91 -0.02 3.45 16 21 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 22 N -0.99 -63.62 13.97 21.65 0.30 -63.32 16 23 Si 0.95 45.47 27.74 68.60 1.90 47.37 16 24 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 25 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 26 H -0.25 -10.56 6.52 99.48 0.65 -9.91 16 27 C -0.11 -2.15 5.89 31.71 0.19 -1.97 16 28 C 0.09 1.33 11.50 85.65 0.99 2.32 16 29 N -0.32 -5.48 12.33 -56.28 -0.69 -6.17 16 30 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.05 0.31 8.14 -2.38 -0.02 0.29 16 32 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.13 0.47 8.06 -2.39 -0.02 0.45 16 37 H 0.21 2.00 8.06 -2.91 -0.02 1.98 16 38 H 0.41 5.20 7.52 -92.71 -0.70 4.50 16 39 H 0.06 1.49 7.92 -2.39 -0.02 1.47 16 40 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 42 H 0.06 1.75 8.02 -2.39 -0.02 1.73 16 43 H 0.02 0.85 8.10 -2.39 -0.02 0.83 16 44 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.37 15.98 5.39 -92.71 -0.50 15.48 16 46 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 47 H 0.09 1.70 8.06 -2.38 -0.02 1.68 16 48 H 0.09 1.48 7.98 -2.39 -0.02 1.46 16 49 H 0.21 1.83 7.50 -2.91 -0.02 1.81 16 Total: -1.00 -78.53 404.83 1.61 -76.92 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: -0.30 Total: 24.86 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: 7.31 Total: 0.97 kcal Atomic # 7 Polarization: -121.20 SS G_CDS: -5.64 Total: -126.84 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -1.66 Total: -23.28 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.90 Total: 47.37 kcal Total: -78.53 1.61 -76.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717884898.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.223 kcal (2) G-P(sol) polarization free energy of solvation -78.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds