Wall clock time and date at job start Tue Mar 31 2020 19:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00064 * 2 1 4 4 C 1.53000 * 109.47258 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46983 * 65.00293 * 4 3 2 6 6 C 1.36933 * 120.00194 * 270.00064 * 5 4 3 7 7 H 1.07999 * 120.00442 * 141.76162 * 6 5 4 8 8 C 1.38811 * 119.99798 * 321.75735 * 6 5 4 9 9 N 1.31622 * 119.99692 * 156.55987 * 8 6 5 10 10 Si 1.86794 * 120.00243 * 336.55843 * 8 6 5 11 11 H 1.48501 * 109.46905 * 95.53673 * 10 8 6 12 12 H 1.48503 * 109.47422 * 215.53581 * 10 8 6 13 13 H 1.48497 * 109.47154 * 335.53763 * 10 8 6 14 14 C 1.46504 * 119.99838 * 90.00007 * 5 4 3 15 15 C 1.53008 * 109.47191 * 87.29860 * 14 5 4 16 16 N 1.46491 * 109.46996 * 179.97438 * 15 14 5 17 17 C 1.34779 * 120.00132 * 180.02562 * 16 15 14 18 18 O 1.21293 * 119.99616 * 359.97438 * 17 16 15 19 19 C 1.50695 * 120.00556 * 180.02562 * 17 16 15 20 20 H 1.09003 * 109.49496 * 300.06516 * 19 17 16 21 21 C 1.53111 * 109.50038 * 179.97438 * 19 17 16 22 22 C 1.53285 * 109.70551 * 170.13299 * 21 19 17 23 23 N 1.46477 * 108.69009 * 50.77390 * 22 21 19 24 24 C 1.34405 * 128.44569 * 162.68416 * 23 22 21 25 25 N 1.30781 * 108.55415 * 180.14637 * 24 23 22 26 26 C 1.34423 * 109.32252 * 359.94623 * 25 24 23 27 27 C 1.33863 * 107.79627 * 0.02562 * 26 25 24 28 28 C 1.50710 * 128.68170 * 180.13630 * 27 26 25 29 29 H 1.09005 * 109.46949 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46539 * 299.99652 * 1 2 3 31 31 H 1.09001 * 109.47006 * 59.99326 * 1 2 3 32 32 H 1.09001 * 109.46969 * 60.00276 * 3 2 1 33 33 H 1.08995 * 109.47690 * 300.00119 * 3 2 1 34 34 H 1.09003 * 109.47587 * 185.00083 * 4 3 2 35 35 H 1.08997 * 109.47603 * 305.00276 * 4 3 2 36 36 H 0.97004 * 119.99840 * 179.97438 * 9 8 6 37 37 H 1.08999 * 109.47361 * 207.29478 * 14 5 4 38 38 H 1.08995 * 109.47067 * 327.29742 * 14 5 4 39 39 H 1.08999 * 109.46656 * 300.00049 * 15 14 5 40 40 H 1.09003 * 109.47118 * 59.99619 * 15 14 5 41 41 H 0.96999 * 120.00697 * 359.97438 * 16 15 14 42 42 H 1.08999 * 109.43759 * 290.21189 * 21 19 17 43 43 H 1.09005 * 109.43227 * 50.06638 * 21 19 17 44 44 H 1.09000 * 109.59873 * 170.53215 * 22 21 19 45 45 H 1.08998 * 109.60444 * 291.01072 * 22 21 19 46 46 H 1.08007 * 125.71928 * 0.11196 * 24 23 22 47 47 H 1.08001 * 126.10412 * 180.02562 * 26 25 24 48 48 H 1.09003 * 109.74150 * 44.55163 * 28 27 26 49 49 H 1.08997 * 109.74340 * 283.83941 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.0967 -0.7969 -1.3370 7 1 3.8113 -1.3094 -2.2438 8 6 4.5864 -1.5183 -0.2569 9 7 4.2906 -2.7945 -0.1294 10 14 5.6653 -0.6780 1.0155 11 1 4.8282 -0.2350 2.1593 12 1 6.6970 -1.6314 1.4971 13 1 6.3284 0.5005 0.4017 14 6 4.2863 1.4008 -2.4148 15 6 5.7497 1.8426 -2.3486 16 7 6.0604 2.6784 -3.5109 17 6 7.3001 3.1845 -3.6649 18 8 8.1582 2.9483 -2.8409 19 6 7.6197 4.0448 -4.8602 20 1 7.4520 3.4747 -5.7740 21 6 9.0840 4.4871 -4.7947 22 6 9.4833 5.1506 -6.1176 23 7 8.4901 6.1757 -6.4471 24 6 8.5979 7.1947 -7.3168 25 7 7.4801 7.8736 -7.3030 26 6 6.6284 7.3103 -6.4287 27 6 7.2406 6.2508 -5.8859 28 6 6.7147 5.2848 -4.8555 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6886 1.8463 0.8900 33 1 1.6887 1.8464 -0.8899 34 1 3.9786 2.1765 0.0889 35 1 3.8515 0.5682 0.8408 36 1 4.6331 -3.2987 0.6251 37 1 4.1202 0.8299 -3.3283 38 1 3.6411 2.2793 -2.4130 39 1 5.9158 2.4136 -1.4351 40 1 6.3949 0.9641 -2.3503 41 1 5.3743 2.8671 -4.1701 42 1 9.2118 5.1988 -3.9790 43 1 9.7179 3.6179 -4.6192 44 1 10.4649 5.6128 -6.0132 45 1 9.5116 4.4013 -6.9086 46 1 9.4627 7.4160 -7.9247 47 1 5.6287 7.6516 -6.2043 48 1 5.6944 4.9962 -5.1083 49 1 6.7328 5.7512 -3.8705 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717975235.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:58 Heat of formation + Delta-G solvation = 6.730133 kcal Electronic energy + Delta-G solvation = -29237.285352 eV Core-core repulsion = 25201.530642 eV Total energy + Delta-G solvation = -4035.754710 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.61214 -39.87214 -37.50853 -36.60946 -35.91222 -34.35802 -33.38784 -31.62970 -30.78576 -29.92238 -28.50232 -27.39179 -25.71246 -25.06483 -23.98187 -22.88426 -22.34768 -21.73070 -20.53889 -20.02159 -19.35058 -17.52635 -17.14157 -16.83614 -16.16440 -15.93199 -15.80987 -15.45854 -15.28975 -14.73056 -14.44807 -14.35678 -14.31833 -14.11281 -13.96687 -13.92546 -13.51503 -13.40543 -13.17246 -12.66915 -12.43422 -12.30426 -12.12193 -11.88504 -11.58908 -11.51715 -11.39847 -11.32751 -11.05288 -10.76729 -10.59893 -10.31490 -10.26550 -9.81239 -9.80025 -9.75682 -9.53816 -8.91811 -8.82918 -8.60847 -8.44240 -6.90443 -5.93287 -3.35608 1.77913 2.47537 2.64035 2.91621 3.18803 3.35325 3.51431 3.55302 4.03741 4.20494 4.25789 4.38723 4.49828 4.54046 4.58376 4.72514 4.77093 4.85464 4.96423 5.08687 5.09900 5.31195 5.35728 5.39394 5.47442 5.59201 5.62389 5.68129 5.73772 5.75161 5.78548 5.91772 5.97127 6.05694 6.08282 6.11499 6.15012 6.25465 6.47356 6.49162 6.55652 6.68737 6.79205 6.92832 7.60226 7.80885 7.92971 8.09998 8.28895 8.42351 8.96547 9.75102 10.09350 11.22283 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017277 B = 0.002455 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.262655 B =11404.369014 C =12510.827042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.347 6.347 3 C 0.048 3.952 4 C 0.133 3.867 5 N -0.590 5.590 6 C -0.259 4.259 7 H 0.077 0.923 8 C 0.048 3.952 9 N -0.892 5.892 10 Si 0.867 3.133 11 H -0.286 1.286 12 H -0.301 1.301 13 H -0.267 1.267 14 C 0.141 3.859 15 C 0.091 3.909 16 N -0.721 5.721 17 C 0.513 3.487 18 O -0.540 6.540 19 C -0.112 4.112 20 H 0.101 0.899 21 C -0.115 4.115 22 C 0.103 3.897 23 N -0.456 5.456 24 C 0.182 3.818 25 N -0.498 5.498 26 C -0.023 4.023 27 C -0.021 4.021 28 C -0.036 4.036 29 H 0.078 0.922 30 H 0.026 0.974 31 H 0.029 0.971 32 H 0.029 0.971 33 H 0.036 0.964 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.261 0.739 37 H 0.060 0.940 38 H 0.042 0.958 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.397 0.603 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.096 0.904 45 H 0.088 0.912 46 H 0.204 0.796 47 H 0.170 0.830 48 H 0.094 0.906 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.192 17.234 -11.250 21.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.264 6.264 3 C -0.031 4.031 4 C 0.007 3.993 5 N -0.311 5.311 6 C -0.388 4.388 7 H 0.094 0.906 8 C -0.153 4.153 9 N -0.532 5.532 10 Si 0.697 3.303 11 H -0.214 1.214 12 H -0.229 1.229 13 H -0.192 1.192 14 C 0.014 3.986 15 C -0.034 4.034 16 N -0.372 5.372 17 C 0.298 3.702 18 O -0.417 6.417 19 C -0.134 4.134 20 H 0.120 0.880 21 C -0.153 4.153 22 C -0.019 4.019 23 N -0.140 5.140 24 C -0.100 4.100 25 N -0.216 5.216 26 C -0.170 4.170 27 C -0.135 4.135 28 C -0.074 4.074 29 H 0.097 0.903 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.230 0.770 42 H 0.099 0.901 43 H 0.118 0.882 44 H 0.114 0.886 45 H 0.106 0.894 46 H 0.220 0.780 47 H 0.187 0.813 48 H 0.113 0.887 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.892 17.277 -11.001 21.058 hybrid contribution 0.316 -0.021 0.992 1.041 sum 5.207 17.256 -10.009 20.617 Atomic orbital electron populations 1.22647 0.83778 1.01905 0.98260 1.88311 1.16922 1.26415 1.94787 1.23202 0.97161 0.85139 0.97605 1.21333 0.90497 0.96598 0.90859 1.43945 1.75267 1.03592 1.08334 1.18569 1.38119 0.79398 1.02686 0.90576 1.25361 0.97500 0.94804 0.97660 1.69886 1.44123 1.08588 1.30601 0.87101 0.81523 0.79684 0.82022 1.21426 1.22930 1.19162 1.21101 0.90621 0.94183 0.92675 1.22500 1.00671 0.93838 0.86423 1.46147 1.11787 1.51938 1.27305 1.20314 0.82708 0.80313 0.86857 1.90731 1.46821 1.59881 1.44238 1.21445 0.96692 0.96508 0.98716 0.88043 1.21694 0.95471 1.02269 0.95876 1.22083 0.91349 0.89831 0.98617 1.45496 1.12876 1.23578 1.32037 1.24793 0.99908 0.88041 0.97290 1.70501 1.01447 1.28556 1.21096 1.21847 1.00614 0.95644 0.98911 1.21039 0.87127 1.02187 1.03167 1.20189 0.98784 0.91483 0.96956 0.90300 0.95583 0.95241 0.95307 0.94533 0.92753 0.91809 0.92879 0.92120 0.93985 0.92462 0.90899 0.76958 0.90094 0.88192 0.88602 0.89391 0.77961 0.81320 0.88748 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.63 16 2 O -0.35 -7.53 10.18 -35.23 -0.36 -7.88 16 3 C 0.05 0.90 6.28 37.16 0.23 1.13 16 4 C 0.13 2.75 4.96 -4.04 -0.02 2.73 16 5 N -0.59 -13.08 2.04 -173.24 -0.35 -13.43 16 6 C -0.26 -6.98 9.39 -15.06 -0.14 -7.13 16 7 H 0.08 2.24 8.06 -52.49 -0.42 1.81 16 8 C 0.05 1.37 5.28 -17.43 -0.09 1.28 16 9 N -0.89 -27.15 13.97 55.49 0.78 -26.37 16 10 Si 0.87 22.15 25.16 -169.99 -4.28 17.87 16 11 H -0.29 -7.17 6.67 56.52 0.38 -6.79 16 12 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 13 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.14 2.45 5.78 -4.04 -0.02 2.42 16 15 C 0.09 1.55 6.00 -4.04 -0.02 1.53 16 16 N -0.72 -9.09 5.46 -60.29 -0.33 -9.42 16 17 C 0.51 6.72 7.13 -10.99 -0.08 6.64 16 18 O -0.54 -9.56 15.82 5.55 0.09 -9.47 16 19 C -0.11 -0.99 2.55 -91.45 -0.23 -1.22 16 20 H 0.10 0.78 8.12 -51.93 -0.42 0.35 16 21 C -0.12 -0.94 4.65 -26.53 -0.12 -1.07 16 22 C 0.10 0.62 7.00 -3.91 -0.03 0.59 16 23 N -0.46 -3.82 3.13 -114.08 -0.36 -4.18 16 24 C 0.18 1.61 12.66 -90.72 -1.15 0.46 16 25 N -0.50 -5.79 11.27 -14.87 -0.17 -5.95 16 26 C -0.02 -0.24 11.84 -17.95 -0.21 -0.45 16 27 C -0.02 -0.19 6.57 -81.73 -0.54 -0.73 16 28 C -0.04 -0.28 5.45 -27.61 -0.15 -0.43 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.97 8.07 -51.93 -0.42 0.55 16 35 H 0.06 1.51 3.45 -51.93 -0.18 1.33 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.06 1.04 8.02 -51.93 -0.42 0.63 16 38 H 0.04 0.61 8.09 -51.93 -0.42 0.19 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.40 3.66 8.20 -40.82 -0.33 3.32 16 42 H 0.08 0.76 8.11 -51.93 -0.42 0.34 16 43 H 0.10 0.88 7.77 -51.93 -0.40 0.47 16 44 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.20 1.04 8.06 -52.48 -0.42 0.62 16 47 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 48 H 0.09 0.58 7.95 -51.93 -0.41 0.17 16 49 H 0.09 0.75 8.11 -51.93 -0.42 0.33 16 LS Contribution 396.11 15.07 5.97 5.97 Total: -1.00 -36.42 396.11 -8.56 -44.98 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -8.08 Total: 0.50 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: -1.47 Total: 7.39 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: -0.43 Total: -59.36 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.27 Total: -17.36 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.28 Total: 17.87 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.42 -8.56 -44.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717975235.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.713 kcal (2) G-P(sol) polarization free energy of solvation -36.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds